RNA–Protein interactions for RNA: ENST00000539680.1

ECHDC2-222, Transcript of enoyl-CoA hydratase domain containing 2, human

Gene ECHDC2, Length 5,817 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-222	ENST00000539680	KRTAP15-1	Q3LI76	137 aa		4.29	□□□□□ -1.72
ECHDC2-222	ENST00000539680	ITPR2	Q14571	2701 aa		4.28	□□□□□ -1.72
ECHDC2-222	ENST00000539680	TEX15	Q9BXT5	2789 aa		4.27	□□□□□ -1.73
ECHDC2-222	ENST00000539680	HIVEP1	P15822	2718 aa		4.27	□□□□□ -1.73
ECHDC2-222	ENST00000539680	CFAP54	Q96N23	3096 aa		4.27	□□□□□ -1.73
ECHDC2-222	ENST00000539680	REV3L	O60673	3130 aa		4.26	□□□□□ -1.73
ECHDC2-222	ENST00000539680	PRRC2C	Q9Y520	2896 aa	Known RBP	4.26	□□□□□ -1.73
ECHDC2-222	ENST00000539680	NBEA	Q8NFP9	2946 aa		4.26	□□□□□ -1.73
ECHDC2-222	ENST00000539680	DNAH14	Q0VDD8	3507 aa		4.26	□□□□□ -1.73
ECHDC2-222	ENST00000539680	UNC80	Q8N2C7	3258 aa		4.25	□□□□□ -1.73
ECHDC2-222	ENST00000539680	FLG2	Q5D862	2391 aa	Predicted RBP	4.25	□□□□□ -1.73
ECHDC2-222	ENST00000539680	EYS	Q5T1H1	3165 aa		4.23	□□□□□ -1.73
ECHDC2-222	ENST00000539680	KRTAP3-1	Q9BYR8	98 aa		4.23	□□□□□ -1.73
ECHDC2-222	ENST00000539680	WDFY3	Q8IZQ1	3526 aa		4.22	□□□□□ -1.73
ECHDC2-222	ENST00000539680	TENM4	Q6N022	2769 aa		4.22	□□□□□ -1.73
ECHDC2-222	ENST00000539680	NSD1	Q96L73	2696 aa	Predicted RBP	4.21	□□□□□ -1.74
ECHDC2-222	ENST00000539680	MYO15A	Q9UKN7	3530 aa		4.2	□□□□□ -1.74
ECHDC2-222	ENST00000539680	INE1	O15225	51 aa		4.2	□□□□□ -1.74
ECHDC2-222	ENST00000539680	WDFY4	Q6ZS81	3184 aa		4.2	□□□□□ -1.74
ECHDC2-222	ENST00000539680	FRY	Q5TBA9	3013 aa		4.19	□□□□□ -1.74
ECHDC2-222	ENST00000539680	DMD	P11532	3685 aa		4.17	□□□□□ -1.74
ECHDC2-222	ENST00000539680	APC	P25054	2843 aa		4.17	□□□□□ -1.74
ECHDC2-222	ENST00000539680	SPEG	Q15772	3267 aa		4.16	□□□□□ -1.74
ECHDC2-222	ENST00000539680	FLNC	Q14315	2725 aa		4.15	□□□□□ -1.74
ECHDC2-222	ENST00000539680	VPS13A	Q96RL7	3174 aa		4.14	□□□□□ -1.75
ECHDC2-222	ENST00000539680	KRTAP10-6	P60371	365 aa	Predicted RBP	4.14	□□□□□ -1.75
ECHDC2-222	ENST00000539680	UTP20	O75691	2785 aa	Known RBP	4.14	□□□□□ -1.75
ECHDC2-222	ENST00000539680	STAB2	Q8WWQ8	2551 aa		4.13	□□□□□ -1.75
ECHDC2-222	ENST00000539680	SPEN	Q96T58	3664 aa	Known RBP	4.13	□□□□□ -1.75
ECHDC2-222	ENST00000539680	TRIO	O75962	3097 aa		4.13	□□□□□ -1.75
ECHDC2-222	ENST00000539680	DMXL2	Q8TDJ6	3036 aa		4.13	□□□□□ -1.75
ECHDC2-222	ENST00000539680	DMXL1	Q9Y485	3027 aa		4.12	□□□□□ -1.75
ECHDC2-222	ENST00000539680	FRYL	O94915	3013 aa		4.12	□□□□□ -1.75
ECHDC2-222	ENST00000539680	MAP1A	P78559	2803 aa	Predicted RBP	4.11	□□□□□ -1.75
ECHDC2-222	ENST00000539680	LAMA1	P25391	3075 aa		4.1	□□□□□ -1.75
ECHDC2-222	ENST00000539680	NBEAL2	Q6ZNJ1	2754 aa		4.1	□□□□□ -1.75
ECHDC2-222	ENST00000539680	KRTAP23-1	A1A580	65 aa		4.1	□□□□□ -1.75
ECHDC2-222	ENST00000539680	ITPR1	Q14643	2758 aa		4.08	□□□□□ -1.76
ECHDC2-222	ENST00000539680	KRTAP10-12	P60413	245 aa		4.08	□□□□□ -1.76
ECHDC2-222	ENST00000539680	NOTCH1	P46531	2555 aa		4.07	□□□□□ -1.76
ECHDC2-222	ENST00000539680	FREM2	Q5SZK8	3169 aa		4.06	□□□□□ -1.76
ECHDC2-222	ENST00000539680	COL12A1	Q99715	3063 aa		4.05	□□□□□ -1.76
ECHDC2-222	ENST00000539680	ATM	Q13315	3056 aa		4.04	□□□□□ -1.76
ECHDC2-222	ENST00000539680	MT1HL1	P0DM35	61 aa		4.01	□□□□□ -1.77
ECHDC2-222	ENST00000539680	ALMS1	Q8TCU4	4167 aa		4.01	□□□□□ -1.77
ECHDC2-222	ENST00000539680	KALRN	O60229	2985 aa		4	□□□□□ -1.77
ECHDC2-222	ENST00000539680	CRYBG3	Q68DQ2	2970 aa		3.99	□□□□□ -1.77
ECHDC2-222	ENST00000539680	BSN	Q9UPA5	3926 aa		3.99	□□□□□ -1.77
ECHDC2-222	ENST00000539680	KRTAP3-2	Q9BYR7	98 aa		3.98	□□□□□ -1.77
ECHDC2-222	ENST00000539680	CELSR3	Q9NYQ7	3312 aa		3.97	□□□□□ -1.77
ECHDC2-222	ENST00000539680	PDZD2	O15018	2839 aa		3.97	□□□□□ -1.77
ECHDC2-222	ENST00000539680	KRTAP3-3	Q9BYR6	98 aa		3.97	□□□□□ -1.77
ECHDC2-222	ENST00000539680	KRTAP17-1	Q9BYP8	105 aa		3.96	□□□□□ -1.78
ECHDC2-222	ENST00000539680	HUWE1	Q7Z6Z7	4374 aa	Known RBP	3.95	□□□□□ -1.78
ECHDC2-222	ENST00000539680	LRBA	P50851	2863 aa		3.94	□□□□□ -1.78
ECHDC2-222	ENST00000539680	KRTAP12-3	P60328	96 aa		3.93	□□□□□ -1.78
ECHDC2-222	ENST00000539680	ZFHX4	Q86UP3	3567 aa		3.93	□□□□□ -1.78
ECHDC2-222	ENST00000539680	CFAP47	Q6ZTR5	3102 aa		3.93	□□□□□ -1.78
ECHDC2-222	ENST00000539680	FBN2	P35556	2912 aa		3.93	□□□□□ -1.78
ECHDC2-222	ENST00000539680	TACC2	O95359	2948 aa		3.92	□□□□□ -1.78
ECHDC2-222	ENST00000539680	ZFHX3	Q15911	3703 aa		3.91	□□□□□ -1.78
ECHDC2-222	ENST00000539680	DCHS1	Q96JQ0	3298 aa		3.9	□□□□□ -1.79
ECHDC2-222	ENST00000539680	BOD1L1	Q8NFC6	3051 aa		3.9	□□□□□ -1.79
ECHDC2-222	ENST00000539680	CRCT1	Q9UGL9	99 aa		3.9	□□□□□ -1.79
ECHDC2-222	ENST00000539680	MUC3A	Q02505	3323 aa		3.89	□□□□□ -1.79
ECHDC2-222	ENST00000539680	CELSR2	Q9HCU4	2923 aa		3.89	□□□□□ -1.79
ECHDC2-222	ENST00000539680	ASPM	Q8IZT6	3477 aa		3.88	□□□□□ -1.79
ECHDC2-222	ENST00000539680	KRTAP10-4	P60372	401 aa	Predicted RBP	3.88	□□□□□ -1.79
ECHDC2-222	ENST00000539680	NBPF19	A0A087WUL8	3843 aa		3.88	□□□□□ -1.79
ECHDC2-222	ENST00000539680	OTOG	Q6ZRI0	2925 aa		3.88	□□□□□ -1.79
ECHDC2-222	ENST00000539680	ZZEF1	O43149	2961 aa		3.87	□□□□□ -1.79
ECHDC2-222	ENST00000539680	ANK3	Q12955	4377 aa	Known RBP	3.87	□□□□□ -1.79
ECHDC2-222	ENST00000539680	NIPBL	Q6KC79	2804 aa	eCLIP	3.86	□□□□□ -1.79
ECHDC2-222	ENST00000539680	LCE3A	Q5TA76	89 aa		3.86	□□□□□ -1.79
ECHDC2-222	ENST00000539680	HRNR	Q86YZ3	2850 aa	Predicted RBP	3.85	□□□□□ -1.79
ECHDC2-222	ENST00000539680	MXRA5	Q9NR99	2828 aa		3.84	□□□□□ -1.8
ECHDC2-222	ENST00000539680	KRTAP9-6	A0A140TA67	174 aa		3.82	□□□□□ -1.8
ECHDC2-222	ENST00000539680	TENM2	Q9NT68	2774 aa		3.81	□□□□□ -1.8
ECHDC2-222	ENST00000539680	ADGRG4	Q8IZF6	3080 aa		3.8	□□□□□ -1.8
ECHDC2-222	ENST00000539680	TG	P01266	2768 aa		3.79	□□□□□ -1.8
ECHDC2-222	ENST00000539680	SMG1	Q96Q15	3661 aa	Known RBP	3.79	□□□□□ -1.8
ECHDC2-222	ENST00000539680	LOC400499	M0QZD8	3231 aa		3.77	□□□□□ -1.81
ECHDC2-222	ENST00000539680	NF1	P21359	2839 aa		3.76	□□□□□ -1.81
ECHDC2-222	ENST00000539680	KRTAP8-1	Q8IUC2	63 aa		3.76	□□□□□ -1.81
ECHDC2-222	ENST00000539680	LAMA5	O15230	3695 aa		3.75	□□□□□ -1.81
ECHDC2-222	ENST00000539680	VPS13C	Q709C8	3753 aa		3.74	□□□□□ -1.81
ECHDC2-222	ENST00000539680	KRTAP4-5	Q9BYR2	181 aa		3.74	□□□□□ -1.81
ECHDC2-222	ENST00000539680	ZAN	Q9Y493	2812 aa		3.73	□□□□□ -1.81
ECHDC2-222	ENST00000539680	BIRC6	Q9NR09	4857 aa		3.73	□□□□□ -1.81
ECHDC2-222	ENST00000539680	CSMD1	Q96PZ7	3565 aa		3.72	□□□□□ -1.81
ECHDC2-222	ENST00000539680	FBN1	P35555	2871 aa	Known RBP	3.72	□□□□□ -1.81
ECHDC2-222	ENST00000539680	DNAH2	Q9P225	4427 aa		3.71	□□□□□ -1.82
ECHDC2-222	ENST00000539680	DCHS2	Q6V1P9	2916 aa		3.71	□□□□□ -1.82
ECHDC2-222	ENST00000539680	KRTAP10-5	P60370	271 aa		3.68	□□□□□ -1.82
ECHDC2-222	ENST00000539680	LOR	P23490	312 aa	Predicted RBP	3.66	□□□□□ -1.82
ECHDC2-222	ENST00000539680	RELN	P78509	3460 aa		3.65	□□□□□ -1.82
ECHDC2-222	ENST00000539680	AKAP9	Q99996	3911 aa		3.64	□□□□□ -1.83
ECHDC2-222	ENST00000539680	TENM1	Q9UKZ4	2725 aa		3.63	□□□□□ -1.83
ECHDC2-222	ENST00000539680	TENM3	Q9P273	2699 aa		3.61	□□□□□ -1.83
ECHDC2-222	ENST00000539680	KRTAP19-4	Q3LI73	84 aa		3.61	□□□□□ -1.83

Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms