RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 LYNX1G3V0Z9 82 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 APELAP0DMC3 54 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 LYNX1P0DP58 116 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 SNURFQ9Y675 71 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 C2CD3Q4AC94 2353 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 A0A087WTM6 91 aa1.8□□□□□ -2.12
NUP54-209ENST00000510569 A0A096LNT2 108 aa1.8□□□□□ -2.12
NUP54-209ENST00000510569 NDUFA4O00483 81 aa1.8□□□□□ -2.12
NUP54-209ENST00000510569 PRB3Q04118 309 aaPredicted RBP1.8□□□□□ -2.12
NUP54-209ENST00000510569 WFDC10AQ9H1F0 79 aa1.8□□□□□ -2.12
NUP54-209ENST00000510569 DNAH1Q9P2D7 4330 aa1.8□□□□□ -2.12
NUP54-209ENST00000510569 CMYA5Q8N3K9 4069 aa1.8□□□□□ -2.12
NUP54-209ENST00000510569 TRAV21A0A0B4J279 112 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 G3V318 75 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 NDUFB1O75438 58 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 IGLV6-57P01721 117 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 COX17Q14061 63 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 RPL39LQ96EH5 51 aaKnown RBP1.79□□□□□ -2.12
NUP54-209ENST00000510569 USMG5Q96IX5 58 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 SPRR4Q96PI1 79 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 TLN2Q9Y4G6 2542 aa1.79□□□□□ -2.12
NUP54-209ENST00000510569 JMJD1CQ15652 2540 aa1.78□□□□□ -2.12
NUP54-209ENST00000510569 LOC110117498A0A087WWA1 95 aa1.78□□□□□ -2.12
NUP54-209ENST00000510569 IGKV2-29A2NJV5 120 aaPredicted RBP1.78□□□□□ -2.12
NUP54-209ENST00000510569 H0Y9P7 68 aa1.78□□□□□ -2.12
NUP54-209ENST00000510569 M0QY20 66 aa1.78□□□□□ -2.12
NUP54-209ENST00000510569 INE1O15225 51 aa1.78□□□□□ -2.12
NUP54-209ENST00000510569 TMEM263Q8WUH6 116 aaKnown RBP1.78□□□□□ -2.12
NUP54-209ENST00000510569 CCDC168Q8NDH2 2452 aa1.78□□□□□ -2.12
NUP54-209ENST00000510569 MTORP42345 2549 aa1.77□□□□□ -2.13
NUP54-209ENST00000510569 TRBV30A0A0K0K1B3 111 aa1.77□□□□□ -2.13
NUP54-209ENST00000510569 NBEAL1Q6ZS30 2694 aa1.77□□□□□ -2.13
NUP54-209ENST00000510569 MEGF8Q7Z7M0 2845 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 CUBNO60494 3623 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 VWFP04275 2813 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 LCE6AA0A183 80 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 M0R2N4 97 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 DEFB1P60022 68 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 RPL39P62891 51 aaKnown RBP1.76□□□□□ -2.13
NUP54-209ENST00000510569 SMR3AQ99954 134 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 ANK2Q01484 3957 aa1.76□□□□□ -2.13
NUP54-209ENST00000510569 DYNC2H1Q8NCM8 4307 aaKnown RBP1.76□□□□□ -2.13
NUP54-209ENST00000510569 FN1P02751 2386 aaKnown RBP1.76□□□□□ -2.13
NUP54-209ENST00000510569 ACANP16112 2415 aa1.75□□□□□ -2.13
NUP54-209ENST00000510569 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.75□□□□□ -2.13
NUP54-209ENST00000510569 TRGV4A0A0C4DH28 118 aa1.75□□□□□ -2.13
NUP54-209ENST00000510569 NREPQ16612 68 aa1.75□□□□□ -2.13
NUP54-209ENST00000510569 SPATA8Q6RVD6 105 aa1.75□□□□□ -2.13
NUP54-209ENST00000510569 ZNF625Q96I27 306 aaPredicted RBP1.75□□□□□ -2.13
NUP54-209ENST00000510569 LINC00208Q96KT6 92 aa1.75□□□□□ -2.13
NUP54-209ENST00000510569 RHPN1-AS1Q9BWJ2 59 aa1.75□□□□□ -2.13
NUP54-209ENST00000510569 I3L3M4 83 aa1.74□□□□□ -2.13
NUP54-209ENST00000510569 NDUFA1O15239 70 aa1.74□□□□□ -2.13
NUP54-209ENST00000510569 OBSCN-AS1Q96MR7 158 aa1.74□□□□□ -2.13
NUP54-209ENST00000510569 Q96NJ1 140 aa1.74□□□□□ -2.13
NUP54-209ENST00000510569 TIMM8BQ9Y5J9 83 aaPredicted RBP1.74□□□□□ -2.13
NUP54-209ENST00000510569 COL6A5A8TX70 2615 aa1.74□□□□□ -2.13
NUP54-209ENST00000510569 SONP18583 2426 aaKnown RBP1.74□□□□□ -2.13
NUP54-209ENST00000510569 H3BUX3 64 aa1.73□□□□□ -2.13
NUP54-209ENST00000510569 SPINK7P58062 85 aa1.73□□□□□ -2.13
NUP54-209ENST00000510569 WNK1Q9H4A3 2382 aa1.73□□□□□ -2.13
NUP54-209ENST00000510569 PKD1L1Q8TDX9 2849 aa1.73□□□□□ -2.13
NUP54-209ENST00000510569 TRRAPQ9Y4A5 3859 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 STAB1Q9NY15 2570 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 C10orf99Q6UWK7 81 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 COA5Q86WW8 74 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 LINC00472Q9H8W2 130 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 ATRQ13535 2644 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 NBEAL2Q6ZNJ1 2754 aa1.72□□□□□ -2.13
NUP54-209ENST00000510569 TRGV2A0A075B6R0 118 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 TRGV1A0A0A0MS02 117 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 SPINK13Q1W4C9 94 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 DEFB112Q30KQ8 113 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 LINC00308Q8TCZ7 52 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 CCL19Q99731 98 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 CDKN2A-AS1Q9UH64 79 aa1.71□□□□□ -2.14
NUP54-209ENST00000510569 DNAH10Q8IVF4 4471 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 HUWE1Q7Z6Z7 4374 aaKnown RBP1.7□□□□□ -2.14
NUP54-209ENST00000510569 ACYP2P14621 99 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 COX6A2Q02221 97 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 DEFB114Q30KQ6 69 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 WFDC9Q8NEX5 89 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 UBL5Q9BZL1 73 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 TGP01266 2768 aa1.7□□□□□ -2.14
NUP54-209ENST00000510569 VPS13DQ5THJ4 4388 aa1.69□□□□□ -2.14
NUP54-209ENST00000510569 DNAH9Q9NYC9 4486 aa1.69□□□□□ -2.14
NUP54-209ENST00000510569 DEFB131AP59861 70 aa1.69□□□□□ -2.14
NUP54-209ENST00000510569 Q6ZQY7 126 aa1.69□□□□□ -2.14
NUP54-209ENST00000510569 DNAH17Q9UFH2 4485 aa1.69□□□□□ -2.14
NUP54-209ENST00000510569 PLECQ15149 4684 aaKnown RBP1.68□□□□□ -2.14
NUP54-209ENST00000510569 ENHOQ6UWT2 76 aa1.68□□□□□ -2.14
NUP54-209ENST00000510569 Q6ZRN7 208 aaPredicted RBP1.68□□□□□ -2.14
NUP54-209ENST00000510569 LYSTQ99698 3801 aa1.68□□□□□ -2.14
NUP54-209ENST00000510569 DEFB104AQ8WTQ1 72 aa1.67□□□□□ -2.14
NUP54-209ENST00000510569 DNAH2Q9P225 4427 aa1.67□□□□□ -2.14
NUP54-209ENST00000510569 DNAH7Q8WXX0 4024 aa1.67□□□□□ -2.14
NUP54-209ENST00000510569 HECTD4Q9Y4D8 3996 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 DNAH6Q9C0G6 4158 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 TENM3Q9P273 2699 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 MGAM2Q2M2H8 2515 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms