RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 A0A087WSZ3 146 aa7.21□□□□□ -1.25
SNHG1-213ENST00000540725 H0YGX0 51 aa7.21□□□□□ -1.25
SNHG1-213ENST00000540725 FAM218AQ96MZ4 157 aa7.21□□□□□ -1.25
SNHG1-213ENST00000540725 USH2AO75445 5202 aa7.2□□□□□ -1.26
SNHG1-213ENST00000540725 KRTAP9-8Q9BYQ0 159 aa7.2□□□□□ -1.26
SNHG1-213ENST00000540725 SSPOA2VEC9 5147 aa7.18□□□□□ -1.26
SNHG1-213ENST00000540725 DSCR10P59022 87 aa7.18□□□□□ -1.26
SNHG1-213ENST00000540725 FAM240AA0A1B0GVK7 77 aa7.16□□□□□ -1.26
SNHG1-213ENST00000540725 A0A1B0GX51 115 aa7.15□□□□□ -1.26
SNHG1-213ENST00000540725 A0A1W2PNM2 257 aa7.14□□□□□ -1.27
SNHG1-213ENST00000540725 GHRHP01286 108 aa7.14□□□□□ -1.27
SNHG1-213ENST00000540725 ACYP1P07311 99 aa7.12□□□□□ -1.27
SNHG1-213ENST00000540725 KRTAP16-1A8MUX0 517 aa7.11□□□□□ -1.27
SNHG1-213ENST00000540725 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.11□□□□□ -1.27
SNHG1-213ENST00000540725 LINC00313P59037 77 aa7.11□□□□□ -1.27
SNHG1-213ENST00000540725 FAM236DA0A1B0GTK5 79 aa7.1□□□□□ -1.27
SNHG1-213ENST00000540725 BAALC-AS2P0C853 105 aa7.1□□□□□ -1.27
SNHG1-213ENST00000540725 FAM236CP0DP71 79 aa7.1□□□□□ -1.27
SNHG1-213ENST00000540725 IGKV4-1P06312 121 aa7.09□□□□□ -1.27
SNHG1-213ENST00000540725 KRTAP9-7A8MTY7 169 aa7.08□□□□□ -1.28
SNHG1-213ENST00000540725 MT2AP02795 61 aa7.08□□□□□ -1.28
SNHG1-213ENST00000540725 DNAL4O96015 105 aa7.08□□□□□ -1.28
SNHG1-213ENST00000540725 TRBV7-4A0A0J9YYF1 115 aa7.07□□□□□ -1.28
SNHG1-213ENST00000540725 A0A1B0GV72 72 aa7.07□□□□□ -1.28
SNHG1-213ENST00000540725 NOTCH2NLQ7Z3S9 236 aa7.07□□□□□ -1.28
SNHG1-213ENST00000540725 HRES1P13985 223 aa7.06□□□□□ -1.28
SNHG1-213ENST00000540725 MPLKIPQ8TAP9 179 aa7.06□□□□□ -1.28
SNHG1-213ENST00000540725 MT-ATP8P03928 68 aa7.05□□□□□ -1.28
SNHG1-213ENST00000540725 ORMDL1Q9P0S3 153 aa7.05□□□□□ -1.28
SNHG1-213ENST00000540725 RBM12B-AS1Q9P1G2 102 aa7.05□□□□□ -1.28
SNHG1-213ENST00000540725 FCGBPQ9Y6R7 5405 aaPredicted RBP7.05□□□□□ -1.28
SNHG1-213ENST00000540725 H3BQ85 93 aa7.04□□□□□ -1.28
SNHG1-213ENST00000540725 C21orf62-AS1Q17RA5 79 aa7.04□□□□□ -1.28
SNHG1-213ENST00000540725 DEFB116Q30KQ4 102 aa7.04□□□□□ -1.28
SNHG1-213ENST00000540725 MT1FP04733 61 aa7.03□□□□□ -1.28
SNHG1-213ENST00000540725 LINC00472Q9H8W2 130 aa7.03□□□□□ -1.28
SNHG1-213ENST00000540725 IGHV6-1A0A0B4J1U7 121 aa7.02□□□□□ -1.29
SNHG1-213ENST00000540725 TMEM256-PLSCR3K7ERE1 68 aa7.01□□□□□ -1.29
SNHG1-213ENST00000540725 CCKP06307 115 aa7.01□□□□□ -1.29
SNHG1-213ENST00000540725 IMUPQ9GZP8 106 aa7.01□□□□□ -1.29
SNHG1-213ENST00000540725 JMJD7-PLA2G4BH0Y9G9 81 aa7□□□□□ -1.29
SNHG1-213ENST00000540725 LINC00643Q86TS7 51 aa6.99□□□□□ -1.29
SNHG1-213ENST00000540725 KRTAP10-10P60014 251 aa6.98□□□□□ -1.29
SNHG1-213ENST00000540725 KRTAP9-3Q9BYQ3 159 aa6.97□□□□□ -1.29
SNHG1-213ENST00000540725 KRTAP19-1Q8IUB9 90 aa6.96□□□□□ -1.29
SNHG1-213ENST00000540725 A0A1B0GVX0 72 aa6.95□□□□□ -1.3
SNHG1-213ENST00000540725 C8orf87E5RJ46 101 aa6.95□□□□□ -1.3
SNHG1-213ENST00000540725 ZCCHC13Q8WW36 166 aaKnown RBP6.92□□□□□ -1.3
SNHG1-213ENST00000540725 PDE6GP18545 87 aa6.91□□□□□ -1.3
SNHG1-213ENST00000540725 C14orf132Q9NPU4 83 aa6.91□□□□□ -1.3
SNHG1-213ENST00000540725 LOC110117498A0A087WWA1 95 aa6.9□□□□□ -1.31
SNHG1-213ENST00000540725 RBM3P98179 157 aaKnown RBP6.9□□□□□ -1.31
SNHG1-213ENST00000540725 DSCR8Q96T75 97 aa6.89□□□□□ -1.31
SNHG1-213ENST00000540725 J3KT08 172 aa6.88□□□□□ -1.31
SNHG1-213ENST00000540725 SPINK7P58062 85 aa6.88□□□□□ -1.31
SNHG1-213ENST00000540725 ANAPC13Q9BS18 74 aa6.88□□□□□ -1.31
SNHG1-213ENST00000540725 ATP5EP2Q5VTU8 51 aa6.86□□□□□ -1.31
SNHG1-213ENST00000540725 LINC00846Q9NV44 126 aa6.85□□□□□ -1.31
SNHG1-213ENST00000540725 Q6ZQT0 140 aa6.84□□□□□ -1.31
SNHG1-213ENST00000540725 Q8N9P0 234 aaPredicted RBP6.84□□□□□ -1.31
SNHG1-213ENST00000540725 NDUFB1O75438 58 aa6.82□□□□□ -1.32
SNHG1-213ENST00000540725 HIST1H4AP62805 103 aaKnown RBP6.82□□□□□ -1.32
SNHG1-213ENST00000540725 MACF1Q9UPN3 7388 aaKnown RBP6.82□□□□□ -1.32
SNHG1-213ENST00000540725 WFDC13Q8IUB5 93 aa6.82□□□□□ -1.32
SNHG1-213ENST00000540725 UBL5Q9BZL1 73 aa6.81□□□□□ -1.32
SNHG1-213ENST00000540725 A8MWP4 228 aa6.8□□□□□ -1.32
SNHG1-213ENST00000540725 C8orf17Q9NRJ1 99 aa6.8□□□□□ -1.32
SNHG1-213ENST00000540725 FAM236AA0A1B0GUQ0 79 aa6.79□□□□□ -1.32
SNHG1-213ENST00000540725 FAM236BA0A1B0GV22 79 aa6.79□□□□□ -1.32
SNHG1-213ENST00000540725 A0A1B0GW54 56 aa6.79□□□□□ -1.32
SNHG1-213ENST00000540725 KRTAP19-6Q3LI70 58 aa6.78□□□□□ -1.32
SNHG1-213ENST00000540725 ATOX1O00244 68 aa6.77□□□□□ -1.33
SNHG1-213ENST00000540725 SYNE2Q8WXH0 6885 aaKnown RBP6.76□□□□□ -1.33
SNHG1-213ENST00000540725 IGKV3D-7A0A0C4DH55 119 aa6.75□□□□□ -1.33
SNHG1-213ENST00000540725 CXCL6P80162 114 aa6.75□□□□□ -1.33
SNHG1-213ENST00000540725 Q6ZVQ6 151 aa6.74□□□□□ -1.33
SNHG1-213ENST00000540725 UQCRQO14949 82 aa6.73□□□□□ -1.33
SNHG1-213ENST00000540725 CCDC179H3BU77 68 aa6.71□□□□□ -1.33
SNHG1-213ENST00000540725 COX7CP15954 63 aa6.7□□□□□ -1.34
SNHG1-213ENST00000540725 PRR15Q8IV56 129 aa6.7□□□□□ -1.34
SNHG1-213ENST00000540725 LOC100996750A0A140TA64 210 aa6.69□□□□□ -1.34
SNHG1-213ENST00000540725 KRTAP4-6Q9BYQ5 205 aa6.69□□□□□ -1.34
SNHG1-213ENST00000540725 SERP2Q8N6R1 65 aa6.68□□□□□ -1.34
SNHG1-213ENST00000540725 MMP24-AS1A0A0U1RRL7 71 aa6.67□□□□□ -1.34
SNHG1-213ENST00000540725 H1FX-AS1Q4G0G2 97 aa6.67□□□□□ -1.34
SNHG1-213ENST00000540725 TMEM254Q8TBM7 123 aa6.67□□□□□ -1.34
SNHG1-213ENST00000540725 MRPL34Q9BQ48 92 aaKnown RBP6.67□□□□□ -1.34
SNHG1-213ENST00000540725 NREPQ16612 68 aa6.66□□□□□ -1.34
SNHG1-213ENST00000540725 SMIM20Q8N5G0 67 aa6.66□□□□□ -1.34
SNHG1-213ENST00000540725 A0A087WVE0 104 aa6.65□□□□□ -1.35
SNHG1-213ENST00000540725 hDV103S1A0JD37 113 aa6.62□□□□□ -1.35
SNHG1-213ENST00000540725 NDUFS5O43920 106 aa6.62□□□□□ -1.35
SNHG1-213ENST00000540725 K7EQZ3 153 aa6.6□□□□□ -1.35
SNHG1-213ENST00000540725 IGKV2D-30A0A075B6S6 120 aa6.58□□□□□ -1.36
SNHG1-213ENST00000540725 TRAV7A0A075B6U4 112 aa6.58□□□□□ -1.36
SNHG1-213ENST00000540725 IGKV2-30P06310 120 aa6.58□□□□□ -1.36
SNHG1-213ENST00000540725 BPY2O14599 106 aa6.57□□□□□ -1.36
SNHG1-213ENST00000540725 KRTAP6-3Q3LI67 103 aa6.57□□□□□ -1.36
SNHG1-213ENST00000540725 C7orf65Q6ZTY9 151 aa6.57□□□□□ -1.36
SNHG1-213ENST00000540725 Q5W150 140 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms