RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 COA5Q86WW8 74 aa7.47□□□□□ -1.21
RNF4-222ENST00000541204 A8MU10 97 aa7.46□□□□□ -1.21
RNF4-222ENST00000541204 WWC2-AS2Q96NR7 200 aa7.46□□□□□ -1.21
RNF4-222ENST00000541204 TP53AIP1Q9HCN2 124 aa7.46□□□□□ -1.21
RNF4-222ENST00000541204 CD164Q04900 197 aa7.46□□□□□ -1.22
RNF4-222ENST00000541204 A0A1B0GVX0 72 aa7.45□□□□□ -1.22
RNF4-222ENST00000541204 DNAH11Q96DT5 4516 aa7.44□□□□□ -1.22
RNF4-222ENST00000541204 CIRBP-AS1Q8TBR5 109 aa7.44□□□□□ -1.22
RNF4-222ENST00000541204 LIMD2Q9BT23 127 aa7.44□□□□□ -1.22
RNF4-222ENST00000541204 PRR15LQ9BU68 103 aa7.44□□□□□ -1.22
RNF4-222ENST00000541204 ZNF706Q9Y5V0 76 aaPredicted RBP7.43□□□□□ -1.22
RNF4-222ENST00000541204 A0A087X002 238 aa7.43□□□□□ -1.22
RNF4-222ENST00000541204 CHKB-CPT1BH3BT56 60 aa7.43□□□□□ -1.22
RNF4-222ENST00000541204 NOTCH2NLQ7Z3S9 236 aa7.43□□□□□ -1.22
RNF4-222ENST00000541204 CDK2AP2O75956 126 aa7.42□□□□□ -1.22
RNF4-222ENST00000541204 DNAH5Q8TE73 4624 aa7.42□□□□□ -1.22
RNF4-222ENST00000541204 IGLV7-43P04211 117 aa7.42□□□□□ -1.22
RNF4-222ENST00000541204 MRPL34Q9BQ48 92 aaKnown RBP7.41□□□□□ -1.22
RNF4-222ENST00000541204 KRTAP10-1P60331 282 aa7.39□□□□□ -1.23
RNF4-222ENST00000541204 SPINK6Q6UWN8 80 aa7.37□□□□□ -1.23
RNF4-222ENST00000541204 PMAIP1Q13794 54 aa7.36□□□□□ -1.23
RNF4-222ENST00000541204 SPAG11AQ6PDA7 123 aa7.36□□□□□ -1.23
RNF4-222ENST00000541204 LRP1BQ9NZR2 4599 aa7.35□□□□□ -1.23
RNF4-222ENST00000541204 ALMS1Q8TCU4 4167 aa7.35□□□□□ -1.23
RNF4-222ENST00000541204 LOC101927531A0A1B0GV80 90 aa7.34□□□□□ -1.23
RNF4-222ENST00000541204 Q75L30 129 aa7.34□□□□□ -1.23
RNF4-222ENST00000541204 PKD1P98161 4303 aa7.34□□□□□ -1.23
RNF4-222ENST00000541204 FAT2Q9NYQ8 4349 aa7.34□□□□□ -1.23
RNF4-222ENST00000541204 HRES1P13985 223 aa7.33□□□□□ -1.24
RNF4-222ENST00000541204 A6NED7 52 aa7.33□□□□□ -1.24
RNF4-222ENST00000541204 Q5W150 140 aa7.32□□□□□ -1.24
RNF4-222ENST00000541204 LCA10Q71F78 164 aa7.32□□□□□ -1.24
RNF4-222ENST00000541204 SPTSSBQ8NFR3 76 aa7.3□□□□□ -1.24
RNF4-222ENST00000541204 LINC01558Q9Y6Z2 57 aa7.3□□□□□ -1.24
RNF4-222ENST00000541204 KRTAP21-3Q3LHN1 58 aa7.28□□□□□ -1.24
RNF4-222ENST00000541204 Q6ZSA8 131 aa7.28□□□□□ -1.24
RNF4-222ENST00000541204 KRTAP13-3Q3SY46 172 aa7.27□□□□□ -1.25
RNF4-222ENST00000541204 PKHD1P08F94 4074 aa7.26□□□□□ -1.25
RNF4-222ENST00000541204 SEC61GP60059 68 aa7.24□□□□□ -1.25
RNF4-222ENST00000541204 KRTAP13-2Q52LG2 175 aa7.24□□□□□ -1.25
RNF4-222ENST00000541204 PRR26Q8N8Z3 221 aa7.24□□□□□ -1.25
RNF4-222ENST00000541204 ATP11AUNQ6ZP68 121 aa7.23□□□□□ -1.25
RNF4-222ENST00000541204 CDC42SE1Q9NRR8 79 aa7.23□□□□□ -1.25
RNF4-222ENST00000541204 VPS13BQ7Z7G8 4022 aa7.22□□□□□ -1.25
RNF4-222ENST00000541204 C4orf48Q5BLP8 95 aa7.22□□□□□ -1.25
RNF4-222ENST00000541204 SPINK7P58062 85 aa7.22□□□□□ -1.25
RNF4-222ENST00000541204 SSBP3-AS1Q7Z2R9 100 aa7.21□□□□□ -1.25
RNF4-222ENST00000541204 SACSQ9NZJ4 4579 aa7.21□□□□□ -1.25
RNF4-222ENST00000541204 RETNLBQ9BQ08 111 aa7.2□□□□□ -1.26
RNF4-222ENST00000541204 C8orf87E5RJ46 101 aa7.19□□□□□ -1.26
RNF4-222ENST00000541204 SMR3BP02814 79 aaPredicted RBP7.19□□□□□ -1.26
RNF4-222ENST00000541204 LINC00313P59037 77 aa7.19□□□□□ -1.26
RNF4-222ENST00000541204 ACYP2P14621 99 aa7.17□□□□□ -1.26
RNF4-222ENST00000541204 PLA2G1BP04054 148 aaKnown RBP7.17□□□□□ -1.26
RNF4-222ENST00000541204 KRTAP1-4P0C5Y4 121 aa7.17□□□□□ -1.26
RNF4-222ENST00000541204 A6NN06 94 aa7.16□□□□□ -1.26
RNF4-222ENST00000541204 KTN1-AS1Q86SY8 53 aa7.16□□□□□ -1.26
RNF4-222ENST00000541204 FAM229AH3BQW9 127 aa7.14□□□□□ -1.27
RNF4-222ENST00000541204 DMAC1Q96GE9 116 aa7.13□□□□□ -1.27
RNF4-222ENST00000541204 TYMSOSQ8TAI1 123 aa7.11□□□□□ -1.27
RNF4-222ENST00000541204 DYNC1H1Q14204 4646 aaKnown RBP7.1□□□□□ -1.27
RNF4-222ENST00000541204 IGKV2-30P06310 120 aa7.1□□□□□ -1.27
RNF4-222ENST00000541204 KMT2CQ8NEZ4 4911 aaKnown RBP7.08□□□□□ -1.28
RNF4-222ENST00000541204 FAT1Q14517 4588 aa7.08□□□□□ -1.28
RNF4-222ENST00000541204 KRTAP16-1A8MUX0 517 aa7.08□□□□□ -1.28
RNF4-222ENST00000541204 IGKV2D-30A0A075B6S6 120 aa7.04□□□□□ -1.28
RNF4-222ENST00000541204 A0A1B0GU69 56 aa7.03□□□□□ -1.28
RNF4-222ENST00000541204 A0A1B0GVY2 172 aa7.03□□□□□ -1.28
RNF4-222ENST00000541204 C7orf65Q6ZTY9 151 aa7.03□□□□□ -1.28
RNF4-222ENST00000541204 RBM12B-AS1Q9P1G2 102 aa7.03□□□□□ -1.28
RNF4-222ENST00000541204 RYR2Q92736 4967 aa7.03□□□□□ -1.28
RNF4-222ENST00000541204 LINC00304Q8N9R0 145 aa6.99□□□□□ -1.29
RNF4-222ENST00000541204 SPINK1P00995 79 aa6.99□□□□□ -1.29
RNF4-222ENST00000541204 APOBP04114 4563 aaKnown RBP6.98□□□□□ -1.29
RNF4-222ENST00000541204 KRTAP10-4P60372 401 aaPredicted RBP6.93□□□□□ -1.3
RNF4-222ENST00000541204 SPATA8Q6RVD6 105 aa6.93□□□□□ -1.3
RNF4-222ENST00000541204 MIR22HGQ0VDD5 57 aa6.91□□□□□ -1.3
RNF4-222ENST00000541204 UQCR11O14957 56 aa6.91□□□□□ -1.3
RNF4-222ENST00000541204 C9orf92A6NGG3 77 aa6.9□□□□□ -1.3
RNF4-222ENST00000541204 Q8N1X5 172 aa6.89□□□□□ -1.31
RNF4-222ENST00000541204 PRAC1Q96KF2 57 aa6.88□□□□□ -1.31
RNF4-222ENST00000541204 ADM2Q7Z4H4 148 aa6.87□□□□□ -1.31
RNF4-222ENST00000541204 RYR3Q15413 4870 aa6.86□□□□□ -1.31
RNF4-222ENST00000541204 LRP1Q07954 4544 aaKnown RBP6.83□□□□□ -1.32
RNF4-222ENST00000541204 RPS29P62273 56 aaKnown RBP6.82□□□□□ -1.32
RNF4-222ENST00000541204 PKHD1L1Q86WI1 4243 aa6.79□□□□□ -1.32
RNF4-222ENST00000541204 FLG2Q5D862 2391 aaPredicted RBP6.78□□□□□ -1.32
RNF4-222ENST00000541204 Q5VSD8 79 aa6.78□□□□□ -1.32
RNF4-222ENST00000541204 HSPG2P98160 4391 aa6.75□□□□□ -1.33
RNF4-222ENST00000541204 DMBT1Q9UGM3 2413 aaPredicted RBP6.74□□□□□ -1.33
RNF4-222ENST00000541204 KIAA1109Q2LD37 5005 aa6.72□□□□□ -1.33
RNF4-222ENST00000541204 KRTAP17-1Q9BYP8 105 aa6.72□□□□□ -1.33
RNF4-222ENST00000541204 A8MUU9 505 aa6.72□□□□□ -1.33
RNF4-222ENST00000541204 C20orf166-AS1Q96NR2 134 aa6.72□□□□□ -1.33
RNF4-222ENST00000541204 KRTAP3-1Q9BYR8 98 aa6.71□□□□□ -1.34
RNF4-222ENST00000541204 MYCBP2O75592 4640 aa6.68□□□□□ -1.34
RNF4-222ENST00000541204 RYR1P21817 5038 aa6.68□□□□□ -1.34
RNF4-222ENST00000541204 H0YAA0 97 aa6.68□□□□□ -1.34
RNF4-222ENST00000541204 TNXBP22105 4242 aa6.66□□□□□ -1.34
RNF4-222ENST00000541204 CSAG1Q6PB30 78 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms