RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 DMAC1Q96GE9 116 aa9.1□□□□□ -0.95
ARHGEF40-202ENST00000553709 KRTAP10-1P60331 282 aa9.09□□□□□ -0.95
ARHGEF40-202ENST00000553709 KRTAP10-2P60368 255 aa9.09□□□□□ -0.95
ARHGEF40-202ENST00000553709 Q6ZR54 194 aa9.08□□□□□ -0.96
ARHGEF40-202ENST00000553709 NF1P21359 2839 aa9.08□□□□□ -0.96
ARHGEF40-202ENST00000553709 MXRA5Q9NR99 2828 aa9.07□□□□□ -0.96
ARHGEF40-202ENST00000553709 S4R3F8 94 aa9.07□□□□□ -0.96
ARHGEF40-202ENST00000553709 M0R2T5 61 aa9.06□□□□□ -0.96
ARHGEF40-202ENST00000553709 NIPBLQ6KC79 2804 aaeCLIP9.05□□□□□ -0.96
ARHGEF40-202ENST00000553709 Q5VSD8 79 aa9.04□□□□□ -0.96
ARHGEF40-202ENST00000553709 TENM4Q6N022 2769 aa9.04□□□□□ -0.96
ARHGEF40-202ENST00000553709 CAMK2N1Q7Z7J9 78 aa9.03□□□□□ -0.96
ARHGEF40-202ENST00000553709 ASH1LQ9NR48 2969 aaKnown RBP9□□□□□ -0.97
ARHGEF40-202ENST00000553709 PDZD2O15018 2839 aa9□□□□□ -0.97
ARHGEF40-202ENST00000553709 KRTAP11-1Q8IUC1 163 aa8.95□□□□□ -0.98
ARHGEF40-202ENST00000553709 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
ARHGEF40-202ENST00000553709 A0A087X002 238 aa8.94□□□□□ -0.98
ARHGEF40-202ENST00000553709 KRTAP7-1Q8IUC3 87 aa8.93□□□□□ -0.98
ARHGEF40-202ENST00000553709 SMG1Q96Q15 3661 aaKnown RBP8.93□□□□□ -0.98
ARHGEF40-202ENST00000553709 STAB2Q8WWQ8 2551 aa8.93□□□□□ -0.98
ARHGEF40-202ENST00000553709 BSNQ9UPA5 3926 aa8.93□□□□□ -0.98
ARHGEF40-202ENST00000553709 NOTCH2NLQ7Z3S9 236 aa8.92□□□□□ -0.98
ARHGEF40-202ENST00000553709 KRTAP21-3Q3LHN1 58 aa8.9□□□□□ -0.99
ARHGEF40-202ENST00000553709 FLG2Q5D862 2391 aaPredicted RBP8.88□□□□□ -0.99
ARHGEF40-202ENST00000553709 Q6ZRN7 208 aaPredicted RBP8.88□□□□□ -0.99
ARHGEF40-202ENST00000553709 DMBT1Q9UGM3 2413 aaPredicted RBP8.88□□□□□ -0.99
ARHGEF40-202ENST00000553709 RPL37P61927 97 aaKnown RBP8.88□□□□□ -0.99
ARHGEF40-202ENST00000553709 R4GN34 69 aa8.88□□□□□ -0.99
ARHGEF40-202ENST00000553709 H1FX-AS1Q4G0G2 97 aa8.87□□□□□ -0.99
ARHGEF40-202ENST00000553709 A0A0A0MQY5 61 aa8.86□□□□□ -0.99
ARHGEF40-202ENST00000553709 ASB16-AS1Q495Z4 193 aa8.85□□□□□ -0.99
ARHGEF40-202ENST00000553709 SPENQ96T58 3664 aaKnown RBP8.81□□□□□ -1
ARHGEF40-202ENST00000553709 ROMO1P60602 79 aa8.81□□□□□ -1
ARHGEF40-202ENST00000553709 KRTAP13-1Q8IUC0 172 aa8.79□□□□□ -1
ARHGEF40-202ENST00000553709 A6NN06 94 aa8.77□□□□□ -1.01
ARHGEF40-202ENST00000553709 OTOGQ6ZRI0 2925 aa8.77□□□□□ -1.01
ARHGEF40-202ENST00000553709 SPATA8Q6RVD6 105 aa8.75□□□□□ -1.01
ARHGEF40-202ENST00000553709 RPS29P62273 56 aaKnown RBP8.74□□□□□ -1.01
ARHGEF40-202ENST00000553709 CELSR1Q9NYQ6 3014 aa8.73□□□□□ -1.01
ARHGEF40-202ENST00000553709 M0QZ58 72 aa8.73□□□□□ -1.01
ARHGEF40-202ENST00000553709 A8MU10 97 aa8.73□□□□□ -1.01
ARHGEF40-202ENST00000553709 NBPF19A0A087WUL8 3843 aa8.72□□□□□ -1.01
ARHGEF40-202ENST00000553709 KRTAP13-2Q52LG2 175 aa8.7□□□□□ -1.02
ARHGEF40-202ENST00000553709 CSMD1Q96PZ7 3565 aa8.7□□□□□ -1.02
ARHGEF40-202ENST00000553709 ADM2Q7Z4H4 148 aa8.69□□□□□ -1.02
ARHGEF40-202ENST00000553709 KRTAP16-1A8MUX0 517 aa8.68□□□□□ -1.02
ARHGEF40-202ENST00000553709 TENM1Q9UKZ4 2725 aa8.67□□□□□ -1.02
ARHGEF40-202ENST00000553709 ANK3Q12955 4377 aaKnown RBP8.64□□□□□ -1.03
ARHGEF40-202ENST00000553709 SVEP1Q4LDE5 3571 aa8.61□□□□□ -1.03
ARHGEF40-202ENST00000553709 KRTAP25-1Q3LHN0 102 aa8.56□□□□□ -1.04
ARHGEF40-202ENST00000553709 TENM3Q9P273 2699 aa8.55□□□□□ -1.04
ARHGEF40-202ENST00000553709 CSMD2Q7Z408 3487 aa8.53□□□□□ -1.04
ARHGEF40-202ENST00000553709 VWFP04275 2813 aa8.51□□□□□ -1.05
ARHGEF40-202ENST00000553709 NDUFAF8A1L188 74 aa8.5□□□□□ -1.05
ARHGEF40-202ENST00000553709 PLAC4Q8WY50 150 aa8.44□□□□□ -1.06
ARHGEF40-202ENST00000553709 A8MUU9 505 aa8.43□□□□□ -1.06
ARHGEF40-202ENST00000553709 FBN1P35555 2871 aaKnown RBP8.41□□□□□ -1.06
ARHGEF40-202ENST00000553709 ZFHX3Q15911 3703 aa8.38□□□□□ -1.07
ARHGEF40-202ENST00000553709 C20orf166-AS1Q96NR2 134 aa8.38□□□□□ -1.07
ARHGEF40-202ENST00000553709 KRTAP1-4P0C5Y4 121 aa8.31□□□□□ -1.08
ARHGEF40-202ENST00000553709 VPS13CQ709C8 3753 aa8.24□□□□□ -1.09
ARHGEF40-202ENST00000553709 TRRAPQ9Y4A5 3859 aa8.23□□□□□ -1.09
ARHGEF40-202ENST00000553709 TENM2Q9NT68 2774 aa8.18□□□□□ -1.1
ARHGEF40-202ENST00000553709 PKD1L1Q8TDX9 2849 aa8.16□□□□□ -1.1
ARHGEF40-202ENST00000553709 ZNF469Q96JG9 3925 aaPredicted RBP8.16□□□□□ -1.1
ARHGEF40-202ENST00000553709 XP32Q5T750 250 aa8.15□□□□□ -1.11
ARHGEF40-202ENST00000553709 AKAP9Q99996 3911 aa8.13□□□□□ -1.11
ARHGEF40-202ENST00000553709 CUBNO60494 3623 aa8.09□□□□□ -1.11
ARHGEF40-202ENST00000553709 TNP1P09430 55 aa8.08□□□□□ -1.12
ARHGEF40-202ENST00000553709 TGP01266 2768 aa8.08□□□□□ -1.12
ARHGEF40-202ENST00000553709 H0YAA0 97 aa8.08□□□□□ -1.12
ARHGEF40-202ENST00000553709 A0A1B0GVY2 172 aa8.02□□□□□ -1.13
ARHGEF40-202ENST00000553709 C10orf95Q9H7T3 257 aa8.01□□□□□ -1.13
ARHGEF40-202ENST00000553709 TPRXLQ17RH7 258 aa7.96□□□□□ -1.14
ARHGEF40-202ENST00000553709 HUWE1Q7Z6Z7 4374 aaKnown RBP7.94□□□□□ -1.14
ARHGEF40-202ENST00000553709 KRTAP13-3Q3SY46 172 aa7.94□□□□□ -1.14
ARHGEF40-202ENST00000553709 PP632Q6XCG6 107 aa7.93□□□□□ -1.14
ARHGEF40-202ENST00000553709 P0C880 135 aa7.85□□□□□ -1.15
ARHGEF40-202ENST00000553709 FBN3Q75N90 2809 aa7.83□□□□□ -1.16
ARHGEF40-202ENST00000553709 KRTAP10-8P60410 259 aa7.81□□□□□ -1.16
ARHGEF40-202ENST00000553709 DNAH9Q9NYC9 4486 aa7.72□□□□□ -1.17
ARHGEF40-202ENST00000553709 MEGF8Q7Z7M0 2845 aa7.72□□□□□ -1.17
ARHGEF40-202ENST00000553709 KRTAP10-10P60014 251 aa7.68□□□□□ -1.18
ARHGEF40-202ENST00000553709 PRO2289Q9P1D8 64 aa7.57□□□□□ -1.2
ARHGEF40-202ENST00000553709 KRTAP12-2P59991 146 aa7.56□□□□□ -1.2
ARHGEF40-202ENST00000553709 ALMS1Q8TCU4 4167 aa7.55□□□□□ -1.2
ARHGEF40-202ENST00000553709 KRTAP3-1Q9BYR8 98 aa7.53□□□□□ -1.2
ARHGEF40-202ENST00000553709 COL7A1Q02388 2944 aa7.51□□□□□ -1.21
ARHGEF40-202ENST00000553709 SRRM2Q9UQ35 2752 aaKnown RBP7.47□□□□□ -1.21
ARHGEF40-202ENST00000553709 PLECQ15149 4684 aaKnown RBP7.46□□□□□ -1.22
ARHGEF40-202ENST00000553709 ANK2Q01484 3957 aa7.46□□□□□ -1.22
ARHGEF40-202ENST00000553709 KRTAP12-1P59990 96 aa7.45□□□□□ -1.22
ARHGEF40-202ENST00000553709 KRTAP10-4P60372 401 aaPredicted RBP7.42□□□□□ -1.22
ARHGEF40-202ENST00000553709 DNAH1Q9P2D7 4330 aa7.39□□□□□ -1.23
ARHGEF40-202ENST00000553709 KRTAP13-4Q3LI77 160 aa7.39□□□□□ -1.23
ARHGEF40-202ENST00000553709 VPS13DQ5THJ4 4388 aa7.39□□□□□ -1.23
ARHGEF40-202ENST00000553709 DNAH3Q8TD57 4116 aa7.35□□□□□ -1.23
ARHGEF40-202ENST00000553709 MT1HL1P0DM35 61 aa7.31□□□□□ -1.24
ARHGEF40-202ENST00000553709 KRTAP10-6P60371 365 aaPredicted RBP7.31□□□□□ -1.24
ARHGEF40-202ENST00000553709 DNHD1Q96M86 4753 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms