RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TRAV22A0A0B4J277 110 aa9.99□□□□□ -0.81
USP28-208ENST00000540438 LINC00483Q53H64 154 aa9.98□□□□□ -0.81
USP28-208ENST00000540438 C8orf17Q9NRJ1 99 aa9.98□□□□□ -0.81
USP28-208ENST00000540438 PKD1P98161 4303 aa9.97□□□□□ -0.81
USP28-208ENST00000540438 ZNF706Q9Y5V0 76 aaPredicted RBP9.96□□□□□ -0.82
USP28-208ENST00000540438 BRK1Q8WUW1 75 aa9.95□□□□□ -0.82
USP28-208ENST00000540438 A0A1B0GVX0 72 aa9.93□□□□□ -0.82
USP28-208ENST00000540438 ATP5EP56381 51 aaPredicted RBP9.92□□□□□ -0.82
USP28-208ENST00000540438 SMR3BP02814 79 aaPredicted RBP9.92□□□□□ -0.82
USP28-208ENST00000540438 FAT1Q14517 4588 aa9.89□□□□□ -0.83
USP28-208ENST00000540438 Q5W150 140 aa9.88□□□□□ -0.83
USP28-208ENST00000540438 KRTAP13-2Q52LG2 175 aa9.87□□□□□ -0.83
USP28-208ENST00000540438 CD164Q04900 197 aa9.86□□□□□ -0.83
USP28-208ENST00000540438 MRPL34Q9BQ48 92 aaKnown RBP9.84□□□□□ -0.83
USP28-208ENST00000540438 A8MU10 97 aa9.82□□□□□ -0.84
USP28-208ENST00000540438 A8MUN3 132 aa9.82□□□□□ -0.84
USP28-208ENST00000540438 SACSQ9NZJ4 4579 aa9.8□□□□□ -0.84
USP28-208ENST00000540438 PLA2G1BP04054 148 aaKnown RBP9.77□□□□□ -0.85
USP28-208ENST00000540438 Q8N9P0 234 aaPredicted RBP9.77□□□□□ -0.85
USP28-208ENST00000540438 KMT2CQ8NEZ4 4911 aaKnown RBP9.75□□□□□ -0.85
USP28-208ENST00000540438 CYP4F30PQ9H0H9 118 aa9.75□□□□□ -0.85
USP28-208ENST00000540438 COA5Q86WW8 74 aa9.74□□□□□ -0.85
USP28-208ENST00000540438 ASB16-AS1Q495Z4 193 aa9.73□□□□□ -0.85
USP28-208ENST00000540438 C1orf195Q5TG92 126 aa9.72□□□□□ -0.85
USP28-208ENST00000540438 SPAG11AQ6PDA7 123 aa9.72□□□□□ -0.85
USP28-208ENST00000540438 DYNC1H1Q14204 4646 aaKnown RBP9.72□□□□□ -0.85
USP28-208ENST00000540438 PRR26Q8N8Z3 221 aa9.71□□□□□ -0.86
USP28-208ENST00000540438 KRTAP1-4P0C5Y4 121 aa9.7□□□□□ -0.86
USP28-208ENST00000540438 LINC00313P59037 77 aa9.69□□□□□ -0.86
USP28-208ENST00000540438 Q6ZSA8 131 aa9.69□□□□□ -0.86
USP28-208ENST00000540438 TP53AIP1Q9HCN2 124 aa9.69□□□□□ -0.86
USP28-208ENST00000540438 FLG2Q5D862 2391 aaPredicted RBP9.69□□□□□ -0.86
USP28-208ENST00000540438 SSBP3-AS1Q7Z2R9 100 aa9.69□□□□□ -0.86
USP28-208ENST00000540438 PRR15LQ9BU68 103 aa9.69□□□□□ -0.86
USP28-208ENST00000540438 TYMSOSQ8TAI1 123 aa9.66□□□□□ -0.86
USP28-208ENST00000540438 IGLV7-46A0A075B6I9 117 aa9.66□□□□□ -0.86
USP28-208ENST00000540438 H3BPC8 53 aa9.65□□□□□ -0.86
USP28-208ENST00000540438 PRO0628Q9UI54 55 aa9.65□□□□□ -0.86
USP28-208ENST00000540438 IGKV2D-30A0A075B6S6 120 aa9.64□□□□□ -0.87
USP28-208ENST00000540438 IGKV2-30P06310 120 aa9.64□□□□□ -0.87
USP28-208ENST00000540438 HRES1P13985 223 aa9.63□□□□□ -0.87
USP28-208ENST00000540438 Q1T7F1 81 aa9.63□□□□□ -0.87
USP28-208ENST00000540438 SPANXA2-OT1Q8N9U9 137 aa9.63□□□□□ -0.87
USP28-208ENST00000540438 CHKB-CPT1BH3BT56 60 aa9.63□□□□□ -0.87
USP28-208ENST00000540438 C4orf48Q5BLP8 95 aa9.62□□□□□ -0.87
USP28-208ENST00000540438 DMBT1Q9UGM3 2413 aaPredicted RBP9.62□□□□□ -0.87
USP28-208ENST00000540438 Q5VV11 94 aa9.59□□□□□ -0.87
USP28-208ENST00000540438 C9orf92A6NGG3 77 aa9.58□□□□□ -0.88
USP28-208ENST00000540438 LRP1Q07954 4544 aaKnown RBP9.55□□□□□ -0.88
USP28-208ENST00000540438 APOBP04114 4563 aaKnown RBP9.54□□□□□ -0.88
USP28-208ENST00000540438 KRTAP13-3Q3SY46 172 aa9.54□□□□□ -0.88
USP28-208ENST00000540438 SPTSSBQ8NFR3 76 aa9.52□□□□□ -0.89
USP28-208ENST00000540438 LOC101927531A0A1B0GV80 90 aa9.5□□□□□ -0.89
USP28-208ENST00000540438 A6NED7 52 aa9.5□□□□□ -0.89
USP28-208ENST00000540438 MYCBP2O75592 4640 aa9.48□□□□□ -0.89
USP28-208ENST00000540438 KRTAP16-1A8MUX0 517 aa9.47□□□□□ -0.89
USP28-208ENST00000540438 C8orf87E5RJ46 101 aa9.47□□□□□ -0.89
USP28-208ENST00000540438 SPINK1P00995 79 aa9.47□□□□□ -0.89
USP28-208ENST00000540438 LINC00304Q8N9R0 145 aa9.46□□□□□ -0.89
USP28-208ENST00000540438 RYR2Q92736 4967 aa9.46□□□□□ -0.9
USP28-208ENST00000540438 Q8N1X5 172 aa9.45□□□□□ -0.9
USP28-208ENST00000540438 LIMD2Q9BT23 127 aa9.44□□□□□ -0.9
USP28-208ENST00000540438 FAM229AH3BQW9 127 aa9.44□□□□□ -0.9
USP28-208ENST00000540438 SPINK7P58062 85 aa9.42□□□□□ -0.9
USP28-208ENST00000540438 LCA10Q71F78 164 aa9.4□□□□□ -0.9
USP28-208ENST00000540438 V9GYY9 64 aa9.39□□□□□ -0.91
USP28-208ENST00000540438 RYR3Q15413 4870 aa9.37□□□□□ -0.91
USP28-208ENST00000540438 ACYP2P14621 99 aa9.36□□□□□ -0.91
USP28-208ENST00000540438 C7orf65Q6ZTY9 151 aa9.36□□□□□ -0.91
USP28-208ENST00000540438 PMAIP1Q13794 54 aa9.33□□□□□ -0.92
USP28-208ENST00000540438 A0A1B0GVY2 172 aa9.31□□□□□ -0.92
USP28-208ENST00000540438 PKHD1L1Q86WI1 4243 aa9.3□□□□□ -0.92
USP28-208ENST00000540438 LINC01558Q9Y6Z2 57 aa9.3□□□□□ -0.92
USP28-208ENST00000540438 KIAA1109Q2LD37 5005 aa9.29□□□□□ -0.92
USP28-208ENST00000540438 DMAC1Q96GE9 116 aa9.29□□□□□ -0.92
USP28-208ENST00000540438 Q75L30 129 aa9.28□□□□□ -0.92
USP28-208ENST00000540438 KRTAP10-4P60372 401 aaPredicted RBP9.26□□□□□ -0.93
USP28-208ENST00000540438 FAT3Q8TDW7 4589 aa9.25□□□□□ -0.93
USP28-208ENST00000540438 HSPG2P98160 4391 aa9.2□□□□□ -0.94
USP28-208ENST00000540438 KRTAP21-3Q3LHN1 58 aa9.2□□□□□ -0.94
USP28-208ENST00000540438 A0A1B0GU69 56 aa9.19□□□□□ -0.94
USP28-208ENST00000540438 KRTAP17-1Q9BYP8 105 aa9.19□□□□□ -0.94
USP28-208ENST00000540438 CDC42SE1Q9NRR8 79 aa9.12□□□□□ -0.95
USP28-208ENST00000540438 Q5VSD8 79 aa9.1□□□□□ -0.95
USP28-208ENST00000540438 EPPK1P58107 5090 aaKnown RBP9.1□□□□□ -0.95
USP28-208ENST00000540438 TNXBP22105 4242 aa9.07□□□□□ -0.96
USP28-208ENST00000540438 RYR1P21817 5038 aa9.05□□□□□ -0.96
USP28-208ENST00000540438 KRTAP3-1Q9BYR8 98 aa9.05□□□□□ -0.96
USP28-208ENST00000540438 LPAP08519 4548 aa9.04□□□□□ -0.96
USP28-208ENST00000540438 ATP11AUNQ6ZP68 121 aa9.04□□□□□ -0.96
USP28-208ENST00000540438 A8MUU9 505 aa9.01□□□□□ -0.97
USP28-208ENST00000540438 C20orf166-AS1Q96NR2 134 aa8.99□□□□□ -0.97
USP28-208ENST00000540438 ADM2Q7Z4H4 148 aa8.98□□□□□ -0.97
USP28-208ENST00000540438 A6NN06 94 aa8.97□□□□□ -0.97
USP28-208ENST00000540438 RPS29P62273 56 aaKnown RBP8.97□□□□□ -0.97
USP28-208ENST00000540438 LRP2P98164 4655 aa8.96□□□□□ -0.98
USP28-208ENST00000540438 PRAC1Q96KF2 57 aa8.96□□□□□ -0.98
USP28-208ENST00000540438 MIR22HGQ0VDD5 57 aa8.95□□□□□ -0.98
USP28-208ENST00000540438 ABCA13Q86UQ4 5058 aa8.94□□□□□ -0.98
USP28-208ENST00000540438 UQCR11O14957 56 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms