RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 K7EQZ3 153 aa10.73□□□□□ -0.69
USP39-218ENST00000493829 CDIP1Q9H305 208 aa10.73□□□□□ -0.69
USP39-218ENST00000493829 A0A1B0GVX0 72 aa10.72□□□□□ -0.69
USP39-218ENST00000493829 NDUFB1O75438 58 aa10.71□□□□□ -0.69
USP39-218ENST00000493829 LINC00643Q86TS7 51 aa10.69□□□□□ -0.7
USP39-218ENST00000493829 KRTAP13-3Q3SY46 172 aa10.69□□□□□ -0.7
USP39-218ENST00000493829 CXCL6P80162 114 aa10.68□□□□□ -0.7
USP39-218ENST00000493829 NOTCH2NLQ7Z3S9 236 aa10.68□□□□□ -0.7
USP39-218ENST00000493829 PRR15Q8IV56 129 aa10.67□□□□□ -0.7
USP39-218ENST00000493829 ATP5EP2Q5VTU8 51 aa10.66□□□□□ -0.7
USP39-218ENST00000493829 TPRXLQ17RH7 258 aa10.65□□□□□ -0.7
USP39-218ENST00000493829 HMCN2Q8NDA2 5059 aa10.65□□□□□ -0.71
USP39-218ENST00000493829 LPAP08519 4548 aa10.64□□□□□ -0.71
USP39-218ENST00000493829 LINC00313P59037 77 aa10.63□□□□□ -0.71
USP39-218ENST00000493829 C8orf17Q9NRJ1 99 aa10.62□□□□□ -0.71
USP39-218ENST00000493829 HIST1H4AP62805 103 aaKnown RBP10.6□□□□□ -0.71
USP39-218ENST00000493829 C8orf87E5RJ46 101 aa10.6□□□□□ -0.71
USP39-218ENST00000493829 MMP24-AS1A0A0U1RRL7 71 aa10.58□□□□□ -0.72
USP39-218ENST00000493829 XP32Q5T750 250 aa10.57□□□□□ -0.72
USP39-218ENST00000493829 WFDC13Q8IUB5 93 aa10.57□□□□□ -0.72
USP39-218ENST00000493829 MT-ATP8P03928 68 aa10.56□□□□□ -0.72
USP39-218ENST00000493829 A0A087WVE0 104 aa10.54□□□□□ -0.72
USP39-218ENST00000493829 KRTAP16-1A8MUX0 517 aa10.54□□□□□ -0.72
USP39-218ENST00000493829 HCG22E2RYF7 251 aa10.52□□□□□ -0.73
USP39-218ENST00000493829 hDV103S1A0JD37 113 aa10.51□□□□□ -0.73
USP39-218ENST00000493829 CASC2Q6XLA1 102 aa10.51□□□□□ -0.73
USP39-218ENST00000493829 LRP2P98164 4655 aa10.47□□□□□ -0.73
USP39-218ENST00000493829 TMEM254Q8TBM7 123 aa10.47□□□□□ -0.73
USP39-218ENST00000493829 MRPL34Q9BQ48 92 aaKnown RBP10.46□□□□□ -0.74
USP39-218ENST00000493829 NDUFS5O43920 106 aa10.44□□□□□ -0.74
USP39-218ENST00000493829 C20orf166-AS1Q96NR2 134 aa10.44□□□□□ -0.74
USP39-218ENST00000493829 A8MUU9 505 aa10.42□□□□□ -0.74
USP39-218ENST00000493829 RPL37P61927 97 aaKnown RBP10.42□□□□□ -0.74
USP39-218ENST00000493829 Q75L30 129 aa10.41□□□□□ -0.74
USP39-218ENST00000493829 Q8N9P0 234 aaPredicted RBP10.39□□□□□ -0.75
USP39-218ENST00000493829 IMUPQ9GZP8 106 aa10.38□□□□□ -0.75
USP39-218ENST00000493829 PCOTHQ58A44 107 aa10.34□□□□□ -0.75
USP39-218ENST00000493829 ATP11AUNQ6ZP68 121 aa10.33□□□□□ -0.76
USP39-218ENST00000493829 FAM236AA0A1B0GUQ0 79 aa10.31□□□□□ -0.76
USP39-218ENST00000493829 FAM236BA0A1B0GV22 79 aa10.31□□□□□ -0.76
USP39-218ENST00000493829 SEC61BP60468 96 aaKnown RBP10.31□□□□□ -0.76
USP39-218ENST00000493829 ZCCHC13Q8WW36 166 aaKnown RBP10.28□□□□□ -0.76
USP39-218ENST00000493829 SCGB1A1P11684 91 aa10.27□□□□□ -0.77
USP39-218ENST00000493829 UBR4Q5T4S7 5183 aa10.26□□□□□ -0.77
USP39-218ENST00000493829 Q5W150 140 aa10.23□□□□□ -0.77
USP39-218ENST00000493829 MUC17Q685J3 4493 aa10.22□□□□□ -0.77
USP39-218ENST00000493829 TP53AIP1Q9HCN2 124 aa10.22□□□□□ -0.77
USP39-218ENST00000493829 OCR1Q9BZK8 76 aa10.18□□□□□ -0.78
USP39-218ENST00000493829 KRTAP4-1Q9BYQ7 146 aa10.16□□□□□ -0.78
USP39-218ENST00000493829 UQCRQO14949 82 aa10.15□□□□□ -0.79
USP39-218ENST00000493829 TRAV22A0A0B4J277 110 aa10.13□□□□□ -0.79
USP39-218ENST00000493829 ATOX1O00244 68 aa10.11□□□□□ -0.79
USP39-218ENST00000493829 H0Y9P7 68 aa10.1□□□□□ -0.79
USP39-218ENST00000493829 IGKV2D-30A0A075B6S6 120 aa10.09□□□□□ -0.79
USP39-218ENST00000493829 IGKV2-30P06310 120 aa10.09□□□□□ -0.79
USP39-218ENST00000493829 RNF213Q63HN8 5207 aa10.08□□□□□ -0.8
USP39-218ENST00000493829 SPINK7P58062 85 aa10.06□□□□□ -0.8
USP39-218ENST00000493829 SMIM20Q8N5G0 67 aa10.06□□□□□ -0.8
USP39-218ENST00000493829 TRAV7A0A075B6U4 112 aa10.05□□□□□ -0.8
USP39-218ENST00000493829 MUC2Q02817 5179 aa10.03□□□□□ -0.8
USP39-218ENST00000493829 C7orf65Q6ZTY9 151 aa10.02□□□□□ -0.8
USP39-218ENST00000493829 MP68P56378 58 aa10.01□□□□□ -0.81
USP39-218ENST00000493829 C5orf47Q569G3 176 aa10□□□□□ -0.81
USP39-218ENST00000493829 LINC00208Q96KT6 92 aa9.99□□□□□ -0.81
USP39-218ENST00000493829 SERP2Q8N6R1 65 aa9.98□□□□□ -0.81
USP39-218ENST00000493829 C1orf64Q8NEQ6 169 aa9.98□□□□□ -0.81
USP39-218ENST00000493829 LOC101927531A0A1B0GV80 90 aa9.96□□□□□ -0.82
USP39-218ENST00000493829 HRES1P13985 223 aa9.93□□□□□ -0.82
USP39-218ENST00000493829 ANAPC13Q9BS18 74 aa9.93□□□□□ -0.82
USP39-218ENST00000493829 CYP4F30PQ9H0H9 118 aa9.93□□□□□ -0.82
USP39-218ENST00000493829 H3BPC8 53 aa9.88□□□□□ -0.83
USP39-218ENST00000493829 SNURFQ9Y675 71 aa9.88□□□□□ -0.83
USP39-218ENST00000493829 C20orf197Q8N268 126 aa9.87□□□□□ -0.83
USP39-218ENST00000493829 COX7CP15954 63 aa9.87□□□□□ -0.83
USP39-218ENST00000493829 A0A0U1RQV1 116 aa9.86□□□□□ -0.83
USP39-218ENST00000493829 KLKP1Q107X0 134 aa9.85□□□□□ -0.83
USP39-218ENST00000493829 C4orf26Q17RF5 130 aa9.84□□□□□ -0.83
USP39-218ENST00000493829 RBM12B-AS1Q9P1G2 102 aa9.83□□□□□ -0.84
USP39-218ENST00000493829 FAM236DA0A1B0GTK5 79 aa9.82□□□□□ -0.84
USP39-218ENST00000493829 FAM236CP0DP71 79 aa9.82□□□□□ -0.84
USP39-218ENST00000493829 MPLKIPQ8TAP9 179 aa9.82□□□□□ -0.84
USP39-218ENST00000493829 COX6B2Q6YFQ2 88 aa9.81□□□□□ -0.84
USP39-218ENST00000493829 KRTAP19-2Q3LHN2 52 aa9.79□□□□□ -0.84
USP39-218ENST00000493829 CCDC179H3BU77 68 aa9.73□□□□□ -0.85
USP39-218ENST00000493829 LCE2CQ5TA81 110 aa9.71□□□□□ -0.86
USP39-218ENST00000493829 CYSTM1Q9H1C7 97 aa9.7□□□□□ -0.86
USP39-218ENST00000493829 FAT4Q6V0I7 4981 aa9.66□□□□□ -0.86
USP39-218ENST00000493829 KRTAP3-1Q9BYR8 98 aa9.66□□□□□ -0.86
USP39-218ENST00000493829 H1FX-AS1Q4G0G2 97 aa9.61□□□□□ -0.87
USP39-218ENST00000493829 H7BZZ5 65 aa9.57□□□□□ -0.88
USP39-218ENST00000493829 MT1HP80294 61 aa9.57□□□□□ -0.88
USP39-218ENST00000493829 NDUFC1O43677 76 aa9.56□□□□□ -0.88
USP39-218ENST00000493829 DMAC1Q96GE9 116 aa9.53□□□□□ -0.88
USP39-218ENST00000493829 A8MUN3 132 aa9.51□□□□□ -0.89
USP39-218ENST00000493829 PCP4P48539 62 aa9.51□□□□□ -0.89
USP39-218ENST00000493829 FLGP20930 4061 aaPredicted RBP9.51□□□□□ -0.89
USP39-218ENST00000493829 SPANXA2-OT1Q8N9U9 137 aa9.51□□□□□ -0.89
USP39-218ENST00000493829 M0R2T5 61 aa9.49□□□□□ -0.89
USP39-218ENST00000493829 S4R3F8 94 aa9.49□□□□□ -0.89
USP39-218ENST00000493829 LCA10Q71F78 164 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms