RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 NAA38Q9BRA0 125 aaKnown RBP8.51□□□□□ -1.05
LSM1-205ENST00000523511 C8orf87E5RJ46 101 aa8.5□□□□□ -1.05
LSM1-205ENST00000523511 NDUFB1O75438 58 aa8.49□□□□□ -1.05
LSM1-205ENST00000523511 Q6ZQT0 140 aa8.49□□□□□ -1.05
LSM1-205ENST00000523511 LOC110117498A0A087WWA1 95 aa8.47□□□□□ -1.05
LSM1-205ENST00000523511 A0A1B0GVX0 72 aa8.46□□□□□ -1.06
LSM1-205ENST00000523511 LOC105371267A0A1B0GV96 52 aa8.42□□□□□ -1.06
LSM1-205ENST00000523511 C9orf118A6NHY6 69 aa8.42□□□□□ -1.06
LSM1-205ENST00000523511 KRTAP16-1A8MUX0 517 aa8.42□□□□□ -1.06
LSM1-205ENST00000523511 NREPQ16612 68 aa8.4□□□□□ -1.06
LSM1-205ENST00000523511 NOTCH2NLQ7Z3S9 236 aa8.4□□□□□ -1.06
LSM1-205ENST00000523511 C14orf132Q9NPU4 83 aa8.4□□□□□ -1.06
LSM1-205ENST00000523511 H3BT86 120 aa8.38□□□□□ -1.07
LSM1-205ENST00000523511 A0A1W2PPM0 123 aa8.37□□□□□ -1.07
LSM1-205ENST00000523511 A8MWP4 228 aa8.36□□□□□ -1.07
LSM1-205ENST00000523511 RBM12B-AS1Q9P1G2 102 aa8.36□□□□□ -1.07
LSM1-205ENST00000523511 KRTAP10-6P60371 365 aaPredicted RBP8.35□□□□□ -1.07
LSM1-205ENST00000523511 FAM236DA0A1B0GTK5 79 aa8.34□□□□□ -1.07
LSM1-205ENST00000523511 TAX1BP3O14907 124 aa8.34□□□□□ -1.07
LSM1-205ENST00000523511 FAM236CP0DP71 79 aa8.34□□□□□ -1.07
LSM1-205ENST00000523511 LORP23490 312 aaPredicted RBP8.32□□□□□ -1.08
LSM1-205ENST00000523511 MTURNQ8N3F0 131 aa8.31□□□□□ -1.08
LSM1-205ENST00000523511 C8orf17Q9NRJ1 99 aa8.31□□□□□ -1.08
LSM1-205ENST00000523511 ZCCHC13Q8WW36 166 aaKnown RBP8.3□□□□□ -1.08
LSM1-205ENST00000523511 Q8N9P0 234 aaPredicted RBP8.29□□□□□ -1.08
LSM1-205ENST00000523511 KRTAP9-6A0A140TA67 174 aa8.28□□□□□ -1.08
LSM1-205ENST00000523511 PRR15Q8IV56 129 aa8.28□□□□□ -1.08
LSM1-205ENST00000523511 IGKV3D-7A0A0C4DH55 119 aa8.27□□□□□ -1.09
LSM1-205ENST00000523511 SPCS1Q9Y6A9 102 aa8.27□□□□□ -1.09
LSM1-205ENST00000523511 COL5A1-AS1Q5SY13 56 aa8.26□□□□□ -1.09
LSM1-205ENST00000523511 Q6ZVQ6 151 aa8.26□□□□□ -1.09
LSM1-205ENST00000523511 BPY2O14599 106 aa8.23□□□□□ -1.09
LSM1-205ENST00000523511 SPINK7P58062 85 aa8.22□□□□□ -1.09
LSM1-205ENST00000523511 HRES1P13985 223 aa8.21□□□□□ -1.1
LSM1-205ENST00000523511 TMEM254Q8TBM7 123 aa8.2□□□□□ -1.1
LSM1-205ENST00000523511 MRPL34Q9BQ48 92 aaKnown RBP8.2□□□□□ -1.1
LSM1-205ENST00000523511 MPLKIPQ8TAP9 179 aa8.19□□□□□ -1.1
LSM1-205ENST00000523511 hDV103S1A0JD37 113 aa8.18□□□□□ -1.1
LSM1-205ENST00000523511 FLGP20930 4061 aaPredicted RBP8.18□□□□□ -1.1
LSM1-205ENST00000523511 NDUFS5O43920 106 aa8.16□□□□□ -1.1
LSM1-205ENST00000523511 MMP24-AS1A0A0U1RRL7 71 aa8.15□□□□□ -1.1
LSM1-205ENST00000523511 K7EQZ3 153 aa8.15□□□□□ -1.1
LSM1-205ENST00000523511 CRCT1Q9UGL9 99 aa8.14□□□□□ -1.11
LSM1-205ENST00000523511 GTF2H5Q6ZYL4 71 aa8.13□□□□□ -1.11
LSM1-205ENST00000523511 UBL5Q9BZL1 73 aa8.13□□□□□ -1.11
LSM1-205ENST00000523511 FSIP2Q5CZC0 6907 aa8.13□□□□□ -1.11
LSM1-205ENST00000523511 K7EP34 96 aa8.12□□□□□ -1.11
LSM1-205ENST00000523511 SMCPP49901 116 aaPredicted RBP8.1□□□□□ -1.11
LSM1-205ENST00000523511 WFDC13Q8IUB5 93 aa8.09□□□□□ -1.11
LSM1-205ENST00000523511 CASC2Q6XLA1 102 aa8.07□□□□□ -1.12
LSM1-205ENST00000523511 F8W1H4 67 aa8.06□□□□□ -1.12
LSM1-205ENST00000523511 PRO0461Q9UI25 63 aa8.06□□□□□ -1.12
LSM1-205ENST00000523511 KRTAP9-8Q9BYQ0 159 aa8.05□□□□□ -1.12
LSM1-205ENST00000523511 PCP4L1A6NKN8 68 aa8.03□□□□□ -1.12
LSM1-205ENST00000523511 LINC00846Q9NV44 126 aa8.03□□□□□ -1.12
LSM1-205ENST00000523511 CXCL6P80162 114 aa8.01□□□□□ -1.13
LSM1-205ENST00000523511 Q8N9L7 120 aa8.01□□□□□ -1.13
LSM1-205ENST00000523511 HCG22E2RYF7 251 aa8□□□□□ -1.13
LSM1-205ENST00000523511 C7orf65Q6ZTY9 151 aa7.99□□□□□ -1.13
LSM1-205ENST00000523511 IGKV2D-30A0A075B6S6 120 aa7.98□□□□□ -1.13
LSM1-205ENST00000523511 IGKV2-30P06310 120 aa7.98□□□□□ -1.13
LSM1-205ENST00000523511 KRTAP10-10P60014 251 aa7.95□□□□□ -1.14
LSM1-205ENST00000523511 H1FX-AS1Q4G0G2 97 aa7.95□□□□□ -1.14
LSM1-205ENST00000523511 MT2AP02795 61 aa7.94□□□□□ -1.14
LSM1-205ENST00000523511 ETDBQ3ZM63 59 aa7.94□□□□□ -1.14
LSM1-205ENST00000523511 Q5W150 140 aa7.94□□□□□ -1.14
LSM1-205ENST00000523511 TP53AIP1Q9HCN2 124 aa7.9□□□□□ -1.14
LSM1-205ENST00000523511 ACYP1P07311 99 aa7.88□□□□□ -1.15
LSM1-205ENST00000523511 MT1FP04733 61 aa7.86□□□□□ -1.15
LSM1-205ENST00000523511 C4orf26Q17RF5 130 aa7.82□□□□□ -1.16
LSM1-205ENST00000523511 KRTAP9-3Q9BYQ3 159 aa7.79□□□□□ -1.16
LSM1-205ENST00000523511 FAM240AA0A1B0GVK7 77 aa7.77□□□□□ -1.17
LSM1-205ENST00000523511 ATP5EP2Q5VTU8 51 aa7.76□□□□□ -1.17
LSM1-205ENST00000523511 USH2AO75445 5202 aa7.74□□□□□ -1.17
LSM1-205ENST00000523511 C1orf64Q8NEQ6 169 aa7.72□□□□□ -1.17
LSM1-205ENST00000523511 LCE2BO14633 110 aa7.71□□□□□ -1.18
LSM1-205ENST00000523511 HIST1H4AP62805 103 aaKnown RBP7.7□□□□□ -1.18
LSM1-205ENST00000523511 TRAV22A0A0B4J277 110 aa7.67□□□□□ -1.18
LSM1-205ENST00000523511 S4R3F8 94 aa7.67□□□□□ -1.18
LSM1-205ENST00000523511 LOC101927531A0A1B0GV80 90 aa7.66□□□□□ -1.18
LSM1-205ENST00000523511 CSAG1Q6PB30 78 aa7.66□□□□□ -1.18
LSM1-205ENST00000523511 C5orf47Q569G3 176 aa7.65□□□□□ -1.18
LSM1-205ENST00000523511 LINC00643Q86TS7 51 aa7.64□□□□□ -1.19
LSM1-205ENST00000523511 CYP4F30PQ9H0H9 118 aa7.64□□□□□ -1.19
LSM1-205ENST00000523511 ATOX1O00244 68 aa7.63□□□□□ -1.19
LSM1-205ENST00000523511 UQCRQO14949 82 aa7.63□□□□□ -1.19
LSM1-205ENST00000523511 SSPOA2VEC9 5147 aa7.63□□□□□ -1.19
LSM1-205ENST00000523511 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
LSM1-205ENST00000523511 FAM236AA0A1B0GUQ0 79 aa7.6□□□□□ -1.19
LSM1-205ENST00000523511 FAM236BA0A1B0GV22 79 aa7.6□□□□□ -1.19
LSM1-205ENST00000523511 KRTAP19-1Q8IUB9 90 aa7.6□□□□□ -1.19
LSM1-205ENST00000523511 J3QR89 54 aa7.57□□□□□ -1.2
LSM1-205ENST00000523511 LCA10Q71F78 164 aa7.57□□□□□ -1.2
LSM1-205ENST00000523511 H0Y9P7 68 aa7.55□□□□□ -1.2
LSM1-205ENST00000523511 A0A1B0GV90 55 aa7.54□□□□□ -1.2
LSM1-205ENST00000523511 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.54□□□□□ -1.2
LSM1-205ENST00000523511 A0A087WVE0 104 aa7.5□□□□□ -1.21
LSM1-205ENST00000523511 KRTAP19-6Q3LI70 58 aa7.5□□□□□ -1.21
LSM1-205ENST00000523511 MP68P56378 58 aa7.49□□□□□ -1.21
LSM1-205ENST00000523511 FCGBPQ9Y6R7 5405 aaPredicted RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms