RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 LINC00575Q6W349 94 aa8.07□□□□□ -1.12
RTN3-211ENST00000542238 ATP11AUNQ6ZP68 121 aa8.07□□□□□ -1.12
RTN3-211ENST00000542238 SS18L2Q9UHA2 77 aa8.05□□□□□ -1.12
RTN3-211ENST00000542238 FAM236AA0A1B0GUQ0 79 aa8.04□□□□□ -1.12
RTN3-211ENST00000542238 FAM236BA0A1B0GV22 79 aa8.04□□□□□ -1.12
RTN3-211ENST00000542238 Q6JHZ5 121 aa8.04□□□□□ -1.12
RTN3-211ENST00000542238 ORMDL1Q9P0S3 153 aa8.04□□□□□ -1.12
RTN3-211ENST00000542238 hADV29S1A0JD25 119 aa8.03□□□□□ -1.12
RTN3-211ENST00000542238 KRTAP9-7A8MTY7 169 aa8.02□□□□□ -1.13
RTN3-211ENST00000542238 HIST1H4AP62805 103 aaKnown RBP8.02□□□□□ -1.13
RTN3-211ENST00000542238 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.01□□□□□ -1.13
RTN3-211ENST00000542238 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.01□□□□□ -1.13
RTN3-211ENST00000542238 Q75L30 129 aa8.01□□□□□ -1.13
RTN3-211ENST00000542238 GHRHP01286 108 aa8□□□□□ -1.13
RTN3-211ENST00000542238 C14orf132Q9NPU4 83 aa8□□□□□ -1.13
RTN3-211ENST00000542238 JMJD7-PLA2G4BH0Y9G9 81 aa7.98□□□□□ -1.13
RTN3-211ENST00000542238 H3BQ85 93 aa7.98□□□□□ -1.13
RTN3-211ENST00000542238 ATOX1O00244 68 aa7.97□□□□□ -1.13
RTN3-211ENST00000542238 UQCRQO14949 82 aa7.97□□□□□ -1.13
RTN3-211ENST00000542238 CCKP06307 115 aa7.97□□□□□ -1.13
RTN3-211ENST00000542238 ATP5EP2Q5VTU8 51 aa7.96□□□□□ -1.14
RTN3-211ENST00000542238 Q6ZQY7 126 aa7.96□□□□□ -1.14
RTN3-211ENST00000542238 TMEM256-PLSCR3K7ERE1 68 aa7.95□□□□□ -1.14
RTN3-211ENST00000542238 COX7CP15954 63 aa7.95□□□□□ -1.14
RTN3-211ENST00000542238 IGFL1Q6UW32 110 aa7.95□□□□□ -1.14
RTN3-211ENST00000542238 SVIPQ8NHG7 77 aa7.95□□□□□ -1.14
RTN3-211ENST00000542238 LINC00846Q9NV44 126 aa7.95□□□□□ -1.14
RTN3-211ENST00000542238 Q96NJ1 140 aa7.94□□□□□ -1.14
RTN3-211ENST00000542238 KRTAP9-8Q9BYQ0 159 aa7.92□□□□□ -1.14
RTN3-211ENST00000542238 USH2AO75445 5202 aa7.9□□□□□ -1.14
RTN3-211ENST00000542238 IGKV3D-7A0A0C4DH55 119 aa7.9□□□□□ -1.14
RTN3-211ENST00000542238 SSPOA2VEC9 5147 aa7.89□□□□□ -1.15
RTN3-211ENST00000542238 LOC110117498A0A087WWA1 95 aa7.89□□□□□ -1.15
RTN3-211ENST00000542238 SERP2Q8N6R1 65 aa7.87□□□□□ -1.15
RTN3-211ENST00000542238 PDE6GP18545 87 aa7.86□□□□□ -1.15
RTN3-211ENST00000542238 C20orf166-AS1Q96NR2 134 aa7.86□□□□□ -1.15
RTN3-211ENST00000542238 Q6ZQT0 140 aa7.85□□□□□ -1.15
RTN3-211ENST00000542238 SMIM20Q8N5G0 67 aa7.85□□□□□ -1.15
RTN3-211ENST00000542238 RBM3P98179 157 aaKnown RBP7.84□□□□□ -1.15
RTN3-211ENST00000542238 UBL5Q9BZL1 73 aa7.84□□□□□ -1.15
RTN3-211ENST00000542238 A8MUU9 505 aa7.83□□□□□ -1.16
RTN3-211ENST00000542238 A0A087WVE0 104 aa7.81□□□□□ -1.16
RTN3-211ENST00000542238 FAM236DA0A1B0GTK5 79 aa7.79□□□□□ -1.16
RTN3-211ENST00000542238 FAM236CP0DP71 79 aa7.79□□□□□ -1.16
RTN3-211ENST00000542238 TMEM258P61165 79 aa7.79□□□□□ -1.16
RTN3-211ENST00000542238 MT2AP02795 61 aa7.78□□□□□ -1.16
RTN3-211ENST00000542238 DSCR8Q96T75 97 aa7.78□□□□□ -1.16
RTN3-211ENST00000542238 FCGBPQ9Y6R7 5405 aaPredicted RBP7.78□□□□□ -1.16
RTN3-211ENST00000542238 J3KT08 172 aa7.77□□□□□ -1.17
RTN3-211ENST00000542238 RPS28P62857 69 aaKnown RBP7.77□□□□□ -1.17
RTN3-211ENST00000542238 TRBV7-4A0A0J9YYF1 115 aa7.76□□□□□ -1.17
RTN3-211ENST00000542238 CXCL6P80162 114 aa7.75□□□□□ -1.17
RTN3-211ENST00000542238 Q6ZVQ6 151 aa7.75□□□□□ -1.17
RTN3-211ENST00000542238 KRTAP19-1Q8IUB9 90 aa7.75□□□□□ -1.17
RTN3-211ENST00000542238 A0A087WSZ3 146 aa7.74□□□□□ -1.17
RTN3-211ENST00000542238 DSCR10P59022 87 aa7.74□□□□□ -1.17
RTN3-211ENST00000542238 RBM12B-AS1Q9P1G2 102 aa7.73□□□□□ -1.17
RTN3-211ENST00000542238 LCE2BO14633 110 aa7.72□□□□□ -1.17
RTN3-211ENST00000542238 KRTAP10-10P60014 251 aa7.72□□□□□ -1.17
RTN3-211ENST00000542238 CYSTM1Q9H1C7 97 aa7.72□□□□□ -1.17
RTN3-211ENST00000542238 TRAV7A0A075B6U4 112 aa7.71□□□□□ -1.18
RTN3-211ENST00000542238 MT1FP04733 61 aa7.71□□□□□ -1.18
RTN3-211ENST00000542238 A0A1B0GW54 56 aa7.7□□□□□ -1.18
RTN3-211ENST00000542238 LINC00313P59037 77 aa7.69□□□□□ -1.18
RTN3-211ENST00000542238 KRTAP16-1A8MUX0 517 aa7.68□□□□□ -1.18
RTN3-211ENST00000542238 KRTAP9-3Q9BYQ3 159 aa7.68□□□□□ -1.18
RTN3-211ENST00000542238 A0A1W2PNM2 257 aa7.65□□□□□ -1.18
RTN3-211ENST00000542238 MPLKIPQ8TAP9 179 aa7.65□□□□□ -1.18
RTN3-211ENST00000542238 HRES1P13985 223 aa7.64□□□□□ -1.19
RTN3-211ENST00000542238 MACF1Q9UPN3 7388 aaKnown RBP7.63□□□□□ -1.19
RTN3-211ENST00000542238 IGKV4-1P06312 121 aa7.63□□□□□ -1.19
RTN3-211ENST00000542238 SYNE2Q8WXH0 6885 aaKnown RBP7.63□□□□□ -1.19
RTN3-211ENST00000542238 KLKP1Q107X0 134 aa7.62□□□□□ -1.19
RTN3-211ENST00000542238 C20orf197Q8N268 126 aa7.62□□□□□ -1.19
RTN3-211ENST00000542238 NOTCH2NLQ7Z3S9 236 aa7.59□□□□□ -1.19
RTN3-211ENST00000542238 H7BZZ5 65 aa7.58□□□□□ -1.2
RTN3-211ENST00000542238 NDUFC1O43677 76 aa7.58□□□□□ -1.2
RTN3-211ENST00000542238 ATP5EP56381 51 aaPredicted RBP7.56□□□□□ -1.2
RTN3-211ENST00000542238 NREPQ16612 68 aa7.56□□□□□ -1.2
RTN3-211ENST00000542238 SERP1Q9Y6X1 66 aa7.56□□□□□ -1.2
RTN3-211ENST00000542238 IGHV6-1A0A0B4J1U7 121 aa7.55□□□□□ -1.2
RTN3-211ENST00000542238 DEFB116Q30KQ4 102 aa7.54□□□□□ -1.2
RTN3-211ENST00000542238 BPY2O14599 106 aa7.53□□□□□ -1.2
RTN3-211ENST00000542238 KRTAP19-6Q3LI70 58 aa7.52□□□□□ -1.21
RTN3-211ENST00000542238 C5orf47Q569G3 176 aa7.52□□□□□ -1.21
RTN3-211ENST00000542238 LINC00472Q9H8W2 130 aa7.51□□□□□ -1.21
RTN3-211ENST00000542238 OCR1Q9BZK8 76 aa7.5□□□□□ -1.21
RTN3-211ENST00000542238 SNURFQ9Y675 71 aa7.49□□□□□ -1.21
RTN3-211ENST00000542238 C8orf87E5RJ46 101 aa7.48□□□□□ -1.21
RTN3-211ENST00000542238 TMEM254Q8TBM7 123 aa7.48□□□□□ -1.21
RTN3-211ENST00000542238 A8MWP4 228 aa7.46□□□□□ -1.22
RTN3-211ENST00000542238 SPINK7P58062 85 aa7.46□□□□□ -1.22
RTN3-211ENST00000542238 Q8N9L7 120 aa7.46□□□□□ -1.22
RTN3-211ENST00000542238 ZCCHC13Q8WW36 166 aaKnown RBP7.46□□□□□ -1.22
RTN3-211ENST00000542238 A0A1B0GVX0 72 aa7.45□□□□□ -1.22
RTN3-211ENST00000542238 SMIM26A0A096LP01 95 aa7.42□□□□□ -1.22
RTN3-211ENST00000542238 C4orf26Q17RF5 130 aa7.39□□□□□ -1.23
RTN3-211ENST00000542238 KRTAP6-3Q3LI67 103 aa7.39□□□□□ -1.23
RTN3-211ENST00000542238 Q8N9P0 234 aaPredicted RBP7.38□□□□□ -1.23
RTN3-211ENST00000542238 WFDC13Q8IUB5 93 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms