RNA–Protein interactions for RNA: ENST00000496296.5

FGFR1-223, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,898 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-223	ENST00000496296	SSBP3-AS1	Q7Z2R9	100 aa		12.46	□□□□□ -0.42
FGFR1-223	ENST00000496296	FP248	Q71RG6	208 aa	Predicted RBP	12.45	□□□□□ -0.42
FGFR1-223	ENST00000496296	HERC2	O95714	4834 aa		12.44	□□□□□ -0.42
FGFR1-223	ENST00000496296	CD164	Q04900	197 aa		12.44	□□□□□ -0.42
FGFR1-223	ENST00000496296	RYR1	P21817	5038 aa		12.43	□□□□□ -0.42
FGFR1-223	ENST00000496296	HRCT1	Q6UXD1	115 aa		12.42	□□□□□ -0.42
FGFR1-223	ENST00000496296	HSPG2	P98160	4391 aa		12.42	□□□□□ -0.42
FGFR1-223	ENST00000496296		H3BPC8	53 aa		12.42	□□□□□ -0.42
FGFR1-223	ENST00000496296	CDK2AP2	O75956	126 aa		12.42	□□□□□ -0.42
FGFR1-223	ENST00000496296	KRTAP1-4	P0C5Y4	121 aa		12.42	□□□□□ -0.42
FGFR1-223	ENST00000496296	MP68	P56378	58 aa		12.42	□□□□□ -0.42
FGFR1-223	ENST00000496296		A0A087X002	238 aa		12.4	□□□□□ -0.42
FGFR1-223	ENST00000496296	PLA2G1B	P04054	148 aa	Known RBP	12.4	□□□□□ -0.42
FGFR1-223	ENST00000496296	FAM229A	H3BQW9	127 aa		12.38	□□□□□ -0.43
FGFR1-223	ENST00000496296	hDV103S1	A0JD37	113 aa		12.38	□□□□□ -0.43
FGFR1-223	ENST00000496296		A0A1B0GVX0	72 aa		12.37	□□□□□ -0.43
FGFR1-223	ENST00000496296	KRTAP10-4	P60372	401 aa	Predicted RBP	12.37	□□□□□ -0.43
FGFR1-223	ENST00000496296	CYP4F30P	Q9H0H9	118 aa		12.37	□□□□□ -0.43
FGFR1-223	ENST00000496296	KRTAP13-2	Q52LG2	175 aa		12.36	□□□□□ -0.43
FGFR1-223	ENST00000496296	KRTAP17-1	Q9BYP8	105 aa		12.36	□□□□□ -0.43
FGFR1-223	ENST00000496296	C8orf17	Q9NRJ1	99 aa		12.36	□□□□□ -0.43
FGFR1-223	ENST00000496296	VPS13B	Q7Z7G8	4022 aa		12.35	□□□□□ -0.43
FGFR1-223	ENST00000496296	TRAV22	A0A0B4J277	110 aa		12.34	□□□□□ -0.43
FGFR1-223	ENST00000496296		H0Y9P7	68 aa		12.32	□□□□□ -0.44
FGFR1-223	ENST00000496296	TP53AIP1	Q9HCN2	124 aa		12.31	□□□□□ -0.44
FGFR1-223	ENST00000496296	FAT1	Q14517	4588 aa		12.3	□□□□□ -0.44
FGFR1-223	ENST00000496296	TYMSOS	Q8TAI1	123 aa		12.29	□□□□□ -0.44
FGFR1-223	ENST00000496296	LINC00208	Q96KT6	92 aa		12.29	□□□□□ -0.44
FGFR1-223	ENST00000496296	C1orf64	Q8NEQ6	169 aa		12.27	□□□□□ -0.44
FGFR1-223	ENST00000496296	SPANXA2-OT1	Q8N9U9	137 aa		12.27	□□□□□ -0.45
FGFR1-223	ENST00000496296	KRTAP4-5	Q9BYR2	181 aa		12.27	□□□□□ -0.45
FGFR1-223	ENST00000496296	IGHV6-1	A0A0B4J1U7	121 aa		12.25	□□□□□ -0.45
FGFR1-223	ENST00000496296		Q5VSD8	79 aa		12.25	□□□□□ -0.45
FGFR1-223	ENST00000496296	PCLO	Q9Y6V0	5065 aa		12.24	□□□□□ -0.45
FGFR1-223	ENST00000496296	C4orf48	Q5BLP8	95 aa		12.23	□□□□□ -0.45
FGFR1-223	ENST00000496296	PRR26	Q8N8Z3	221 aa		12.23	□□□□□ -0.45
FGFR1-223	ENST00000496296	MRPL34	Q9BQ48	92 aa	Known RBP	12.22	□□□□□ -0.45
FGFR1-223	ENST00000496296		Q8N1X5	172 aa		12.21	□□□□□ -0.46
FGFR1-223	ENST00000496296	LIMD2	Q9BT23	127 aa		12.18	□□□□□ -0.46
FGFR1-223	ENST00000496296	ABCA13	Q86UQ4	5058 aa		12.17	□□□□□ -0.46
FGFR1-223	ENST00000496296	C8orf87	E5RJ46	101 aa		12.17	□□□□□ -0.46
FGFR1-223	ENST00000496296	NOTCH2NL	Q7Z3S9	236 aa		12.17	□□□□□ -0.46
FGFR1-223	ENST00000496296	MPLKIP	Q8TAP9	179 aa		12.17	□□□□□ -0.46
FGFR1-223	ENST00000496296	SPINK1	P00995	79 aa		12.16	□□□□□ -0.46
FGFR1-223	ENST00000496296		Q1T7F1	81 aa		12.15	□□□□□ -0.46
FGFR1-223	ENST00000496296	SPAG11A	Q6PDA7	123 aa		12.14	□□□□□ -0.47
FGFR1-223	ENST00000496296	LINC00304	Q8N9R0	145 aa		12.14	□□□□□ -0.47
FGFR1-223	ENST00000496296	PRR4	Q16378	134 aa		12.12	□□□□□ -0.47
FGFR1-223	ENST00000496296	PRO0628	Q9UI54	55 aa		12.11	□□□□□ -0.47
FGFR1-223	ENST00000496296	C1orf195	Q5TG92	126 aa		12.08	□□□□□ -0.48
FGFR1-223	ENST00000496296	RPS29	P62273	56 aa	Known RBP	12.08	□□□□□ -0.48
FGFR1-223	ENST00000496296	NDUFS5	O43920	106 aa		12.07	□□□□□ -0.48
FGFR1-223	ENST00000496296	IGLV7-46	A0A075B6I9	117 aa		12.06	□□□□□ -0.48
FGFR1-223	ENST00000496296	KRTAP13-3	Q3SY46	172 aa		12.04	□□□□□ -0.48
FGFR1-223	ENST00000496296		V9GYY9	64 aa		12.03	□□□□□ -0.48
FGFR1-223	ENST00000496296	LINC00313	P59037	77 aa		12	□□□□□ -0.49
FGFR1-223	ENST00000496296	LOC101927531	A0A1B0GV80	90 aa		11.97	□□□□□ -0.49
FGFR1-223	ENST00000496296		Q8N9P0	234 aa	Predicted RBP	11.97	□□□□□ -0.49
FGFR1-223	ENST00000496296	PKHD1L1	Q86WI1	4243 aa		11.97	□□□□□ -0.49
FGFR1-223	ENST00000496296		Q5W150	140 aa		11.95	□□□□□ -0.5
FGFR1-223	ENST00000496296	BRK1	Q8WUW1	75 aa		11.94	□□□□□ -0.5
FGFR1-223	ENST00000496296	KRTAP16-1	A8MUX0	517 aa		11.92	□□□□□ -0.5
FGFR1-223	ENST00000496296	KRTAP10-8	P60410	259 aa		11.92	□□□□□ -0.5
FGFR1-223	ENST00000496296	FLG2	Q5D862	2391 aa	Predicted RBP	11.92	□□□□□ -0.5
FGFR1-223	ENST00000496296	PCOTH	Q58A44	107 aa		11.91	□□□□□ -0.5
FGFR1-223	ENST00000496296	COA5	Q86WW8	74 aa		11.89	□□□□□ -0.51
FGFR1-223	ENST00000496296	MYCBP2	O75592	4640 aa		11.89	□□□□□ -0.51
FGFR1-223	ENST00000496296	PSPHP1	O15172	72 aa		11.84	□□□□□ -0.51
FGFR1-223	ENST00000496296	LRP1	Q07954	4544 aa	Known RBP	11.81	□□□□□ -0.52
FGFR1-223	ENST00000496296		A8MUN3	132 aa		11.8	□□□□□ -0.52
FGFR1-223	ENST00000496296	FAT3	Q8TDW7	4589 aa		11.78	□□□□□ -0.52
FGFR1-223	ENST00000496296		Q5VV11	94 aa		11.78	□□□□□ -0.52
FGFR1-223	ENST00000496296	IGKV2-30	P06310	120 aa		11.75	□□□□□ -0.53
FGFR1-223	ENST00000496296	DMBT1	Q9UGM3	2413 aa	Predicted RBP	11.74	□□□□□ -0.53
FGFR1-223	ENST00000496296	RETNLB	Q9BQ08	111 aa		11.74	□□□□□ -0.53
FGFR1-223	ENST00000496296	HRES1	P13985	223 aa		11.73	□□□□□ -0.53
FGFR1-223	ENST00000496296	MT1HL1	P0DM35	61 aa		11.72	□□□□□ -0.53
FGFR1-223	ENST00000496296	PRR15L	Q9BU68	103 aa		11.68	□□□□□ -0.54
FGFR1-223	ENST00000496296	LINC01558	Q9Y6Z2	57 aa		11.68	□□□□□ -0.54
FGFR1-223	ENST00000496296	HERC1	Q15751	4861 aa		11.67	□□□□□ -0.54
FGFR1-223	ENST00000496296		Q75L30	129 aa		11.67	□□□□□ -0.54
FGFR1-223	ENST00000496296	TNXB	P22105	4242 aa		11.65	□□□□□ -0.55
FGFR1-223	ENST00000496296	DMAC1	Q96GE9	116 aa		11.64	□□□□□ -0.55
FGFR1-223	ENST00000496296	CHKB-CPT1B	H3BT56	60 aa		11.62	□□□□□ -0.55
FGFR1-223	ENST00000496296		J3QL48	77 aa		11.62	□□□□□ -0.55
FGFR1-223	ENST00000496296	ACYP2	P14621	99 aa		11.61	□□□□□ -0.55
FGFR1-223	ENST00000496296	C9orf92	A6NGG3	77 aa		11.59	□□□□□ -0.55
FGFR1-223	ENST00000496296	C20orf166-AS1	Q96NR2	134 aa		11.52	□□□□□ -0.57
FGFR1-223	ENST00000496296		A8MUU9	505 aa		11.51	□□□□□ -0.57
FGFR1-223	ENST00000496296	IGKV2D-30	A0A075B6S6	120 aa		11.49	□□□□□ -0.57
FGFR1-223	ENST00000496296		A6NED7	52 aa		11.47	□□□□□ -0.57
FGFR1-223	ENST00000496296	C7orf65	Q6ZTY9	151 aa		11.46	□□□□□ -0.58
FGFR1-223	ENST00000496296	LCA10	Q71F78	164 aa		11.44	□□□□□ -0.58
FGFR1-223	ENST00000496296	CDC42SE1	Q9NRR8	79 aa		11.42	□□□□□ -0.58
FGFR1-223	ENST00000496296		A8MU10	97 aa		11.42	□□□□□ -0.58
FGFR1-223	ENST00000496296	ATP11AUN	Q6ZP68	121 aa		11.39	□□□□□ -0.59
FGFR1-223	ENST00000496296	SPINK7	P58062	85 aa		11.32	□□□□□ -0.6
FGFR1-223	ENST00000496296	PMAIP1	Q13794	54 aa		11.31	□□□□□ -0.6
FGFR1-223	ENST00000496296	XP32	Q5T750	250 aa		11.3	□□□□□ -0.6
FGFR1-223	ENST00000496296	TPRXL	Q17RH7	258 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 86 ms