RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CCL3L1P16619 93 aa2.31□□□□□ -2.04
SF3B1-212ENST00000496458 RPL39P62891 51 aaKnown RBP2.31□□□□□ -2.04
SF3B1-212ENST00000496458 HAMPP81172 84 aa2.31□□□□□ -2.04
SF3B1-212ENST00000496458 SMIM11BQ8TCY0 68 aa2.31□□□□□ -2.04
SF3B1-212ENST00000496458 PRR15LQ9BU68 103 aa2.31□□□□□ -2.04
SF3B1-212ENST00000496458 ANK2Q01484 3957 aa2.31□□□□□ -2.04
SF3B1-212ENST00000496458 I3L2K1 104 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 DEFB112Q30KQ8 113 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 Q8TAT8 98 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 PLAC8Q9NZF1 115 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 KLK9Q9UKQ9 250 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 LINC01558Q9Y6Z2 57 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 NBEAL2Q6ZNJ1 2754 aa2.3□□□□□ -2.04
SF3B1-212ENST00000496458 MGPP08493 103 aa2.29□□□□□ -2.04
SF3B1-212ENST00000496458 CNBPP62633 177 aaKnown RBP2.29□□□□□ -2.04
SF3B1-212ENST00000496458 KRTAP26-1Q6PEX3 210 aa2.29□□□□□ -2.04
SF3B1-212ENST00000496458 LEAP2Q969E1 77 aa2.29□□□□□ -2.04
SF3B1-212ENST00000496458 LINC00208Q96KT6 92 aa2.29□□□□□ -2.04
SF3B1-212ENST00000496458 MEGF8Q7Z7M0 2845 aa2.29□□□□□ -2.04
SF3B1-212ENST00000496458 H3BUX3 64 aa2.28□□□□□ -2.04
SF3B1-212ENST00000496458 KRTAP21-3Q3LHN1 58 aa2.28□□□□□ -2.04
SF3B1-212ENST00000496458 CMYA5Q8N3K9 4069 aa2.28□□□□□ -2.04
SF3B1-212ENST00000496458 STAB2Q8WWQ8 2551 aa2.27□□□□□ -2.05
SF3B1-212ENST00000496458 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.27□□□□□ -2.05
SF3B1-212ENST00000496458 ETDCA0A1B0GVM5 59 aa2.27□□□□□ -2.05
SF3B1-212ENST00000496458 K7EIM0 57 aa2.27□□□□□ -2.05
SF3B1-212ENST00000496458 M0QY20 66 aa2.27□□□□□ -2.05
SF3B1-212ENST00000496458 MIR22HGQ0VDD5 57 aa2.27□□□□□ -2.05
SF3B1-212ENST00000496458 TRGV2A0A075B6R0 118 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 TRBV6-4A0A1B0GX49 114 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 TPRXLQ17RH7 258 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 C10orf55Q5SWW7 151 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 MINOS1Q5TGZ0 78 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 KCNQ1DNQ9H478 68 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 TENM3Q9P273 2699 aa2.26□□□□□ -2.05
SF3B1-212ENST00000496458 A0A0G2JQZ4 141 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 CLPSL1A2RUU4 121 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 NDUFA4O00483 81 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 PRB4P10163 310 aaPredicted RBP2.25□□□□□ -2.05
SF3B1-212ENST00000496458 RNASE3P12724 160 aaKnown RBP2.25□□□□□ -2.05
SF3B1-212ENST00000496458 COX7BP24311 80 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 COX7B2Q8TF08 81 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 WFDC10AQ9H1F0 79 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 CDKN2A-AS1Q9UH64 79 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 TENM2Q9NT68 2774 aa2.25□□□□□ -2.05
SF3B1-212ENST00000496458 COL7A1Q02388 2944 aa2.24□□□□□ -2.05
SF3B1-212ENST00000496458 CCL18P55774 89 aa2.24□□□□□ -2.05
SF3B1-212ENST00000496458 KLK9Q2XQG4 91 aa2.24□□□□□ -2.05
SF3B1-212ENST00000496458 C1orf137Q5JT78 98 aa2.24□□□□□ -2.05
SF3B1-212ENST00000496458 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.24□□□□□ -2.05
SF3B1-212ENST00000496458 LINC00575Q6W349 94 aa2.24□□□□□ -2.05
SF3B1-212ENST00000496458 C10orf99Q6UWK7 81 aa2.23□□□□□ -2.05
SF3B1-212ENST00000496458 C5orf56Q8N8D9 126 aa2.23□□□□□ -2.05
SF3B1-212ENST00000496458 SPACA4Q8TDM5 124 aa2.23□□□□□ -2.05
SF3B1-212ENST00000496458 G3V318 75 aa2.22□□□□□ -2.05
SF3B1-212ENST00000496458 M0R2N4 97 aa2.22□□□□□ -2.05
SF3B1-212ENST00000496458 SPAG11BQ08648 103 aa2.22□□□□□ -2.05
SF3B1-212ENST00000496458 SPAG11AQ6PDA7 123 aa2.22□□□□□ -2.05
SF3B1-212ENST00000496458 PRKDCP78527 4128 aaKnown RBP2.22□□□□□ -2.05
SF3B1-212ENST00000496458 H0Y9P7 68 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 APELAP0DMC3 54 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 SPINK7P58062 85 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 LINC00158P58513 81 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 COX6A2Q02221 97 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 COA5Q86WW8 74 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 C4orf3Q8WVX3 66 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 CRCT1Q9UGL9 99 aa2.21□□□□□ -2.06
SF3B1-212ENST00000496458 DNAH3Q8TD57 4116 aa2.2□□□□□ -2.06
SF3B1-212ENST00000496458 CSAG1Q6PB30 78 aa2.2□□□□□ -2.06
SF3B1-212ENST00000496458 SPATA8Q6RVD6 105 aa2.2□□□□□ -2.06
SF3B1-212ENST00000496458 TRGV4A0A0C4DH28 118 aa2.19□□□□□ -2.06
SF3B1-212ENST00000496458 COX17Q14061 63 aa2.19□□□□□ -2.06
SF3B1-212ENST00000496458 DEFB136Q30KP8 78 aa2.19□□□□□ -2.06
SF3B1-212ENST00000496458 LINC00959A0A1B0GUT2 108 aa2.17□□□□□ -2.06
SF3B1-212ENST00000496458 H3BUA1 57 aa2.17□□□□□ -2.06
SF3B1-212ENST00000496458 Q6ZQY7 126 aa2.17□□□□□ -2.06
SF3B1-212ENST00000496458 USMG5Q96IX5 58 aa2.17□□□□□ -2.06
SF3B1-212ENST00000496458 SPRR4Q96PI1 79 aa2.17□□□□□ -2.06
SF3B1-212ENST00000496458 DNAH9Q9NYC9 4486 aa2.17□□□□□ -2.06
SF3B1-212ENST00000496458 DEFB131BA0A096LNP1 70 aa2.16□□□□□ -2.06
SF3B1-212ENST00000496458 UQCR11O14957 56 aa2.16□□□□□ -2.06
SF3B1-212ENST00000496458 IGLV5-48A0A075B6I7 105 aa2.15□□□□□ -2.07
SF3B1-212ENST00000496458 Q8IZM0 81 aa2.15□□□□□ -2.07
SF3B1-212ENST00000496458 DEFB104AQ8WTQ1 72 aa2.15□□□□□ -2.07
SF3B1-212ENST00000496458 K7EIL1 84 aa2.13□□□□□ -2.07
SF3B1-212ENST00000496458 DMAC1Q96GE9 116 aa2.13□□□□□ -2.07
SF3B1-212ENST00000496458 TOMM7Q9P0U1 55 aa2.13□□□□□ -2.07
SF3B1-212ENST00000496458 HUWE1Q7Z6Z7 4374 aaKnown RBP2.13□□□□□ -2.07
SF3B1-212ENST00000496458 IGKV3-7A0A075B6H7 116 aa2.12□□□□□ -2.07
SF3B1-212ENST00000496458 NUPR2A6NF83 97 aa2.12□□□□□ -2.07
SF3B1-212ENST00000496458 RHPN1-AS1Q9BWJ2 59 aa2.12□□□□□ -2.07
SF3B1-212ENST00000496458 DNAH7Q8WXX0 4024 aa2.12□□□□□ -2.07
SF3B1-212ENST00000496458 A8MTW9 85 aa2.11□□□□□ -2.07
SF3B1-212ENST00000496458 K7EQZ3 153 aa2.11□□□□□ -2.07
SF3B1-212ENST00000496458 TP53AIP1Q9HCN2 124 aa2.11□□□□□ -2.07
SF3B1-212ENST00000496458 CSMD3Q7Z407 3707 aa2.11□□□□□ -2.07
SF3B1-212ENST00000496458 A0A1B0GU69 56 aa2.09□□□□□ -2.07
SF3B1-212ENST00000496458 DEFB131AP59861 70 aa2.09□□□□□ -2.07
SF3B1-212ENST00000496458 GVQW2A0A096LPI5 108 aaPredicted RBP2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms