RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PSMB2P49721 201 aa6.72□□□□□ -1.33
RTN3-213ENST00000543552 LINC00313P59037 77 aa6.72□□□□□ -1.33
RTN3-213ENST00000543552 TRACP01848 142 aa6.69□□□□□ -1.34
RTN3-213ENST00000543552 C9orf118A6NHY6 69 aa6.68□□□□□ -1.34
RTN3-213ENST00000543552 CCKP06307 115 aa6.68□□□□□ -1.34
RTN3-213ENST00000543552 FAM236DA0A1B0GTK5 79 aa6.67□□□□□ -1.34
RTN3-213ENST00000543552 FAM236CP0DP71 79 aa6.67□□□□□ -1.34
RTN3-213ENST00000543552 C5orf47Q569G3 176 aa6.67□□□□□ -1.34
RTN3-213ENST00000543552 RBM12B-AS1Q9P1G2 102 aa6.66□□□□□ -1.34
RTN3-213ENST00000543552 KRTAP16-1A8MUX0 517 aa6.65□□□□□ -1.34
RTN3-213ENST00000543552 K7ERJ3 54 aa6.65□□□□□ -1.34
RTN3-213ENST00000543552 IGHV6-1A0A0B4J1U7 121 aa6.64□□□□□ -1.35
RTN3-213ENST00000543552 LINC00472Q9H8W2 130 aa6.64□□□□□ -1.35
RTN3-213ENST00000543552 C8orf87E5RJ46 101 aa6.62□□□□□ -1.35
RTN3-213ENST00000543552 DEFB116Q30KQ4 102 aa6.62□□□□□ -1.35
RTN3-213ENST00000543552 DSCR8Q96T75 97 aa6.61□□□□□ -1.35
RTN3-213ENST00000543552 KRTAP9-8Q9BYQ0 159 aa6.61□□□□□ -1.35
RTN3-213ENST00000543552 A0A1W2PPM0 123 aa6.6□□□□□ -1.35
RTN3-213ENST00000543552 F8W1H4 67 aa6.6□□□□□ -1.35
RTN3-213ENST00000543552 SCGB1C2P0DMR2 95 aa6.6□□□□□ -1.35
RTN3-213ENST00000543552 RBM3P98179 157 aaKnown RBP6.6□□□□□ -1.35
RTN3-213ENST00000543552 SMIM20Q8N5G0 67 aa6.6□□□□□ -1.35
RTN3-213ENST00000543552 SPCS1Q9Y6A9 102 aa6.6□□□□□ -1.35
RTN3-213ENST00000543552 A0A1B0GVX0 72 aa6.59□□□□□ -1.35
RTN3-213ENST00000543552 J3KT08 172 aa6.59□□□□□ -1.35
RTN3-213ENST00000543552 NOTCH2NLQ7Z3S9 236 aa6.59□□□□□ -1.35
RTN3-213ENST00000543552 ANAPC13Q9BS18 74 aa6.59□□□□□ -1.35
RTN3-213ENST00000543552 USH2AO75445 5202 aa6.57□□□□□ -1.36
RTN3-213ENST00000543552 MPLKIPQ8TAP9 179 aa6.57□□□□□ -1.36
RTN3-213ENST00000543552 HRES1P13985 223 aa6.56□□□□□ -1.36
RTN3-213ENST00000543552 C9JAW5 83 aa6.55□□□□□ -1.36
RTN3-213ENST00000543552 NDUFB1O75438 58 aa6.53□□□□□ -1.36
RTN3-213ENST00000543552 ZCCHC13Q8WW36 166 aaKnown RBP6.53□□□□□ -1.36
RTN3-213ENST00000543552 SSPOA2VEC9 5147 aa6.52□□□□□ -1.37
RTN3-213ENST00000543552 MT2AP02795 61 aa6.52□□□□□ -1.37
RTN3-213ENST00000543552 BAALC-AS2P0C853 105 aa6.52□□□□□ -1.37
RTN3-213ENST00000543552 Q6ZQT0 140 aa6.51□□□□□ -1.37
RTN3-213ENST00000543552 A0A1B0GW54 56 aa6.5□□□□□ -1.37
RTN3-213ENST00000543552 JMJD7-PLA2G4BH0Y9G9 81 aa6.49□□□□□ -1.37
RTN3-213ENST00000543552 SPINK7P58062 85 aa6.48□□□□□ -1.37
RTN3-213ENST00000543552 KRTAP10-10P60014 251 aa6.48□□□□□ -1.37
RTN3-213ENST00000543552 MT-ATP8P03928 68 aa6.47□□□□□ -1.37
RTN3-213ENST00000543552 PDE6GP18545 87 aa6.47□□□□□ -1.37
RTN3-213ENST00000543552 ATXN8Q156A1 80 aa6.47□□□□□ -1.37
RTN3-213ENST00000543552 LYRM7Q5U5X0 104 aa6.47□□□□□ -1.37
RTN3-213ENST00000543552 A8MWP4 228 aa6.46□□□□□ -1.38
RTN3-213ENST00000543552 MT1FP04733 61 aa6.46□□□□□ -1.38
RTN3-213ENST00000543552 Q8N9P0 234 aaPredicted RBP6.46□□□□□ -1.38
RTN3-213ENST00000543552 LOC110117498A0A087WWA1 95 aa6.45□□□□□ -1.38
RTN3-213ENST00000543552 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.45□□□□□ -1.38
RTN3-213ENST00000543552 PRO0461Q9UI25 63 aa6.45□□□□□ -1.38
RTN3-213ENST00000543552 ETDBQ3ZM63 59 aa6.44□□□□□ -1.38
RTN3-213ENST00000543552 C8orf17Q9NRJ1 99 aa6.44□□□□□ -1.38
RTN3-213ENST00000543552 KRTAP9-7A8MTY7 169 aa6.42□□□□□ -1.38
RTN3-213ENST00000543552 CCDC179H3BU77 68 aa6.42□□□□□ -1.38
RTN3-213ENST00000543552 RPS28P62857 69 aaKnown RBP6.42□□□□□ -1.38
RTN3-213ENST00000543552 FCGBPQ9Y6R7 5405 aaPredicted RBP6.42□□□□□ -1.38
RTN3-213ENST00000543552 WFDC13Q8IUB5 93 aa6.41□□□□□ -1.38
RTN3-213ENST00000543552 NAA38Q9BRA0 125 aaKnown RBP6.41□□□□□ -1.38
RTN3-213ENST00000543552 KRTAP9-3Q9BYQ3 159 aa6.41□□□□□ -1.38
RTN3-213ENST00000543552 Q6ZVQ6 151 aa6.4□□□□□ -1.38
RTN3-213ENST00000543552 IGKV3D-7A0A0C4DH55 119 aa6.39□□□□□ -1.39
RTN3-213ENST00000543552 LCE2BO14633 110 aa6.39□□□□□ -1.39
RTN3-213ENST00000543552 NREPQ16612 68 aa6.38□□□□□ -1.39
RTN3-213ENST00000543552 C14orf132Q9NPU4 83 aa6.38□□□□□ -1.39
RTN3-213ENST00000543552 PRR15Q8IV56 129 aa6.37□□□□□ -1.39
RTN3-213ENST00000543552 LINC00846Q9NV44 126 aa6.37□□□□□ -1.39
RTN3-213ENST00000543552 KRTAP19-1Q8IUB9 90 aa6.36□□□□□ -1.39
RTN3-213ENST00000543552 TMEM254Q8TBM7 123 aa6.35□□□□□ -1.39
RTN3-213ENST00000543552 MRPL34Q9BQ48 92 aaKnown RBP6.33□□□□□ -1.4
RTN3-213ENST00000543552 MMP24-AS1A0A0U1RRL7 71 aa6.31□□□□□ -1.4
RTN3-213ENST00000543552 hDV103S1A0JD37 113 aa6.3□□□□□ -1.4
RTN3-213ENST00000543552 NDUFS5O43920 106 aa6.3□□□□□ -1.4
RTN3-213ENST00000543552 SMCPP49901 116 aaPredicted RBP6.3□□□□□ -1.4
RTN3-213ENST00000543552 H3BT86 120 aa6.28□□□□□ -1.4
RTN3-213ENST00000543552 H1FX-AS1Q4G0G2 97 aa6.28□□□□□ -1.4
RTN3-213ENST00000543552 IMUPQ9GZP8 106 aa6.28□□□□□ -1.4
RTN3-213ENST00000543552 K7EQZ3 153 aa6.27□□□□□ -1.41
RTN3-213ENST00000543552 UQCRQO14949 82 aa6.27□□□□□ -1.41
RTN3-213ENST00000543552 BPY2O14599 106 aa6.25□□□□□ -1.41
RTN3-213ENST00000543552 PRO0628Q9UI54 55 aa6.25□□□□□ -1.41
RTN3-213ENST00000543552 FAM240AA0A1B0GVK7 77 aa6.24□□□□□ -1.41
RTN3-213ENST00000543552 SEC61GP60059 68 aa6.24□□□□□ -1.41
RTN3-213ENST00000543552 C7orf65Q6ZTY9 151 aa6.24□□□□□ -1.41
RTN3-213ENST00000543552 IGKV2D-30A0A075B6S6 120 aa6.23□□□□□ -1.41
RTN3-213ENST00000543552 IGKV2-30P06310 120 aa6.23□□□□□ -1.41
RTN3-213ENST00000543552 KRTAP19-6Q3LI70 58 aa6.23□□□□□ -1.41
RTN3-213ENST00000543552 TMEM258P61165 79 aa6.22□□□□□ -1.41
RTN3-213ENST00000543552 MACF1Q9UPN3 7388 aaKnown RBP6.22□□□□□ -1.41
RTN3-213ENST00000543552 CASC2Q6XLA1 102 aa6.19□□□□□ -1.42
RTN3-213ENST00000543552 V9GYY9 64 aa6.19□□□□□ -1.42
RTN3-213ENST00000543552 COX7CP15954 63 aa6.18□□□□□ -1.42
RTN3-213ENST00000543552 ACYP1P07311 99 aa6.17□□□□□ -1.42
RTN3-213ENST00000543552 CXCL6P80162 114 aa6.16□□□□□ -1.42
RTN3-213ENST00000543552 Q5W150 140 aa6.16□□□□□ -1.42
RTN3-213ENST00000543552 HCG22E2RYF7 251 aa6.15□□□□□ -1.42
RTN3-213ENST00000543552 FAM236AA0A1B0GUQ0 79 aa6.14□□□□□ -1.43
RTN3-213ENST00000543552 FAM236BA0A1B0GV22 79 aa6.14□□□□□ -1.43
RTN3-213ENST00000543552 ATOX1O00244 68 aa6.14□□□□□ -1.43
RTN3-213ENST00000543552 Q8N9L7 120 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms