RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 A8MWP4 228 aa4.18□□□□□ -1.74
USP39-219ENST00000496047 ATP5EP56381 51 aaPredicted RBP4.18□□□□□ -1.74
USP39-219ENST00000496047 CD164Q04900 197 aa4.18□□□□□ -1.74
USP39-219ENST00000496047 KLKP1Q107X0 134 aa4.17□□□□□ -1.74
USP39-219ENST00000496047 FAM229BQ4G0N7 80 aa4.17□□□□□ -1.74
USP39-219ENST00000496047 A0A0G2JQZ4 141 aa4.16□□□□□ -1.74
USP39-219ENST00000496047 KRTAP10-1P60331 282 aa4.16□□□□□ -1.74
USP39-219ENST00000496047 HRCT1Q6UXD1 115 aa4.16□□□□□ -1.74
USP39-219ENST00000496047 CASC2Q6XLA1 102 aa4.16□□□□□ -1.74
USP39-219ENST00000496047 PRR15Q8IV56 129 aa4.16□□□□□ -1.74
USP39-219ENST00000496047 TMEM254Q8TBM7 123 aa4.16□□□□□ -1.74
USP39-219ENST00000496047 HECTD4Q9Y4D8 3996 aa4.15□□□□□ -1.74
USP39-219ENST00000496047 FAM236DA0A1B0GTK5 79 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 FAM236CP0DP71 79 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 MP68P56378 58 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 DEFB116Q30KQ4 102 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 C5orf47Q569G3 176 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 WFDC13Q8IUB5 93 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 LIMD2Q9BT23 127 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 OCR1Q9BZK8 76 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 LINC00472Q9H8W2 130 aa4.15□□□□□ -1.75
USP39-219ENST00000496047 FRAS1Q86XX4 4008 aa4.14□□□□□ -1.75
USP39-219ENST00000496047 DNAH17Q9UFH2 4485 aa4.13□□□□□ -1.75
USP39-219ENST00000496047 H3BPC8 53 aa4.13□□□□□ -1.75
USP39-219ENST00000496047 hDV103S1A0JD37 113 aa4.12□□□□□ -1.75
USP39-219ENST00000496047 TP53AIP1Q9HCN2 124 aa4.12□□□□□ -1.75
USP39-219ENST00000496047 SNURFQ9Y675 71 aa4.12□□□□□ -1.75
USP39-219ENST00000496047 KMT2AQ03164 3969 aa4.12□□□□□ -1.75
USP39-219ENST00000496047 A0A1B0GVX0 72 aa4.11□□□□□ -1.75
USP39-219ENST00000496047 C8orf87E5RJ46 101 aa4.11□□□□□ -1.75
USP39-219ENST00000496047 ASB16-AS1Q495Z4 193 aa4.11□□□□□ -1.75
USP39-219ENST00000496047 SPINK6Q6UWN8 80 aa4.11□□□□□ -1.75
USP39-219ENST00000496047 A0A0U1RQV1 116 aa4.1□□□□□ -1.75
USP39-219ENST00000496047 MMP24-AS1A0A0U1RRL7 71 aa4.1□□□□□ -1.75
USP39-219ENST00000496047 H7BZZ5 65 aa4.1□□□□□ -1.75
USP39-219ENST00000496047 C8orf17Q9NRJ1 99 aa4.1□□□□□ -1.75
USP39-219ENST00000496047 ANAPC11Q9NYG5 84 aa4.1□□□□□ -1.75
USP39-219ENST00000496047 IGHV6-1A0A0B4J1U7 121 aa4.09□□□□□ -1.75
USP39-219ENST00000496047 KRTAP29-1A8MX34 341 aaPredicted RBP4.09□□□□□ -1.75
USP39-219ENST00000496047 NDUFS5O43920 106 aa4.09□□□□□ -1.75
USP39-219ENST00000496047 RPS28P62857 69 aaKnown RBP4.09□□□□□ -1.75
USP39-219ENST00000496047 TYMSOSQ8TAI1 123 aa4.09□□□□□ -1.75
USP39-219ENST00000496047 MPLKIPQ8TAP9 179 aa4.09□□□□□ -1.75
USP39-219ENST00000496047 Q96NJ1 140 aa4.09□□□□□ -1.75
USP39-219ENST00000496047 DNAH2Q9P225 4427 aa4.08□□□□□ -1.76
USP39-219ENST00000496047 TRAV22A0A0B4J277 110 aa4.08□□□□□ -1.76
USP39-219ENST00000496047 H0Y9P7 68 aa4.08□□□□□ -1.76
USP39-219ENST00000496047 KRTAP15-1Q3LI76 137 aa4.08□□□□□ -1.76
USP39-219ENST00000496047 Q5XG85 94 aa4.08□□□□□ -1.76
USP39-219ENST00000496047 MRPL34Q9BQ48 92 aaKnown RBP4.08□□□□□ -1.76
USP39-219ENST00000496047 SERP1Q9Y6X1 66 aa4.08□□□□□ -1.76
USP39-219ENST00000496047 SPAG11AQ6PDA7 123 aa4.07□□□□□ -1.76
USP39-219ENST00000496047 CYSTM1Q9H1C7 97 aa4.07□□□□□ -1.76
USP39-219ENST00000496047 DMBT1Q9UGM3 2413 aaPredicted RBP4.07□□□□□ -1.76
USP39-219ENST00000496047 SPINK1P00995 79 aa4.06□□□□□ -1.76
USP39-219ENST00000496047 A0A087X002 238 aa4.05□□□□□ -1.76
USP39-219ENST00000496047 A0A1B0GVY2 172 aa4.05□□□□□ -1.76
USP39-219ENST00000496047 RPS29P62273 56 aaKnown RBP4.05□□□□□ -1.76
USP39-219ENST00000496047 LINC00208Q96KT6 92 aa4.05□□□□□ -1.76
USP39-219ENST00000496047 KRTAP13-2Q52LG2 175 aa4.04□□□□□ -1.76
USP39-219ENST00000496047 KRTAP1-4P0C5Y4 121 aa4.03□□□□□ -1.76
USP39-219ENST00000496047 LINC00313P59037 77 aa4.03□□□□□ -1.76
USP39-219ENST00000496047 LINC00304Q8N9R0 145 aa4.03□□□□□ -1.76
USP39-219ENST00000496047 C1orf64Q8NEQ6 169 aa4.02□□□□□ -1.77
USP39-219ENST00000496047 ZCCHC13Q8WW36 166 aaKnown RBP4.02□□□□□ -1.77
USP39-219ENST00000496047 DNAH8Q96JB1 4490 aa4.01□□□□□ -1.77
USP39-219ENST00000496047 LOC101927531A0A1B0GV80 90 aa4.01□□□□□ -1.77
USP39-219ENST00000496047 SPANXA2-OT1Q8N9U9 137 aa4.01□□□□□ -1.77
USP39-219ENST00000496047 DNAH5Q8TE73 4624 aa4□□□□□ -1.77
USP39-219ENST00000496047 SMR3BP02814 79 aaPredicted RBP4□□□□□ -1.77
USP39-219ENST00000496047 C1orf195Q5TG92 126 aa4□□□□□ -1.77
USP39-219ENST00000496047 SMIM26A0A096LP01 95 aa3.99□□□□□ -1.77
USP39-219ENST00000496047 A0A0A0MQY5 61 aa3.99□□□□□ -1.77
USP39-219ENST00000496047 CYP4F30PQ9H0H9 118 aa3.99□□□□□ -1.77
USP39-219ENST00000496047 PRR26Q8N8Z3 221 aa3.98□□□□□ -1.77
USP39-219ENST00000496047 PKD1P98161 4303 aa3.97□□□□□ -1.77
USP39-219ENST00000496047 DNAH11Q96DT5 4516 aa3.97□□□□□ -1.77
USP39-219ENST00000496047 FAT2Q9NYQ8 4349 aa3.95□□□□□ -1.78
USP39-219ENST00000496047 SRRM2Q9UQ35 2752 aaKnown RBP3.95□□□□□ -1.78
USP39-219ENST00000496047 PCOTHQ58A44 107 aa3.94□□□□□ -1.78
USP39-219ENST00000496047 Q8N9P0 234 aaPredicted RBP3.94□□□□□ -1.78
USP39-219ENST00000496047 HSPG2P98160 4391 aa3.93□□□□□ -1.78
USP39-219ENST00000496047 IGLV7-46A0A075B6I9 117 aa3.93□□□□□ -1.78
USP39-219ENST00000496047 NOTCH2NLQ7Z3S9 236 aa3.93□□□□□ -1.78
USP39-219ENST00000496047 V9GYY9 64 aa3.93□□□□□ -1.78
USP39-219ENST00000496047 DYNC1H1Q14204 4646 aaKnown RBP3.92□□□□□ -1.78
USP39-219ENST00000496047 PRR4Q16378 134 aa3.92□□□□□ -1.78
USP39-219ENST00000496047 Q5VSD8 79 aa3.92□□□□□ -1.78
USP39-219ENST00000496047 PKHD1P08F94 4074 aa3.92□□□□□ -1.78
USP39-219ENST00000496047 OXTP01178 125 aa3.91□□□□□ -1.78
USP39-219ENST00000496047 KRTAP10-4P60372 401 aaPredicted RBP3.9□□□□□ -1.79
USP39-219ENST00000496047 Q5W150 140 aa3.9□□□□□ -1.79
USP39-219ENST00000496047 KRTAP16-1A8MUX0 517 aa3.89□□□□□ -1.79
USP39-219ENST00000496047 IGKV2-30P06310 120 aa3.89□□□□□ -1.79
USP39-219ENST00000496047 VPS13BQ7Z7G8 4022 aa3.88□□□□□ -1.79
USP39-219ENST00000496047 C7orf65Q6ZTY9 151 aa3.88□□□□□ -1.79
USP39-219ENST00000496047 COA5Q86WW8 74 aa3.88□□□□□ -1.79
USP39-219ENST00000496047 ACYP2P14621 99 aa3.87□□□□□ -1.79
USP39-219ENST00000496047 KRTAP13-3Q3SY46 172 aa3.87□□□□□ -1.79
USP39-219ENST00000496047 FP248Q71RG6 208 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms