RNA–Protein interactions for RNA: ENST00000495619.1

NCKAP1-208, Transcript of NCK associated protein 1, humanhuman

TSL 3

Gene NCKAP1, Length 665 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKAP1-208ENST00000495619 BSNQ9UPA5 3926 aa0.78□□□□□ -2.28
NCKAP1-208ENST00000495619 HECTD1Q9ULT8 2610 aa0.78□□□□□ -2.29
NCKAP1-208ENST00000495619 TENM4Q6N022 2769 aa0.77□□□□□ -2.29
NCKAP1-208ENST00000495619 SRRM2Q9UQ35 2752 aaKnown RBP0.77□□□□□ -2.29
NCKAP1-208ENST00000495619 U3KQA8 63 aa0.77□□□□□ -2.29
NCKAP1-208ENST00000495619 CCDC168Q8NDH2 2452 aa0.76□□□□□ -2.29
NCKAP1-208ENST00000495619 DEFB136Q30KP8 78 aa0.76□□□□□ -2.29
NCKAP1-208ENST00000495619 DEFB110Q30KQ9 67 aa0.76□□□□□ -2.29
NCKAP1-208ENST00000495619 VWFP04275 2813 aa0.76□□□□□ -2.29
NCKAP1-208ENST00000495619 NBASA2RRP1 2371 aa0.76□□□□□ -2.29
NCKAP1-208ENST00000495619 AKAP13Q12802 2813 aa0.75□□□□□ -2.29
NCKAP1-208ENST00000495619 TENM2Q9NT68 2774 aa0.75□□□□□ -2.29
NCKAP1-208ENST00000495619 ATRQ13535 2644 aa0.75□□□□□ -2.29
NCKAP1-208ENST00000495619 APC2O95996 2303 aa0.75□□□□□ -2.29
NCKAP1-208ENST00000495619 TNRC18O15417 2968 aaPredicted RBP0.75□□□□□ -2.29
NCKAP1-208ENST00000495619 PRM1P04553 51 aa0.74□□□□□ -2.29
NCKAP1-208ENST00000495619 SPTBN4Q9H254 2564 aa0.74□□□□□ -2.29
NCKAP1-208ENST00000495619 CHD8Q9HCK8 2581 aa0.74□□□□□ -2.29
NCKAP1-208ENST00000495619 OTOGQ6ZRI0 2925 aa0.73□□□□□ -2.29
NCKAP1-208ENST00000495619 UBR5O95071 2799 aaPredicted RBP0.73□□□□□ -2.29
NCKAP1-208ENST00000495619 MGAQ8IWI9 3026 aa0.72□□□□□ -2.29
NCKAP1-208ENST00000495619 SETD2Q9BYW2 2564 aaPredicted RBP0.72□□□□□ -2.29
NCKAP1-208ENST00000495619 ANK2Q01484 3957 aa0.72□□□□□ -2.29
NCKAP1-208ENST00000495619 CHD6Q8TD26 2715 aa0.72□□□□□ -2.29
NCKAP1-208ENST00000495619 KRTAP19-3Q7Z4W3 81 aa0.72□□□□□ -2.29
NCKAP1-208ENST00000495619 NBPF19A0A087WUL8 3843 aa0.71□□□□□ -2.3
NCKAP1-208ENST00000495619 LYSTQ99698 3801 aa0.71□□□□□ -2.3
NCKAP1-208ENST00000495619 BDP1A6H8Y1 2624 aa0.71□□□□□ -2.3
NCKAP1-208ENST00000495619 DEFB124Q8NES8 71 aa0.7□□□□□ -2.3
NCKAP1-208ENST00000495619 HIVEP3Q5T1R4 2406 aa0.7□□□□□ -2.3
NCKAP1-208ENST00000495619 PIEZO1Q92508 2521 aa0.7□□□□□ -2.3
NCKAP1-208ENST00000495619 APCP25054 2843 aa0.69□□□□□ -2.3
NCKAP1-208ENST00000495619 USP24Q9UPU5 2620 aa0.69□□□□□ -2.3
NCKAP1-208ENST00000495619 KMT2AQ03164 3969 aa0.69□□□□□ -2.3
NCKAP1-208ENST00000495619 TNXBP22105 4242 aa0.69□□□□□ -2.3
NCKAP1-208ENST00000495619 DEFB108BQ8NET1 73 aa0.68□□□□□ -2.3
NCKAP1-208ENST00000495619 COX14Q96I36 57 aa0.68□□□□□ -2.3
NCKAP1-208ENST00000495619 MAP1BP46821 2468 aaKnown RBP0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 FRAS1Q86XX4 4008 aa0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 ZFHX4Q86UP3 3567 aa0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 VPS13DQ5THJ4 4388 aa0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 KRTAP8-1Q8IUC2 63 aa0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 VPS13BQ7Z7G8 4022 aa0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 FAM186AA6NE01 2351 aa0.67□□□□□ -2.3
NCKAP1-208ENST00000495619 DNAH11Q96DT5 4516 aa0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 CRYBG3Q68DQ2 2970 aa0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 ACANP16112 2415 aa0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 RIF1Q5UIP0 2472 aaKnown RBP0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 FRYQ5TBA9 3013 aa0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 FAT2Q9NYQ8 4349 aa0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 MTORP42345 2549 aa0.66□□□□□ -2.3
NCKAP1-208ENST00000495619 SPENQ96T58 3664 aaKnown RBP0.65□□□□□ -2.31
NCKAP1-208ENST00000495619 COL12A1Q99715 3063 aa0.65□□□□□ -2.31
NCKAP1-208ENST00000495619 DCHS2Q6V1P9 2916 aa0.65□□□□□ -2.31
NCKAP1-208ENST00000495619 STAB1Q9NY15 2570 aa0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 CUBNO60494 3623 aa0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 A0A096LPF7 62 aa0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 MYCBP2O75592 4640 aa0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 PRKDCP78527 4128 aaKnown RBP0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 PDZD2O15018 2839 aa0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 CEP250Q9BV73 2442 aa0.64□□□□□ -2.31
NCKAP1-208ENST00000495619 DEFB133Q30KQ1 61 aa0.63□□□□□ -2.31
NCKAP1-208ENST00000495619 RANBP2P49792 3224 aaKnown RBP0.62□□□□□ -2.31
NCKAP1-208ENST00000495619 GCN1Q92616 2671 aaKnown RBP0.62□□□□□ -2.31
NCKAP1-208ENST00000495619 PTPN13Q12923 2485 aa0.62□□□□□ -2.31
NCKAP1-208ENST00000495619 AKAP9Q99996 3911 aa0.62□□□□□ -2.31
NCKAP1-208ENST00000495619 RELNP78509 3460 aa0.62□□□□□ -2.31
NCKAP1-208ENST00000495619 NCOR2Q9Y618 2525 aa0.62□□□□□ -2.31
NCKAP1-208ENST00000495619 EPG5Q9HCE0 2579 aa0.61□□□□□ -2.31
NCKAP1-208ENST00000495619 NF1P21359 2839 aa0.61□□□□□ -2.31
NCKAP1-208ENST00000495619 SPTBN5Q9NRC6 3674 aaKnown RBP0.61□□□□□ -2.31
NCKAP1-208ENST00000495619 SACSQ9NZJ4 4579 aa0.61□□□□□ -2.31
NCKAP1-208ENST00000495619 SPRR2DP22532 72 aa0.61□□□□□ -2.31
NCKAP1-208ENST00000495619 COL6A3P12111 3177 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 SMR3BP02814 79 aaPredicted RBP0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 LINC01556Q5JQF7 62 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 Q9Y3F1 56 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 SZT2Q5T011 3432 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 FLNCQ14315 2725 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 CELSR3Q9NYQ7 3312 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 ZZEF1O43149 2961 aa0.6□□□□□ -2.31
NCKAP1-208ENST00000495619 SONP18583 2426 aaKnown RBP0.59□□□□□ -2.31
NCKAP1-208ENST00000495619 DNAH3Q8TD57 4116 aa0.59□□□□□ -2.31
NCKAP1-208ENST00000495619 CFAP54Q96N23 3096 aa0.59□□□□□ -2.31
NCKAP1-208ENST00000495619 ACACBO00763 2458 aa0.59□□□□□ -2.31
NCKAP1-208ENST00000495619 DNAH7Q8WXX0 4024 aa0.59□□□□□ -2.32
NCKAP1-208ENST00000495619 DMXL1Q9Y485 3027 aa0.59□□□□□ -2.32
NCKAP1-208ENST00000495619 LRRK2Q5S007 2527 aa0.59□□□□□ -2.32
NCKAP1-208ENST00000495619 ANKHD1Q8IWZ3 2542 aaKnown RBP0.59□□□□□ -2.32
NCKAP1-208ENST00000495619 COL7A1Q02388 2944 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 SPG11Q96JI7 2443 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 PKD1L1Q8TDX9 2849 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 MT1AP04731 61 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 SPRR2BP35325 72 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 RPS29P62273 56 aaKnown RBP0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 HECTD4Q9Y4D8 3996 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 PKHD1L1Q86WI1 4243 aa0.58□□□□□ -2.32
NCKAP1-208ENST00000495619 USP9YO00507 2555 aaPredicted RBP0.57□□□□□ -2.32
NCKAP1-208ENST00000495619 LAMA5O15230 3695 aa0.57□□□□□ -2.32
NCKAP1-208ENST00000495619 SETXQ7Z333 2677 aaKnown RBP0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms