RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PRR15LQ9BU68 103 aa7.07□□□□□ -1.28
SHMT2-212ENST00000554467 LINC00208Q96KT6 92 aa7.05□□□□□ -1.28
SHMT2-212ENST00000554467 SPRR1BP22528 89 aa7.05□□□□□ -1.28
SHMT2-212ENST00000554467 KMT2CQ8NEZ4 4911 aaKnown RBP7.04□□□□□ -1.28
SHMT2-212ENST00000554467 NDUFB1O75438 58 aa7.04□□□□□ -1.28
SHMT2-212ENST00000554467 VPS13BQ7Z7G8 4022 aa7.04□□□□□ -1.28
SHMT2-212ENST00000554467 IGLV8-61A0A075B6I0 122 aa7.04□□□□□ -1.28
SHMT2-212ENST00000554467 LIMD2Q9BT23 127 aa7.04□□□□□ -1.28
SHMT2-212ENST00000554467 ZNF861PO60384 105 aa7.03□□□□□ -1.28
SHMT2-212ENST00000554467 ATP11AUNQ6ZP68 121 aa7.03□□□□□ -1.28
SHMT2-212ENST00000554467 Q75L30 129 aa7.02□□□□□ -1.29
SHMT2-212ENST00000554467 MOBPQ13875 183 aa7.01□□□□□ -1.29
SHMT2-212ENST00000554467 IGLV7-43P04211 117 aa7.01□□□□□ -1.29
SHMT2-212ENST00000554467 KRTAP29-1A8MX34 341 aaPredicted RBP7□□□□□ -1.29
SHMT2-212ENST00000554467 MP68P56378 58 aa7□□□□□ -1.29
SHMT2-212ENST00000554467 CASC2Q6XLA1 102 aa7□□□□□ -1.29
SHMT2-212ENST00000554467 SPANXA2-OT1Q8N9U9 137 aa7□□□□□ -1.29
SHMT2-212ENST00000554467 LOC101927531A0A1B0GV80 90 aa6.99□□□□□ -1.29
SHMT2-212ENST00000554467 A6NED7 52 aa6.99□□□□□ -1.29
SHMT2-212ENST00000554467 H0Y9P7 68 aa6.97□□□□□ -1.29
SHMT2-212ENST00000554467 DYNC1H1Q14204 4646 aaKnown RBP6.97□□□□□ -1.29
SHMT2-212ENST00000554467 LINC00483Q53H64 154 aa6.97□□□□□ -1.29
SHMT2-212ENST00000554467 NDUFS5O43920 106 aa6.97□□□□□ -1.29
SHMT2-212ENST00000554467 Q6ZSA8 131 aa6.96□□□□□ -1.3
SHMT2-212ENST00000554467 COA5Q86WW8 74 aa6.96□□□□□ -1.3
SHMT2-212ENST00000554467 ZNF706Q9Y5V0 76 aaPredicted RBP6.96□□□□□ -1.3
SHMT2-212ENST00000554467 CDC42SE1Q9NRR8 79 aa6.95□□□□□ -1.3
SHMT2-212ENST00000554467 RYR2Q92736 4967 aa6.94□□□□□ -1.3
SHMT2-212ENST00000554467 FAT1Q14517 4588 aa6.94□□□□□ -1.3
SHMT2-212ENST00000554467 C7orf65Q6ZTY9 151 aa6.93□□□□□ -1.3
SHMT2-212ENST00000554467 PCOTHQ58A44 107 aa6.92□□□□□ -1.3
SHMT2-212ENST00000554467 LINC00472Q9H8W2 130 aa6.92□□□□□ -1.3
SHMT2-212ENST00000554467 A8MWP4 228 aa6.91□□□□□ -1.3
SHMT2-212ENST00000554467 SPINK7P58062 85 aa6.91□□□□□ -1.3
SHMT2-212ENST00000554467 SPINK6Q6UWN8 80 aa6.91□□□□□ -1.3
SHMT2-212ENST00000554467 IGHV6-1A0A0B4J1U7 121 aa6.91□□□□□ -1.3
SHMT2-212ENST00000554467 SPAG11AQ6PDA7 123 aa6.91□□□□□ -1.3
SHMT2-212ENST00000554467 SMR3BP02814 79 aaPredicted RBP6.9□□□□□ -1.3
SHMT2-212ENST00000554467 A0A087X002 238 aa6.9□□□□□ -1.31
SHMT2-212ENST00000554467 IGLV7-46A0A075B6I9 117 aa6.89□□□□□ -1.31
SHMT2-212ENST00000554467 C8orf87E5RJ46 101 aa6.89□□□□□ -1.31
SHMT2-212ENST00000554467 C4orf48Q5BLP8 95 aa6.89□□□□□ -1.31
SHMT2-212ENST00000554467 H3BPC8 53 aa6.88□□□□□ -1.31
SHMT2-212ENST00000554467 LINC01558Q9Y6Z2 57 aa6.88□□□□□ -1.31
SHMT2-212ENST00000554467 Q96NJ1 140 aa6.87□□□□□ -1.31
SHMT2-212ENST00000554467 CDK2AP2O75956 126 aa6.87□□□□□ -1.31
SHMT2-212ENST00000554467 APOBP04114 4563 aaKnown RBP6.86□□□□□ -1.31
SHMT2-212ENST00000554467 KRTAP13-2Q52LG2 175 aa6.84□□□□□ -1.31
SHMT2-212ENST00000554467 PRAC1Q96KF2 57 aa6.84□□□□□ -1.31
SHMT2-212ENST00000554467 MMP24-AS1A0A0U1RRL7 71 aa6.83□□□□□ -1.32
SHMT2-212ENST00000554467 ADM2Q7Z4H4 148 aa6.83□□□□□ -1.32
SHMT2-212ENST00000554467 RYR3Q15413 4870 aa6.83□□□□□ -1.32
SHMT2-212ENST00000554467 LINC00313P59037 77 aa6.83□□□□□ -1.32
SHMT2-212ENST00000554467 A0A1B0GVY2 172 aa6.81□□□□□ -1.32
SHMT2-212ENST00000554467 KRTAP1-4P0C5Y4 121 aa6.8□□□□□ -1.32
SHMT2-212ENST00000554467 HRES1P13985 223 aa6.8□□□□□ -1.32
SHMT2-212ENST00000554467 NOTCH2NLQ7Z3S9 236 aa6.8□□□□□ -1.32
SHMT2-212ENST00000554467 PLA2G1BP04054 148 aaKnown RBP6.79□□□□□ -1.32
SHMT2-212ENST00000554467 C8orf17Q9NRJ1 99 aa6.78□□□□□ -1.32
SHMT2-212ENST00000554467 RETNLBQ9BQ08 111 aa6.77□□□□□ -1.33
SHMT2-212ENST00000554467 SSBP3-AS1Q7Z2R9 100 aa6.76□□□□□ -1.33
SHMT2-212ENST00000554467 A0A1B0GVX0 72 aa6.75□□□□□ -1.33
SHMT2-212ENST00000554467 PRR26Q8N8Z3 221 aa6.74□□□□□ -1.33
SHMT2-212ENST00000554467 ASB16-AS1Q495Z4 193 aa6.73□□□□□ -1.33
SHMT2-212ENST00000554467 TYMSOSQ8TAI1 123 aa6.72□□□□□ -1.33
SHMT2-212ENST00000554467 H3BS24 57 aa6.71□□□□□ -1.33
SHMT2-212ENST00000554467 MRPL34Q9BQ48 92 aaKnown RBP6.71□□□□□ -1.33
SHMT2-212ENST00000554467 TP53AIP1Q9HCN2 124 aa6.69□□□□□ -1.34
SHMT2-212ENST00000554467 LINC01554Q52M75 96 aa6.68□□□□□ -1.34
SHMT2-212ENST00000554467 LRP1Q07954 4544 aaKnown RBP6.68□□□□□ -1.34
SHMT2-212ENST00000554467 HSPG2P98160 4391 aa6.67□□□□□ -1.34
SHMT2-212ENST00000554467 FLG2Q5D862 2391 aaPredicted RBP6.66□□□□□ -1.34
SHMT2-212ENST00000554467 KRTAP10-4P60372 401 aaPredicted RBP6.66□□□□□ -1.34
SHMT2-212ENST00000554467 Q5W150 140 aa6.65□□□□□ -1.35
SHMT2-212ENST00000554467 PKHD1L1Q86WI1 4243 aa6.64□□□□□ -1.35
SHMT2-212ENST00000554467 LINC00304Q8N9R0 145 aa6.62□□□□□ -1.35
SHMT2-212ENST00000554467 KIAA1109Q2LD37 5005 aa6.61□□□□□ -1.35
SHMT2-212ENST00000554467 EPPK1P58107 5090 aaKnown RBP6.59□□□□□ -1.35
SHMT2-212ENST00000554467 SPINK1P00995 79 aa6.58□□□□□ -1.36
SHMT2-212ENST00000554467 MYCBP2O75592 4640 aa6.58□□□□□ -1.36
SHMT2-212ENST00000554467 KRTAP17-1Q9BYP8 105 aa6.57□□□□□ -1.36
SHMT2-212ENST00000554467 DMBT1Q9UGM3 2413 aaPredicted RBP6.56□□□□□ -1.36
SHMT2-212ENST00000554467 RYR1P21817 5038 aa6.56□□□□□ -1.36
SHMT2-212ENST00000554467 KRTAP13-3Q3SY46 172 aa6.56□□□□□ -1.36
SHMT2-212ENST00000554467 SPATA8Q6RVD6 105 aa6.56□□□□□ -1.36
SHMT2-212ENST00000554467 CSAG1Q6PB30 78 aa6.54□□□□□ -1.36
SHMT2-212ENST00000554467 IGKV2D-30A0A075B6S6 120 aa6.54□□□□□ -1.36
SHMT2-212ENST00000554467 IGKV2-30P06310 120 aa6.54□□□□□ -1.36
SHMT2-212ENST00000554467 Q5VSD8 79 aa6.54□□□□□ -1.36
SHMT2-212ENST00000554467 FAM229AH3BQW9 127 aa6.54□□□□□ -1.36
SHMT2-212ENST00000554467 TNXBP22105 4242 aa6.52□□□□□ -1.37
SHMT2-212ENST00000554467 C9orf92A6NGG3 77 aa6.51□□□□□ -1.37
SHMT2-212ENST00000554467 KRTAP16-1A8MUX0 517 aa6.51□□□□□ -1.37
SHMT2-212ENST00000554467 ACYP2P14621 99 aa6.51□□□□□ -1.37
SHMT2-212ENST00000554467 A0A1B0GU69 56 aa6.5□□□□□ -1.37
SHMT2-212ENST00000554467 MIR22HGQ0VDD5 57 aa6.48□□□□□ -1.37
SHMT2-212ENST00000554467 DMAC1Q96GE9 116 aa6.47□□□□□ -1.37
SHMT2-212ENST00000554467 Q8N1X5 172 aa6.47□□□□□ -1.37
SHMT2-212ENST00000554467 FAT3Q8TDW7 4589 aa6.46□□□□□ -1.38
SHMT2-212ENST00000554467 UQCR11O14957 56 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms