RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 C14orf132Q9NPU4 83 aa8.65□□□□□ -1.02
VIM-208ENST00000497849 DSCR8Q96T75 97 aa8.64□□□□□ -1.03
VIM-208ENST00000497849 LOC110117498A0A087WWA1 95 aa8.61□□□□□ -1.03
VIM-208ENST00000497849 J3QR89 54 aa8.61□□□□□ -1.03
VIM-208ENST00000497849 PDE6GP18545 87 aa8.61□□□□□ -1.03
VIM-208ENST00000497849 TRBV7-4A0A0J9YYF1 115 aa8.6□□□□□ -1.03
VIM-208ENST00000497849 C21orf62-AS1Q17RA5 79 aa8.59□□□□□ -1.03
VIM-208ENST00000497849 Q6JHZ5 121 aa8.59□□□□□ -1.03
VIM-208ENST00000497849 IGFL1Q6UW32 110 aa8.59□□□□□ -1.03
VIM-208ENST00000497849 Q6ZQT0 140 aa8.59□□□□□ -1.03
VIM-208ENST00000497849 K7ERU9 68 aa8.58□□□□□ -1.04
VIM-208ENST00000497849 CCKP06307 115 aa8.58□□□□□ -1.04
VIM-208ENST00000497849 Q6Q795 121 aa8.58□□□□□ -1.04
VIM-208ENST00000497849 LCE2BO14633 110 aa8.55□□□□□ -1.04
VIM-208ENST00000497849 VPS25Q9BRG1 176 aa8.55□□□□□ -1.04
VIM-208ENST00000497849 C1orf195Q5TG92 126 aa8.54□□□□□ -1.04
VIM-208ENST00000497849 FAM240AA0A1B0GVK7 77 aa8.52□□□□□ -1.05
VIM-208ENST00000497849 ACYP1P07311 99 aa8.52□□□□□ -1.05
VIM-208ENST00000497849 CD164Q04900 197 aa8.52□□□□□ -1.05
VIM-208ENST00000497849 A0A1W2PNM2 257 aa8.51□□□□□ -1.05
VIM-208ENST00000497849 Q5XG85 94 aa8.5□□□□□ -1.05
VIM-208ENST00000497849 TRBV7-7A0A0K0K1E9 115 aa8.48□□□□□ -1.05
VIM-208ENST00000497849 A0A1B0GW54 56 aa8.48□□□□□ -1.05
VIM-208ENST00000497849 MT2AP02795 61 aa8.48□□□□□ -1.05
VIM-208ENST00000497849 LINC00846Q9NV44 126 aa8.45□□□□□ -1.06
VIM-208ENST00000497849 MT1FP04733 61 aa8.43□□□□□ -1.06
VIM-208ENST00000497849 KRTAP9-3Q9BYQ3 159 aa8.43□□□□□ -1.06
VIM-208ENST00000497849 A0A087WSZ3 146 aa8.42□□□□□ -1.06
VIM-208ENST00000497849 UBL5Q9BZL1 73 aa8.41□□□□□ -1.06
VIM-208ENST00000497849 NREPQ16612 68 aa8.39□□□□□ -1.07
VIM-208ENST00000497849 Q6ZVQ6 151 aa8.38□□□□□ -1.07
VIM-208ENST00000497849 ATP11AUNQ6ZP68 121 aa8.37□□□□□ -1.07
VIM-208ENST00000497849 SS18L2Q9UHA2 77 aa8.37□□□□□ -1.07
VIM-208ENST00000497849 KRTAP6-3Q3LI67 103 aa8.35□□□□□ -1.07
VIM-208ENST00000497849 LINC00643Q86TS7 51 aa8.35□□□□□ -1.07
VIM-208ENST00000497849 Q75L30 129 aa8.34□□□□□ -1.07
VIM-208ENST00000497849 KRTAP19-6Q3LI70 58 aa8.33□□□□□ -1.08
VIM-208ENST00000497849 KRTAP10-10P60014 251 aa8.31□□□□□ -1.08
VIM-208ENST00000497849 DEFB116Q30KQ4 102 aa8.31□□□□□ -1.08
VIM-208ENST00000497849 Q96NJ1 140 aa8.31□□□□□ -1.08
VIM-208ENST00000497849 ATP5EP2Q5VTU8 51 aa8.3□□□□□ -1.08
VIM-208ENST00000497849 BPY2O14599 106 aa8.29□□□□□ -1.08
VIM-208ENST00000497849 IGKV3D-7A0A0C4DH55 119 aa8.28□□□□□ -1.08
VIM-208ENST00000497849 LINC00472Q9H8W2 130 aa8.28□□□□□ -1.08
VIM-208ENST00000497849 CXCL6P80162 114 aa8.27□□□□□ -1.09
VIM-208ENST00000497849 SIGMAR1Q99720 223 aa8.27□□□□□ -1.09
VIM-208ENST00000497849 J3KT08 172 aa8.25□□□□□ -1.09
VIM-208ENST00000497849 MT-ATP8P03928 68 aa8.25□□□□□ -1.09
VIM-208ENST00000497849 IGKV4-1P06312 121 aa8.24□□□□□ -1.09
VIM-208ENST00000497849 NEBP20929 6669 aa8.22□□□□□ -1.09
VIM-208ENST00000497849 DSCR10P59022 87 aa8.21□□□□□ -1.1
VIM-208ENST00000497849 IMUPQ9GZP8 106 aa8.19□□□□□ -1.1
VIM-208ENST00000497849 A8MWP4 228 aa8.18□□□□□ -1.1
VIM-208ENST00000497849 NDUFB1O75438 58 aa8.18□□□□□ -1.1
VIM-208ENST00000497849 HIST1H4AP62805 103 aaKnown RBP8.18□□□□□ -1.1
VIM-208ENST00000497849 Q8N9L7 120 aa8.17□□□□□ -1.1
VIM-208ENST00000497849 C20orf166-AS1Q96NR2 134 aa8.16□□□□□ -1.1
VIM-208ENST00000497849 K7EQZ3 153 aa8.15□□□□□ -1.1
VIM-208ENST00000497849 NOTCH2NLQ7Z3S9 236 aa8.15□□□□□ -1.1
VIM-208ENST00000497849 PRR15Q8IV56 129 aa8.14□□□□□ -1.11
VIM-208ENST00000497849 IGHV6-1A0A0B4J1U7 121 aa8.13□□□□□ -1.11
VIM-208ENST00000497849 A8MUU9 505 aa8.13□□□□□ -1.11
VIM-208ENST00000497849 FAM236DA0A1B0GTK5 79 aa8.12□□□□□ -1.11
VIM-208ENST00000497849 A0A1B0GVX0 72 aa8.12□□□□□ -1.11
VIM-208ENST00000497849 FAM236CP0DP71 79 aa8.12□□□□□ -1.11
VIM-208ENST00000497849 A0A087WVE0 104 aa8.11□□□□□ -1.11
VIM-208ENST00000497849 MUC12Q9UKN1 5478 aa8.1□□□□□ -1.11
VIM-208ENST00000497849 LINC00313P59037 77 aa8.09□□□□□ -1.11
VIM-208ENST00000497849 KRTAP16-1A8MUX0 517 aa8.08□□□□□ -1.12
VIM-208ENST00000497849 MPLKIPQ8TAP9 179 aa8.08□□□□□ -1.12
VIM-208ENST00000497849 HCG22E2RYF7 251 aa8.06□□□□□ -1.12
VIM-208ENST00000497849 C8orf87E5RJ46 101 aa8.06□□□□□ -1.12
VIM-208ENST00000497849 C8orf17Q9NRJ1 99 aa8.06□□□□□ -1.12
VIM-208ENST00000497849 MMP24-AS1A0A0U1RRL7 71 aa8.04□□□□□ -1.12
VIM-208ENST00000497849 HRES1P13985 223 aa8.04□□□□□ -1.12
VIM-208ENST00000497849 FAM236AA0A1B0GUQ0 79 aa8.03□□□□□ -1.12
VIM-208ENST00000497849 FAM236BA0A1B0GV22 79 aa8.03□□□□□ -1.12
VIM-208ENST00000497849 KRTAP20-1Q3LI63 56 aa8.03□□□□□ -1.12
VIM-208ENST00000497849 WFDC13Q8IUB5 93 aa8.03□□□□□ -1.12
VIM-208ENST00000497849 CASC2Q6XLA1 102 aa8.02□□□□□ -1.13
VIM-208ENST00000497849 hDV103S1A0JD37 113 aa8.01□□□□□ -1.13
VIM-208ENST00000497849 SCGB1A1P11684 91 aa8.01□□□□□ -1.13
VIM-208ENST00000497849 RBM12B-AS1Q9P1G2 102 aa8.01□□□□□ -1.13
VIM-208ENST00000497849 TMEM254Q8TBM7 123 aa7.98□□□□□ -1.13
VIM-208ENST00000497849 MRPL34Q9BQ48 92 aaKnown RBP7.96□□□□□ -1.14
VIM-208ENST00000497849 ATOX1O00244 68 aa7.95□□□□□ -1.14
VIM-208ENST00000497849 SMIM20Q8N5G0 67 aa7.91□□□□□ -1.14
VIM-208ENST00000497849 Q8N9P0 234 aaPredicted RBP7.91□□□□□ -1.14
VIM-208ENST00000497849 NDUFS5O43920 106 aa7.9□□□□□ -1.14
VIM-208ENST00000497849 OCR1Q9BZK8 76 aa7.87□□□□□ -1.15
VIM-208ENST00000497849 TRAV7A0A075B6U4 112 aa7.86□□□□□ -1.15
VIM-208ENST00000497849 ANAPC13Q9BS18 74 aa7.86□□□□□ -1.15
VIM-208ENST00000497849 TP53AIP1Q9HCN2 124 aa7.86□□□□□ -1.15
VIM-208ENST00000497849 UQCRQO14949 82 aa7.84□□□□□ -1.15
VIM-208ENST00000497849 SERP2Q8N6R1 65 aa7.83□□□□□ -1.16
VIM-208ENST00000497849 ZCCHC13Q8WW36 166 aaKnown RBP7.82□□□□□ -1.16
VIM-208ENST00000497849 COX7CP15954 63 aa7.77□□□□□ -1.17
VIM-208ENST00000497849 C5orf47Q569G3 176 aa7.77□□□□□ -1.17
VIM-208ENST00000497849 TRAV22A0A0B4J277 110 aa7.76□□□□□ -1.17
VIM-208ENST00000497849 Q5W150 140 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 306.5 ms