RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 A0A087X002 238 aa4.9□□□□□ -1.63
RNF4-220ENST00000513578 HCG22E2RYF7 251 aa4.9□□□□□ -1.63
RNF4-220ENST00000513578 KRTAP10-4P60372 401 aaPredicted RBP4.9□□□□□ -1.63
RNF4-220ENST00000513578 KRTAP4-5Q9BYR2 181 aa4.9□□□□□ -1.63
RNF4-220ENST00000513578 NDUFB1O75438 58 aa4.89□□□□□ -1.63
RNF4-220ENST00000513578 OCR1Q9BZK8 76 aa4.89□□□□□ -1.63
RNF4-220ENST00000513578 KRTAP29-1A8MX34 341 aaPredicted RBP4.88□□□□□ -1.63
RNF4-220ENST00000513578 FAM229AH3BQW9 127 aa4.88□□□□□ -1.63
RNF4-220ENST00000513578 DEFB116Q30KQ4 102 aa4.88□□□□□ -1.63
RNF4-220ENST00000513578 HRCT1Q6UXD1 115 aa4.88□□□□□ -1.63
RNF4-220ENST00000513578 PKHD1L1Q86WI1 4243 aa4.88□□□□□ -1.63
RNF4-220ENST00000513578 PLA2G1BP04054 148 aaKnown RBP4.87□□□□□ -1.63
RNF4-220ENST00000513578 CDK2AP2O75956 126 aa4.86□□□□□ -1.63
RNF4-220ENST00000513578 RPS29P62273 56 aaKnown RBP4.86□□□□□ -1.63
RNF4-220ENST00000513578 DMBT1Q9UGM3 2413 aaPredicted RBP4.86□□□□□ -1.63
RNF4-220ENST00000513578 A0A1B0GVX0 72 aa4.85□□□□□ -1.63
RNF4-220ENST00000513578 SMR3BP02814 79 aaPredicted RBP4.85□□□□□ -1.63
RNF4-220ENST00000513578 LIMD2Q9BT23 127 aa4.85□□□□□ -1.63
RNF4-220ENST00000513578 MMP24-AS1A0A0U1RRL7 71 aa4.84□□□□□ -1.63
RNF4-220ENST00000513578 SPINK1P00995 79 aa4.84□□□□□ -1.63
RNF4-220ENST00000513578 KLKP1Q107X0 134 aa4.84□□□□□ -1.63
RNF4-220ENST00000513578 SPAG11AQ6PDA7 123 aa4.84□□□□□ -1.63
RNF4-220ENST00000513578 CASC2Q6XLA1 102 aa4.84□□□□□ -1.63
RNF4-220ENST00000513578 TYMSOSQ8TAI1 123 aa4.84□□□□□ -1.63
RNF4-220ENST00000513578 WFDC13Q8IUB5 93 aa4.82□□□□□ -1.64
RNF4-220ENST00000513578 C8orf17Q9NRJ1 99 aa4.82□□□□□ -1.64
RNF4-220ENST00000513578 FAT1Q14517 4588 aa4.81□□□□□ -1.64
RNF4-220ENST00000513578 C8orf87E5RJ46 101 aa4.81□□□□□ -1.64
RNF4-220ENST00000513578 NDUFC1O43677 76 aa4.81□□□□□ -1.64
RNF4-220ENST00000513578 C5orf47Q569G3 176 aa4.81□□□□□ -1.64
RNF4-220ENST00000513578 C1orf195Q5TG92 126 aa4.81□□□□□ -1.64
RNF4-220ENST00000513578 C20orf197Q8N268 126 aa4.81□□□□□ -1.64
RNF4-220ENST00000513578 hDV103S1A0JD37 113 aa4.8□□□□□ -1.64
RNF4-220ENST00000513578 PRR26Q8N8Z3 221 aa4.8□□□□□ -1.64
RNF4-220ENST00000513578 LINC00304Q8N9R0 145 aa4.8□□□□□ -1.64
RNF4-220ENST00000513578 TMEM254Q8TBM7 123 aa4.8□□□□□ -1.64
RNF4-220ENST00000513578 A0A0U1RQV1 116 aa4.79□□□□□ -1.64
RNF4-220ENST00000513578 H3BS24 57 aa4.79□□□□□ -1.64
RNF4-220ENST00000513578 KRTAP4-12Q9BQ66 201 aa4.79□□□□□ -1.64
RNF4-220ENST00000513578 TP53AIP1Q9HCN2 124 aa4.79□□□□□ -1.64
RNF4-220ENST00000513578 IGHV6-1A0A0B4J1U7 121 aa4.78□□□□□ -1.64
RNF4-220ENST00000513578 H3BPC8 53 aa4.78□□□□□ -1.64
RNF4-220ENST00000513578 TMEM258P61165 79 aa4.78□□□□□ -1.64
RNF4-220ENST00000513578 MRPL34Q9BQ48 92 aaKnown RBP4.78□□□□□ -1.64
RNF4-220ENST00000513578 CYSTM1Q9H1C7 97 aa4.78□□□□□ -1.64
RNF4-220ENST00000513578 ZCCHC13Q8WW36 166 aaKnown RBP4.77□□□□□ -1.65
RNF4-220ENST00000513578 HSPG2P98160 4391 aa4.76□□□□□ -1.65
RNF4-220ENST00000513578 H7BZZ5 65 aa4.76□□□□□ -1.65
RNF4-220ENST00000513578 LCE3BQ5TA77 95 aa4.76□□□□□ -1.65
RNF4-220ENST00000513578 MP68P56378 58 aa4.75□□□□□ -1.65
RNF4-220ENST00000513578 Q5VSD8 79 aa4.75□□□□□ -1.65
RNF4-220ENST00000513578 LINC00313P59037 77 aa4.74□□□□□ -1.65
RNF4-220ENST00000513578 NOTCH2NLQ7Z3S9 236 aa4.74□□□□□ -1.65
RNF4-220ENST00000513578 SNURFQ9Y675 71 aa4.74□□□□□ -1.65
RNF4-220ENST00000513578 KRTAP10-8P60410 259 aa4.73□□□□□ -1.65
RNF4-220ENST00000513578 TRAV22A0A0B4J277 110 aa4.72□□□□□ -1.65
RNF4-220ENST00000513578 H0Y9P7 68 aa4.72□□□□□ -1.65
RNF4-220ENST00000513578 ATP5EP56381 51 aaPredicted RBP4.72□□□□□ -1.65
RNF4-220ENST00000513578 Q8N9P0 234 aaPredicted RBP4.72□□□□□ -1.65
RNF4-220ENST00000513578 KRTAP9-9Q9BYP9 154 aa4.72□□□□□ -1.65
RNF4-220ENST00000513578 KRTAP9-4Q9BYQ2 154 aa4.72□□□□□ -1.65
RNF4-220ENST00000513578 MUC2Q02817 5179 aa4.72□□□□□ -1.65
RNF4-220ENST00000513578 KRTAP16-1A8MUX0 517 aa4.71□□□□□ -1.66
RNF4-220ENST00000513578 KRTAP19-1Q8IUB9 90 aa4.71□□□□□ -1.66
RNF4-220ENST00000513578 Q8N1X5 172 aa4.71□□□□□ -1.66
RNF4-220ENST00000513578 RPS28P62857 69 aaKnown RBP4.7□□□□□ -1.66
RNF4-220ENST00000513578 FAM236DA0A1B0GTK5 79 aa4.69□□□□□ -1.66
RNF4-220ENST00000513578 FAM236CP0DP71 79 aa4.69□□□□□ -1.66
RNF4-220ENST00000513578 KRTAP13-3Q3SY46 172 aa4.69□□□□□ -1.66
RNF4-220ENST00000513578 LINC00208Q96KT6 92 aa4.69□□□□□ -1.66
RNF4-220ENST00000513578 NDUFS5O43920 106 aa4.68□□□□□ -1.66
RNF4-220ENST00000513578 C1orf64Q8NEQ6 169 aa4.67□□□□□ -1.66
RNF4-220ENST00000513578 SPANXA2-OT1Q8N9U9 137 aa4.66□□□□□ -1.66
RNF4-220ENST00000513578 FLG2Q5D862 2391 aaPredicted RBP4.66□□□□□ -1.66
RNF4-220ENST00000513578 TNXBP22105 4242 aa4.66□□□□□ -1.66
RNF4-220ENST00000513578 RNF213Q63HN8 5207 aa4.66□□□□□ -1.66
RNF4-220ENST00000513578 FAT3Q8TDW7 4589 aa4.66□□□□□ -1.66
RNF4-220ENST00000513578 LOC101927531A0A1B0GV80 90 aa4.65□□□□□ -1.67
RNF4-220ENST00000513578 Q5W150 140 aa4.64□□□□□ -1.67
RNF4-220ENST00000513578 CYP4F30PQ9H0H9 118 aa4.64□□□□□ -1.67
RNF4-220ENST00000513578 FP248Q71RG6 208 aaPredicted RBP4.63□□□□□ -1.67
RNF4-220ENST00000513578 SERP1Q9Y6X1 66 aa4.63□□□□□ -1.67
RNF4-220ENST00000513578 OXTP01178 125 aa4.62□□□□□ -1.67
RNF4-220ENST00000513578 KRTAP4-8A0A0G2JLE6 195 aa4.61□□□□□ -1.67
RNF4-220ENST00000513578 A8MUU9 505 aa4.61□□□□□ -1.67
RNF4-220ENST00000513578 MT1HL1P0DM35 61 aa4.61□□□□□ -1.67
RNF4-220ENST00000513578 C20orf166-AS1Q96NR2 134 aa4.61□□□□□ -1.67
RNF4-220ENST00000513578 LRP1Q07954 4544 aaKnown RBP4.59□□□□□ -1.67
RNF4-220ENST00000513578 IGLV7-46A0A075B6I9 117 aa4.59□□□□□ -1.67
RNF4-220ENST00000513578 IGKV2-30P06310 120 aa4.59□□□□□ -1.67
RNF4-220ENST00000513578 HMCN2Q8NDA2 5059 aa4.59□□□□□ -1.67
RNF4-220ENST00000513578 MYCBP2O75592 4640 aa4.57□□□□□ -1.68
RNF4-220ENST00000513578 RETNLBQ9BQ08 111 aa4.56□□□□□ -1.68
RNF4-220ENST00000513578 Q75L30 129 aa4.55□□□□□ -1.68
RNF4-220ENST00000513578 C9orf92A6NGG3 77 aa4.54□□□□□ -1.68
RNF4-220ENST00000513578 PCOTHQ58A44 107 aa4.54□□□□□ -1.68
RNF4-220ENST00000513578 FAT4Q6V0I7 4981 aa4.54□□□□□ -1.68
RNF4-220ENST00000513578 SMIM26A0A096LP01 95 aa4.53□□□□□ -1.68
RNF4-220ENST00000513578 FSIP2Q5CZC0 6907 aa4.53□□□□□ -1.68
RNF4-220ENST00000513578 HRES1P13985 223 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms