RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 HIVEP1P15822 2718 aa3.05□□□□□ -1.92
PTPRD-213ENST00000537002 COL6A3P12111 3177 aa3.04□□□□□ -1.92
PTPRD-213ENST00000537002 RPS29P62273 56 aaKnown RBP3.04□□□□□ -1.92
PTPRD-213ENST00000537002 CELSR3Q9NYQ7 3312 aa3.03□□□□□ -1.92
PTPRD-213ENST00000537002 ATMQ13315 3056 aa3.03□□□□□ -1.92
PTPRD-213ENST00000537002 NSD1Q96L73 2696 aaPredicted RBP3.02□□□□□ -1.93
PTPRD-213ENST00000537002 CFAP47Q6ZTR5 3102 aa3.02□□□□□ -1.93
PTPRD-213ENST00000537002 DMXL1Q9Y485 3027 aa3.02□□□□□ -1.93
PTPRD-213ENST00000537002 NOTCH1P46531 2555 aa3.02□□□□□ -1.93
PTPRD-213ENST00000537002 Q6ZSA8 131 aa3.02□□□□□ -1.93
PTPRD-213ENST00000537002 C20orf166-AS1Q96NR2 134 aa3.02□□□□□ -1.93
PTPRD-213ENST00000537002 NBEAL1Q6ZS30 2694 aa3.01□□□□□ -1.93
PTPRD-213ENST00000537002 UBR5O95071 2799 aaPredicted RBP3.01□□□□□ -1.93
PTPRD-213ENST00000537002 SPEGQ15772 3267 aa3.01□□□□□ -1.93
PTPRD-213ENST00000537002 Q5VSD8 79 aa3.01□□□□□ -1.93
PTPRD-213ENST00000537002 COL6A5A8TX70 2615 aa3□□□□□ -1.93
PTPRD-213ENST00000537002 LOC400499M0QZD8 3231 aa3□□□□□ -1.93
PTPRD-213ENST00000537002 H0YAA0 97 aa3□□□□□ -1.93
PTPRD-213ENST00000537002 C10orf95Q9H7T3 257 aa3□□□□□ -1.93
PTPRD-213ENST00000537002 FBN2P35556 2912 aa3□□□□□ -1.93
PTPRD-213ENST00000537002 SEC61BP60468 96 aaKnown RBP3□□□□□ -1.93
PTPRD-213ENST00000537002 CELSR2Q9HCU4 2923 aa2.99□□□□□ -1.93
PTPRD-213ENST00000537002 M0QZ58 72 aa2.99□□□□□ -1.93
PTPRD-213ENST00000537002 R4GN34 69 aa2.99□□□□□ -1.93
PTPRD-213ENST00000537002 STAB2Q8WWQ8 2551 aa2.99□□□□□ -1.93
PTPRD-213ENST00000537002 M0R2T5 61 aa2.99□□□□□ -1.93
PTPRD-213ENST00000537002 KRTAP10-2P60368 255 aa2.98□□□□□ -1.93
PTPRD-213ENST00000537002 WDFY3Q8IZQ1 3526 aa2.98□□□□□ -1.93
PTPRD-213ENST00000537002 KRTAP10-1P60331 282 aa2.97□□□□□ -1.93
PTPRD-213ENST00000537002 KRTAP13-2Q52LG2 175 aa2.97□□□□□ -1.93
PTPRD-213ENST00000537002 Q6ZRN7 208 aaPredicted RBP2.96□□□□□ -1.94
PTPRD-213ENST00000537002 MYO15AQ9UKN7 3530 aa2.96□□□□□ -1.94
PTPRD-213ENST00000537002 CELSR1Q9NYQ6 3014 aa2.95□□□□□ -1.94
PTPRD-213ENST00000537002 TENM3Q9P273 2699 aa2.95□□□□□ -1.94
PTPRD-213ENST00000537002 VWFP04275 2813 aa2.95□□□□□ -1.94
PTPRD-213ENST00000537002 SMG1Q96Q15 3661 aaKnown RBP2.94□□□□□ -1.94
PTPRD-213ENST00000537002 COL12A1Q99715 3063 aa2.93□□□□□ -1.94
PTPRD-213ENST00000537002 TENM2Q9NT68 2774 aa2.92□□□□□ -1.94
PTPRD-213ENST00000537002 FLG2Q5D862 2391 aaPredicted RBP2.92□□□□□ -1.94
PTPRD-213ENST00000537002 P0C880 135 aa2.92□□□□□ -1.94
PTPRD-213ENST00000537002 DMDP11532 3685 aa2.92□□□□□ -1.94
PTPRD-213ENST00000537002 ITPR2Q14571 2701 aa2.92□□□□□ -1.94
PTPRD-213ENST00000537002 ALMS1Q8TCU4 4167 aa2.91□□□□□ -1.94
PTPRD-213ENST00000537002 PLAC4Q8WY50 150 aa2.9□□□□□ -1.95
PTPRD-213ENST00000537002 KRTAP15-1Q3LI76 137 aa2.88□□□□□ -1.95
PTPRD-213ENST00000537002 ZFHX4Q86UP3 3567 aa2.88□□□□□ -1.95
PTPRD-213ENST00000537002 CRYBG3Q68DQ2 2970 aa2.87□□□□□ -1.95
PTPRD-213ENST00000537002 DCHS1Q96JQ0 3298 aa2.87□□□□□ -1.95
PTPRD-213ENST00000537002 TENM4Q6N022 2769 aa2.87□□□□□ -1.95
PTPRD-213ENST00000537002 TGP01266 2768 aa2.87□□□□□ -1.95
PTPRD-213ENST00000537002 TENM1Q9UKZ4 2725 aa2.85□□□□□ -1.95
PTPRD-213ENST00000537002 CSMD1Q96PZ7 3565 aa2.85□□□□□ -1.95
PTPRD-213ENST00000537002 SRRM2Q9UQ35 2752 aaKnown RBP2.85□□□□□ -1.95
PTPRD-213ENST00000537002 EYSQ5T1H1 3165 aa2.84□□□□□ -1.95
PTPRD-213ENST00000537002 DMBT1Q9UGM3 2413 aaPredicted RBP2.84□□□□□ -1.95
PTPRD-213ENST00000537002 BSNQ9UPA5 3926 aa2.84□□□□□ -1.95
PTPRD-213ENST00000537002 PDZD2O15018 2839 aa2.84□□□□□ -1.95
PTPRD-213ENST00000537002 SPENQ96T58 3664 aaKnown RBP2.83□□□□□ -1.96
PTPRD-213ENST00000537002 PP632Q6XCG6 107 aa2.83□□□□□ -1.96
PTPRD-213ENST00000537002 TPRXLQ17RH7 258 aa2.82□□□□□ -1.96
PTPRD-213ENST00000537002 PKD1L1Q8TDX9 2849 aa2.82□□□□□ -1.96
PTPRD-213ENST00000537002 PCLOQ9Y6V0 5065 aa2.81□□□□□ -1.96
PTPRD-213ENST00000537002 A0A1B0GVY2 172 aa2.8□□□□□ -1.96
PTPRD-213ENST00000537002 KRTAP1-4P0C5Y4 121 aa2.8□□□□□ -1.96
PTPRD-213ENST00000537002 KRTAP10-8P60410 259 aa2.8□□□□□ -1.96
PTPRD-213ENST00000537002 AKAP9Q99996 3911 aa2.79□□□□□ -1.96
PTPRD-213ENST00000537002 XP32Q5T750 250 aa2.78□□□□□ -1.96
PTPRD-213ENST00000537002 FBN3Q75N90 2809 aa2.78□□□□□ -1.96
PTPRD-213ENST00000537002 KRTAP3-1Q9BYR8 98 aa2.77□□□□□ -1.97
PTPRD-213ENST00000537002 KRTAP12-2P59991 146 aa2.76□□□□□ -1.97
PTPRD-213ENST00000537002 SVEP1Q4LDE5 3571 aa2.76□□□□□ -1.97
PTPRD-213ENST00000537002 LAMA5O15230 3695 aa2.76□□□□□ -1.97
PTPRD-213ENST00000537002 ASPMQ8IZT6 3477 aa2.76□□□□□ -1.97
PTPRD-213ENST00000537002 KRTAP10-6P60371 365 aaPredicted RBP2.75□□□□□ -1.97
PTPRD-213ENST00000537002 TNP1P09430 55 aa2.74□□□□□ -1.97
PTPRD-213ENST00000537002 RELNP78509 3460 aa2.73□□□□□ -1.97
PTPRD-213ENST00000537002 NBPF19A0A087WUL8 3843 aa2.71□□□□□ -1.98
PTPRD-213ENST00000537002 OTOGQ6ZRI0 2925 aa2.71□□□□□ -1.98
PTPRD-213ENST00000537002 KRTAP13-4Q3LI77 160 aa2.69□□□□□ -1.98
PTPRD-213ENST00000537002 KRTAP12-1P59990 96 aa2.69□□□□□ -1.98
PTPRD-213ENST00000537002 KRTAP3-2Q9BYR7 98 aa2.69□□□□□ -1.98
PTPRD-213ENST00000537002 MEGF8Q7Z7M0 2845 aa2.69□□□□□ -1.98
PTPRD-213ENST00000537002 ANK3Q12955 4377 aaKnown RBP2.67□□□□□ -1.98
PTPRD-213ENST00000537002 VPS13CQ709C8 3753 aa2.66□□□□□ -1.98
PTPRD-213ENST00000537002 KRTAP23-1A1A580 65 aa2.66□□□□□ -1.98
PTPRD-213ENST00000537002 MUC3AQ02505 3323 aa2.65□□□□□ -1.99
PTPRD-213ENST00000537002 KRTAP3-3Q9BYR6 98 aa2.64□□□□□ -1.99
PTPRD-213ENST00000537002 BIRC6Q9NR09 4857 aa2.62□□□□□ -1.99
PTPRD-213ENST00000537002 PRO2289Q9P1D8 64 aa2.61□□□□□ -1.99
PTPRD-213ENST00000537002 INE1O15225 51 aa2.61□□□□□ -1.99
PTPRD-213ENST00000537002 FBN1P35555 2871 aaKnown RBP2.59□□□□□ -1.99
PTPRD-213ENST00000537002 DNAH1Q9P2D7 4330 aa2.59□□□□□ -2
PTPRD-213ENST00000537002 TRRAPQ9Y4A5 3859 aa2.57□□□□□ -2
PTPRD-213ENST00000537002 COL7A1Q02388 2944 aa2.57□□□□□ -2
PTPRD-213ENST00000537002 DNAH3Q8TD57 4116 aa2.56□□□□□ -2
PTPRD-213ENST00000537002 CUBNO60494 3623 aa2.56□□□□□ -2
PTPRD-213ENST00000537002 DNHD1Q96M86 4753 aa2.55□□□□□ -2
PTPRD-213ENST00000537002 CSMD2Q7Z408 3487 aa2.53□□□□□ -2
PTPRD-213ENST00000537002 DYNC2H1Q8NCM8 4307 aaKnown RBP2.52□□□□□ -2.01
PTPRD-213ENST00000537002 DNAH17Q9UFH2 4485 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms