RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 A0A1B0GW54 56 aa3.54□□□□□ -1.84
CD44-221ENST00000526000 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
CD44-221ENST00000526000 F8W1H4 67 aa3.53□□□□□ -1.84
CD44-221ENST00000526000 IGFL1Q6UW32 110 aa3.53□□□□□ -1.84
CD44-221ENST00000526000 TEN1Q86WV5 123 aa3.53□□□□□ -1.84
CD44-221ENST00000526000 DSCR8Q96T75 97 aa3.53□□□□□ -1.84
CD44-221ENST00000526000 SS18L2Q9UHA2 77 aa3.53□□□□□ -1.84
CD44-221ENST00000526000 TRBV7-4A0A0J9YYF1 115 aa3.52□□□□□ -1.85
CD44-221ENST00000526000 OBSCN-AS1Q96MR7 158 aa3.52□□□□□ -1.85
CD44-221ENST00000526000 LOC110117498A0A087WWA1 95 aa3.51□□□□□ -1.85
CD44-221ENST00000526000 TRBV7-7A0A0K0K1E9 115 aa3.51□□□□□ -1.85
CD44-221ENST00000526000 PRO0461Q9UI25 63 aa3.5□□□□□ -1.85
CD44-221ENST00000526000 CCKP06307 115 aa3.49□□□□□ -1.85
CD44-221ENST00000526000 C1orf195Q5TG92 126 aa3.49□□□□□ -1.85
CD44-221ENST00000526000 A0A1W2PNM2 257 aa3.48□□□□□ -1.85
CD44-221ENST00000526000 RPL37P61927 97 aaKnown RBP3.48□□□□□ -1.85
CD44-221ENST00000526000 Q6ZQT0 140 aa3.48□□□□□ -1.85
CD44-221ENST00000526000 KRTAP4-7Q9BYR0 210 aa3.48□□□□□ -1.85
CD44-221ENST00000526000 KRTAP9-7A8MTY7 169 aa3.47□□□□□ -1.85
CD44-221ENST00000526000 A0A087WSZ3 146 aa3.46□□□□□ -1.86
CD44-221ENST00000526000 MTURNQ8N3F0 131 aa3.46□□□□□ -1.86
CD44-221ENST00000526000 C14orf132Q9NPU4 83 aa3.46□□□□□ -1.86
CD44-221ENST00000526000 A0A1B0GV72 72 aa3.45□□□□□ -1.86
CD44-221ENST00000526000 A0A1B0GV90 55 aa3.45□□□□□ -1.86
CD44-221ENST00000526000 VPS25Q9BRG1 176 aa3.45□□□□□ -1.86
CD44-221ENST00000526000 J3KT08 172 aa3.44□□□□□ -1.86
CD44-221ENST00000526000 ETDBQ3ZM63 59 aa3.44□□□□□ -1.86
CD44-221ENST00000526000 KRTAP19-1Q8IUB9 90 aa3.43□□□□□ -1.86
CD44-221ENST00000526000 FAM240AA0A1B0GVK7 77 aa3.42□□□□□ -1.86
CD44-221ENST00000526000 ACYP1P07311 99 aa3.42□□□□□ -1.86
CD44-221ENST00000526000 NREPQ16612 68 aa3.42□□□□□ -1.86
CD44-221ENST00000526000 LINC00472Q9H8W2 130 aa3.42□□□□□ -1.86
CD44-221ENST00000526000 J3QR89 54 aa3.41□□□□□ -1.86
CD44-221ENST00000526000 ATP11AUNQ6ZP68 121 aa3.41□□□□□ -1.86
CD44-221ENST00000526000 Q96NJ1 140 aa3.41□□□□□ -1.86
CD44-221ENST00000526000 NDUFB1O75438 58 aa3.4□□□□□ -1.87
CD44-221ENST00000526000 UBL5Q9BZL1 73 aa3.4□□□□□ -1.87
CD44-221ENST00000526000 FLGP20930 4061 aaPredicted RBP3.39□□□□□ -1.87
CD44-221ENST00000526000 IGKV4-1P06312 121 aa3.39□□□□□ -1.87
CD44-221ENST00000526000 SIGMAR1Q99720 223 aa3.39□□□□□ -1.87
CD44-221ENST00000526000 KRTAP9-8Q9BYQ0 159 aa3.39□□□□□ -1.87
CD44-221ENST00000526000 C8orf87E5RJ46 101 aa3.38□□□□□ -1.87
CD44-221ENST00000526000 A8MWP4 228 aa3.37□□□□□ -1.87
CD44-221ENST00000526000 BPY2O14599 106 aa3.37□□□□□ -1.87
CD44-221ENST00000526000 Q6ZVQ6 151 aa3.37□□□□□ -1.87
CD44-221ENST00000526000 LINC00846Q9NV44 126 aa3.37□□□□□ -1.87
CD44-221ENST00000526000 A0A1B0GVX0 72 aa3.36□□□□□ -1.87
CD44-221ENST00000526000 ATP5EP2Q5VTU8 51 aa3.36□□□□□ -1.87
CD44-221ENST00000526000 KRTAP4-2Q9BYR5 136 aa3.36□□□□□ -1.87
CD44-221ENST00000526000 LINC00313P59037 77 aa3.35□□□□□ -1.87
CD44-221ENST00000526000 CXCL6P80162 114 aa3.35□□□□□ -1.87
CD44-221ENST00000526000 Q75L30 129 aa3.35□□□□□ -1.87
CD44-221ENST00000526000 PRR15Q8IV56 129 aa3.35□□□□□ -1.87
CD44-221ENST00000526000 USH2AO75445 5202 aa3.34□□□□□ -1.87
CD44-221ENST00000526000 K7ERU9 68 aa3.34□□□□□ -1.87
CD44-221ENST00000526000 LCE1DQ5T752 114 aa3.34□□□□□ -1.87
CD44-221ENST00000526000 KRTAP5-3Q6L8H2 238 aa3.34□□□□□ -1.87
CD44-221ENST00000526000 SSPOA2VEC9 5147 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 IGHV6-1A0A0B4J1U7 121 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 FAM236DA0A1B0GTK5 79 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 MT2AP02795 61 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 FAM236CP0DP71 79 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 DSCR10P59022 87 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 DEFB116Q30KQ4 102 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 LINC00643Q86TS7 51 aa3.33□□□□□ -1.88
CD44-221ENST00000526000 IGKV3D-7A0A0C4DH55 119 aa3.32□□□□□ -1.88
CD44-221ENST00000526000 KRTAP10-10P60014 251 aa3.32□□□□□ -1.88
CD44-221ENST00000526000 C20orf166-AS1Q96NR2 134 aa3.32□□□□□ -1.88
CD44-221ENST00000526000 C8orf17Q9NRJ1 99 aa3.32□□□□□ -1.88
CD44-221ENST00000526000 A8MUU9 505 aa3.31□□□□□ -1.88
CD44-221ENST00000526000 KRTAP16-1A8MUX0 517 aa3.31□□□□□ -1.88
CD44-221ENST00000526000 MT1FP04733 61 aa3.31□□□□□ -1.88
CD44-221ENST00000526000 FCGBPQ9Y6R7 5405 aaPredicted RBP3.3□□□□□ -1.88
CD44-221ENST00000526000 K7EQZ3 153 aa3.3□□□□□ -1.88
CD44-221ENST00000526000 TMEM254Q8TBM7 123 aa3.3□□□□□ -1.88
CD44-221ENST00000526000 KRTAP9-3Q9BYQ3 159 aa3.3□□□□□ -1.88
CD44-221ENST00000526000 MMP24-AS1A0A0U1RRL7 71 aa3.29□□□□□ -1.88
CD44-221ENST00000526000 hDV103S1A0JD37 113 aa3.29□□□□□ -1.88
CD44-221ENST00000526000 Q8N9P0 234 aaPredicted RBP3.29□□□□□ -1.88
CD44-221ENST00000526000 KRTAP4-9Q9BYQ8 210 aa3.29□□□□□ -1.88
CD44-221ENST00000526000 HCG22E2RYF7 251 aa3.28□□□□□ -1.88
CD44-221ENST00000526000 MRPL34Q9BQ48 92 aaKnown RBP3.28□□□□□ -1.88
CD44-221ENST00000526000 CASC2Q6XLA1 102 aa3.27□□□□□ -1.89
CD44-221ENST00000526000 NOTCH2NLQ7Z3S9 236 aa3.27□□□□□ -1.89
CD44-221ENST00000526000 Q8N9L7 120 aa3.26□□□□□ -1.89
CD44-221ENST00000526000 IMUPQ9GZP8 106 aa3.26□□□□□ -1.89
CD44-221ENST00000526000 TP53AIP1Q9HCN2 124 aa3.25□□□□□ -1.89
CD44-221ENST00000526000 RBM12B-AS1Q9P1G2 102 aa3.25□□□□□ -1.89
CD44-221ENST00000526000 HRES1P13985 223 aa3.24□□□□□ -1.89
CD44-221ENST00000526000 HIST1H4AP62805 103 aaKnown RBP3.24□□□□□ -1.89
CD44-221ENST00000526000 WFDC13Q8IUB5 93 aa3.24□□□□□ -1.89
CD44-221ENST00000526000 ZCCHC13Q8WW36 166 aaKnown RBP3.24□□□□□ -1.89
CD44-221ENST00000526000 NDUFS5O43920 106 aa3.23□□□□□ -1.89
CD44-221ENST00000526000 SCGB1A1P11684 91 aa3.21□□□□□ -1.9
CD44-221ENST00000526000 MPLKIPQ8TAP9 179 aa3.21□□□□□ -1.9
CD44-221ENST00000526000 KRTAP19-6Q3LI70 58 aa3.2□□□□□ -1.9
CD44-221ENST00000526000 C5orf47Q569G3 176 aa3.2□□□□□ -1.9
CD44-221ENST00000526000 UQCRQO14949 82 aa3.19□□□□□ -1.9
CD44-221ENST00000526000 SMIM20Q8N5G0 67 aa3.19□□□□□ -1.9
CD44-221ENST00000526000 A0A087WVE0 104 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms