RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 CD164Q04900 197 aa10.58□□□□□ -0.72
VIM-209ENST00000544301 SSBP3-AS1Q7Z2R9 100 aa10.58□□□□□ -0.72
VIM-209ENST00000544301 LRP1BQ9NZR2 4599 aa10.58□□□□□ -0.72
VIM-209ENST00000544301 A0A087X002 238 aa10.57□□□□□ -0.72
VIM-209ENST00000544301 NOTCH2NLQ7Z3S9 236 aa10.57□□□□□ -0.72
VIM-209ENST00000544301 SPANXA2-OT1Q8N9U9 137 aa10.57□□□□□ -0.72
VIM-209ENST00000544301 MPLKIPQ8TAP9 179 aa10.57□□□□□ -0.72
VIM-209ENST00000544301 MRPL34Q9BQ48 92 aaKnown RBP10.55□□□□□ -0.72
VIM-209ENST00000544301 SPINK6Q6UWN8 80 aa10.55□□□□□ -0.72
VIM-209ENST00000544301 NDUFS5O43920 106 aa10.54□□□□□ -0.72
VIM-209ENST00000544301 KRTAP21-3Q3LHN1 58 aa10.51□□□□□ -0.73
VIM-209ENST00000544301 KRTAP13-2Q52LG2 175 aa10.5□□□□□ -0.73
VIM-209ENST00000544301 PRO0628Q9UI54 55 aa10.49□□□□□ -0.73
VIM-209ENST00000544301 LINC00336Q6ZUF6 198 aa10.48□□□□□ -0.73
VIM-209ENST00000544301 VPS13BQ7Z7G8 4022 aa10.45□□□□□ -0.74
VIM-209ENST00000544301 IGLV7-46A0A075B6I9 117 aa10.45□□□□□ -0.74
VIM-209ENST00000544301 Q1T7F1 81 aa10.45□□□□□ -0.74
VIM-209ENST00000544301 PCOTHQ58A44 107 aa10.45□□□□□ -0.74
VIM-209ENST00000544301 KRTAP1-4P0C5Y4 121 aa10.42□□□□□ -0.74
VIM-209ENST00000544301 C8orf87E5RJ46 101 aa10.41□□□□□ -0.74
VIM-209ENST00000544301 C1orf195Q5TG92 126 aa10.39□□□□□ -0.75
VIM-209ENST00000544301 Q5W150 140 aa10.37□□□□□ -0.75
VIM-209ENST00000544301 KRTAP13-3Q3SY46 172 aa10.37□□□□□ -0.75
VIM-209ENST00000544301 SACSQ9NZJ4 4579 aa10.37□□□□□ -0.75
VIM-209ENST00000544301 LINC00313P59037 77 aa10.34□□□□□ -0.75
VIM-209ENST00000544301 PKHD1P08F94 4074 aa10.33□□□□□ -0.76
VIM-209ENST00000544301 LOC101927531A0A1B0GV80 90 aa10.33□□□□□ -0.76
VIM-209ENST00000544301 COA5Q86WW8 74 aa10.33□□□□□ -0.76
VIM-209ENST00000544301 Q8N9P0 234 aaPredicted RBP10.31□□□□□ -0.76
VIM-209ENST00000544301 PLA2G1BP04054 148 aaKnown RBP10.31□□□□□ -0.76
VIM-209ENST00000544301 LIMD2Q9BT23 127 aa10.3□□□□□ -0.76
VIM-209ENST00000544301 V9GYY9 64 aa10.3□□□□□ -0.76
VIM-209ENST00000544301 PSPHP1O15172 72 aa10.3□□□□□ -0.76
VIM-209ENST00000544301 BRK1Q8WUW1 75 aa10.3□□□□□ -0.76
VIM-209ENST00000544301 TYMSOSQ8TAI1 123 aa10.26□□□□□ -0.77
VIM-209ENST00000544301 C4orf48Q5BLP8 95 aa10.24□□□□□ -0.77
VIM-209ENST00000544301 DYNC1H1Q14204 4646 aaKnown RBP10.24□□□□□ -0.77
VIM-209ENST00000544301 A8MUN3 132 aa10.24□□□□□ -0.77
VIM-209ENST00000544301 KRTAP16-1A8MUX0 517 aa10.24□□□□□ -0.77
VIM-209ENST00000544301 FAM229AH3BQW9 127 aa10.22□□□□□ -0.77
VIM-209ENST00000544301 HRES1P13985 223 aa10.21□□□□□ -0.77
VIM-209ENST00000544301 SPINK1P00995 79 aa10.21□□□□□ -0.78
VIM-209ENST00000544301 SEC61GP60059 68 aa10.2□□□□□ -0.78
VIM-209ENST00000544301 RETNLBQ9BQ08 111 aa10.19□□□□□ -0.78
VIM-209ENST00000544301 Q5VV11 94 aa10.18□□□□□ -0.78
VIM-209ENST00000544301 PRR26Q8N8Z3 221 aa10.16□□□□□ -0.78
VIM-209ENST00000544301 SMR3BP02814 79 aaPredicted RBP10.15□□□□□ -0.79
VIM-209ENST00000544301 A0A1B0GVY2 172 aa10.14□□□□□ -0.79
VIM-209ENST00000544301 PRR15LQ9BU68 103 aa10.14□□□□□ -0.79
VIM-209ENST00000544301 IGKV2-30P06310 120 aa10.13□□□□□ -0.79
VIM-209ENST00000544301 LINC00304Q8N9R0 145 aa10.12□□□□□ -0.79
VIM-209ENST00000544301 APOBP04114 4563 aaKnown RBP10.11□□□□□ -0.79
VIM-209ENST00000544301 RPS29P62273 56 aaKnown RBP10.09□□□□□ -0.79
VIM-209ENST00000544301 SPAG11AQ6PDA7 123 aa10.09□□□□□ -0.79
VIM-209ENST00000544301 ACYP2P14621 99 aa10.07□□□□□ -0.8
VIM-209ENST00000544301 LINC01558Q9Y6Z2 57 aa10.07□□□□□ -0.8
VIM-209ENST00000544301 FAT1Q14517 4588 aa10.07□□□□□ -0.8
VIM-209ENST00000544301 CHKB-CPT1BH3BT56 60 aa10.06□□□□□ -0.8
VIM-209ENST00000544301 DMAC1Q96GE9 116 aa10.06□□□□□ -0.8
VIM-209ENST00000544301 RYR2Q92736 4967 aa10.06□□□□□ -0.8
VIM-209ENST00000544301 KRTAP10-4P60372 401 aaPredicted RBP10.05□□□□□ -0.8
VIM-209ENST00000544301 Q75L30 129 aa10.04□□□□□ -0.8
VIM-209ENST00000544301 PKHD1L1Q86WI1 4243 aa10.02□□□□□ -0.8
VIM-209ENST00000544301 IGKV2D-30A0A075B6S6 120 aa10.01□□□□□ -0.81
VIM-209ENST00000544301 A8MU10 97 aa9.97□□□□□ -0.81
VIM-209ENST00000544301 KMT2CQ8NEZ4 4911 aaKnown RBP9.94□□□□□ -0.82
VIM-209ENST00000544301 A6NED7 52 aa9.93□□□□□ -0.82
VIM-209ENST00000544301 LCA10Q71F78 164 aa9.89□□□□□ -0.83
VIM-209ENST00000544301 PMAIP1Q13794 54 aa9.88□□□□□ -0.83
VIM-209ENST00000544301 C9orf92A6NGG3 77 aa9.86□□□□□ -0.83
VIM-209ENST00000544301 C7orf65Q6ZTY9 151 aa9.86□□□□□ -0.83
VIM-209ENST00000544301 SPINK7P58062 85 aa9.83□□□□□ -0.84
VIM-209ENST00000544301 C20orf166-AS1Q96NR2 134 aa9.83□□□□□ -0.84
VIM-209ENST00000544301 A8MUU9 505 aa9.83□□□□□ -0.84
VIM-209ENST00000544301 CDC42SE1Q9NRR8 79 aa9.82□□□□□ -0.84
VIM-209ENST00000544301 ATP11AUNQ6ZP68 121 aa9.76□□□□□ -0.85
VIM-209ENST00000544301 Q8N1X5 172 aa9.75□□□□□ -0.85
VIM-209ENST00000544301 SPTSSBQ8NFR3 76 aa9.74□□□□□ -0.85
VIM-209ENST00000544301 A0A1B0GU69 56 aa9.73□□□□□ -0.85
VIM-209ENST00000544301 TNXBP22105 4242 aa9.72□□□□□ -0.85
VIM-209ENST00000544301 FLG2Q5D862 2391 aaPredicted RBP9.71□□□□□ -0.85
VIM-209ENST00000544301 FAT3Q8TDW7 4589 aa9.7□□□□□ -0.86
VIM-209ENST00000544301 HSPG2P98160 4391 aa9.7□□□□□ -0.86
VIM-209ENST00000544301 LRP1Q07954 4544 aaKnown RBP9.69□□□□□ -0.86
VIM-209ENST00000544301 KRTAP10-8P60410 259 aa9.67□□□□□ -0.86
VIM-209ENST00000544301 Q5VSD8 79 aa9.65□□□□□ -0.86
VIM-209ENST00000544301 RYR3Q15413 4870 aa9.65□□□□□ -0.87
VIM-209ENST00000544301 RYR1P21817 5038 aa9.61□□□□□ -0.87
VIM-209ENST00000544301 A6NN06 94 aa9.6□□□□□ -0.87
VIM-209ENST00000544301 KRTAP3-1Q9BYR8 98 aa9.6□□□□□ -0.87
VIM-209ENST00000544301 KTN1-AS1Q86SY8 53 aa9.55□□□□□ -0.88
VIM-209ENST00000544301 SPATA8Q6RVD6 105 aa9.54□□□□□ -0.88
VIM-209ENST00000544301 UQCR11O14957 56 aa9.53□□□□□ -0.88
VIM-209ENST00000544301 KRTAP17-1Q9BYP8 105 aa9.53□□□□□ -0.88
VIM-209ENST00000544301 MIR22HGQ0VDD5 57 aa9.5□□□□□ -0.89
VIM-209ENST00000544301 RBM12B-AS1Q9P1G2 102 aa9.49□□□□□ -0.89
VIM-209ENST00000544301 COX6B2Q6YFQ2 88 aa9.46□□□□□ -0.89
VIM-209ENST00000544301 DMBT1Q9UGM3 2413 aaPredicted RBP9.43□□□□□ -0.9
VIM-209ENST00000544301 RPL37P61927 97 aaKnown RBP9.43□□□□□ -0.9
VIM-209ENST00000544301 KIAA1109Q2LD37 5005 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms