RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 LINC00472Q9H8W2 130 aa7.99□□□□□ -1.13
HMGN1-216ENST00000486741 KRTAP10-1P60331 282 aa7.99□□□□□ -1.13
HMGN1-216ENST00000486741 C9orf92A6NGG3 77 aa7.98□□□□□ -1.13
HMGN1-216ENST00000486741 LINC00304Q8N9R0 145 aa7.96□□□□□ -1.13
HMGN1-216ENST00000486741 FAM229AH3BQW9 127 aa7.96□□□□□ -1.14
HMGN1-216ENST00000486741 MMP24-AS1A0A0U1RRL7 71 aa7.95□□□□□ -1.14
HMGN1-216ENST00000486741 PRR26Q8N8Z3 221 aa7.95□□□□□ -1.14
HMGN1-216ENST00000486741 PRAC1Q96KF2 57 aa7.95□□□□□ -1.14
HMGN1-216ENST00000486741 ACYP2P14621 99 aa7.95□□□□□ -1.14
HMGN1-216ENST00000486741 CDC42SE1Q9NRR8 79 aa7.94□□□□□ -1.14
HMGN1-216ENST00000486741 Q8N9P0 234 aaPredicted RBP7.91□□□□□ -1.14
HMGN1-216ENST00000486741 FLG2Q5D862 2391 aaPredicted RBP7.91□□□□□ -1.14
HMGN1-216ENST00000486741 AKAP9Q99996 3911 aa7.91□□□□□ -1.14
HMGN1-216ENST00000486741 Q5VV11 94 aa7.9□□□□□ -1.14
HMGN1-216ENST00000486741 SRRM2Q9UQ35 2752 aaKnown RBP7.88□□□□□ -1.15
HMGN1-216ENST00000486741 A0A087X002 238 aa7.86□□□□□ -1.15
HMGN1-216ENST00000486741 UQCR11O14957 56 aa7.86□□□□□ -1.15
HMGN1-216ENST00000486741 MIR22HGQ0VDD5 57 aa7.84□□□□□ -1.15
HMGN1-216ENST00000486741 NOTCH2NLQ7Z3S9 236 aa7.84□□□□□ -1.15
HMGN1-216ENST00000486741 SPANXA2-OT1Q8N9U9 137 aa7.84□□□□□ -1.15
HMGN1-216ENST00000486741 LINC01554Q52M75 96 aa7.83□□□□□ -1.16
HMGN1-216ENST00000486741 LINC00483Q53H64 154 aa7.82□□□□□ -1.16
HMGN1-216ENST00000486741 A8MU10 97 aa7.81□□□□□ -1.16
HMGN1-216ENST00000486741 SPINT4Q6UDR6 99 aa7.8□□□□□ -1.16
HMGN1-216ENST00000486741 Q75L30 129 aa7.8□□□□□ -1.16
HMGN1-216ENST00000486741 KRTAP13-1Q8IUC0 172 aa7.8□□□□□ -1.16
HMGN1-216ENST00000486741 Q8N1X5 172 aa7.8□□□□□ -1.16
HMGN1-216ENST00000486741 KRTAP29-1A8MX34 341 aaPredicted RBP7.79□□□□□ -1.16
HMGN1-216ENST00000486741 FBN3Q75N90 2809 aa7.79□□□□□ -1.16
HMGN1-216ENST00000486741 SPINK7P58062 85 aa7.77□□□□□ -1.17
HMGN1-216ENST00000486741 CSMD3Q7Z407 3707 aa7.76□□□□□ -1.17
HMGN1-216ENST00000486741 IGLV7-46A0A075B6I9 117 aa7.74□□□□□ -1.17
HMGN1-216ENST00000486741 HRES1P13985 223 aa7.74□□□□□ -1.17
HMGN1-216ENST00000486741 LCE6AA0A183 80 aa7.72□□□□□ -1.17
HMGN1-216ENST00000486741 Q5W150 140 aa7.69□□□□□ -1.18
HMGN1-216ENST00000486741 LINC01558Q9Y6Z2 57 aa7.69□□□□□ -1.18
HMGN1-216ENST00000486741 ZCCHC13Q8WW36 166 aaKnown RBP7.68□□□□□ -1.18
HMGN1-216ENST00000486741 KRTAP13-2Q52LG2 175 aa7.68□□□□□ -1.18
HMGN1-216ENST00000486741 CSAG1Q6PB30 78 aa7.67□□□□□ -1.18
HMGN1-216ENST00000486741 MEGF8Q7Z7M0 2845 aa7.67□□□□□ -1.18
HMGN1-216ENST00000486741 COL7A1Q02388 2944 aa7.66□□□□□ -1.18
HMGN1-216ENST00000486741 CRIPTQ9P021 101 aa7.57□□□□□ -1.2
HMGN1-216ENST00000486741 Q5VSD8 79 aa7.56□□□□□ -1.2
HMGN1-216ENST00000486741 ADM2Q7Z4H4 148 aa7.56□□□□□ -1.2
HMGN1-216ENST00000486741 J3QL48 77 aa7.56□□□□□ -1.2
HMGN1-216ENST00000486741 A6NN06 94 aa7.55□□□□□ -1.2
HMGN1-216ENST00000486741 HUWE1Q7Z6Z7 4374 aaKnown RBP7.53□□□□□ -1.2
HMGN1-216ENST00000486741 Q6ZSA8 131 aa7.5□□□□□ -1.21
HMGN1-216ENST00000486741 KRTAP1-4P0C5Y4 121 aa7.46□□□□□ -1.22
HMGN1-216ENST00000486741 ASB16-AS1Q495Z4 193 aa7.45□□□□□ -1.22
HMGN1-216ENST00000486741 KRTAP21-3Q3LHN1 58 aa7.44□□□□□ -1.22
HMGN1-216ENST00000486741 A0A0D9SG42 100 aa7.44□□□□□ -1.22
HMGN1-216ENST00000486741 DMAC1Q96GE9 116 aa7.42□□□□□ -1.22
HMGN1-216ENST00000486741 A0A1B0GU33 70 aa7.36□□□□□ -1.23
HMGN1-216ENST00000486741 COX6B2Q6YFQ2 88 aa7.32□□□□□ -1.24
HMGN1-216ENST00000486741 DNAH9Q9NYC9 4486 aa7.32□□□□□ -1.24
HMGN1-216ENST00000486741 DNAH10Q8IVF4 4471 aa7.29□□□□□ -1.24
HMGN1-216ENST00000486741 PLECQ15149 4684 aaKnown RBP7.28□□□□□ -1.24
HMGN1-216ENST00000486741 SPATA8Q6RVD6 105 aa7.26□□□□□ -1.25
HMGN1-216ENST00000486741 ANK2Q01484 3957 aa7.26□□□□□ -1.25
HMGN1-216ENST00000486741 DNHD1Q96M86 4753 aa7.25□□□□□ -1.25
HMGN1-216ENST00000486741 RPS29P62273 56 aaKnown RBP7.24□□□□□ -1.25
HMGN1-216ENST00000486741 S4R3F8 94 aa7.2□□□□□ -1.26
HMGN1-216ENST00000486741 KRTAP16-1A8MUX0 517 aa7.19□□□□□ -1.26
HMGN1-216ENST00000486741 A8MUU9 505 aa7.15□□□□□ -1.27
HMGN1-216ENST00000486741 KRTAP25-1Q3LHN0 102 aa7.15□□□□□ -1.27
HMGN1-216ENST00000486741 A0A1B0GVY2 172 aa7.14□□□□□ -1.27
HMGN1-216ENST00000486741 ROMO1P60602 79 aa7.13□□□□□ -1.27
HMGN1-216ENST00000486741 C20orf166-AS1Q96NR2 134 aa7.13□□□□□ -1.27
HMGN1-216ENST00000486741 NDUFAF8A1L188 74 aa7.12□□□□□ -1.27
HMGN1-216ENST00000486741 PRKDCP78527 4128 aaKnown RBP7.11□□□□□ -1.27
HMGN1-216ENST00000486741 LUZP6Q538Z0 58 aa7.11□□□□□ -1.27
HMGN1-216ENST00000486741 STARD9Q9P2P6 4700 aa7.11□□□□□ -1.27
HMGN1-216ENST00000486741 DNAH1Q9P2D7 4330 aa7.1□□□□□ -1.27
HMGN1-216ENST00000486741 KRTAP13-3Q3SY46 172 aa7.09□□□□□ -1.27
HMGN1-216ENST00000486741 DNAH11Q96DT5 4516 aa7.08□□□□□ -1.28
HMGN1-216ENST00000486741 RPL37P61927 97 aaKnown RBP7.07□□□□□ -1.28
HMGN1-216ENST00000486741 H1FX-AS1Q4G0G2 97 aa7.07□□□□□ -1.28
HMGN1-216ENST00000486741 LYSTQ99698 3801 aa7.04□□□□□ -1.28
HMGN1-216ENST00000486741 SEC61BP60468 96 aaKnown RBP7.04□□□□□ -1.28
HMGN1-216ENST00000486741 XP32Q5T750 250 aa7.02□□□□□ -1.29
HMGN1-216ENST00000486741 KMT2AQ03164 3969 aa6.97□□□□□ -1.29
HMGN1-216ENST00000486741 CMYA5Q8N3K9 4069 aa6.96□□□□□ -1.29
HMGN1-216ENST00000486741 R4GN34 69 aa6.96□□□□□ -1.3
HMGN1-216ENST00000486741 VPS13DQ5THJ4 4388 aa6.96□□□□□ -1.3
HMGN1-216ENST00000486741 A0A0A0MQY5 61 aa6.96□□□□□ -1.3
HMGN1-216ENST00000486741 DNAH5Q8TE73 4624 aa6.94□□□□□ -1.3
HMGN1-216ENST00000486741 KRTAP10-8P60410 259 aa6.94□□□□□ -1.3
HMGN1-216ENST00000486741 M0R2T5 61 aa6.93□□□□□ -1.3
HMGN1-216ENST00000486741 M0QZ58 72 aa6.91□□□□□ -1.3
HMGN1-216ENST00000486741 DNAH3Q8TD57 4116 aa6.89□□□□□ -1.31
HMGN1-216ENST00000486741 CAMK2N1Q7Z7J9 78 aa6.87□□□□□ -1.31
HMGN1-216ENST00000486741 FAT1Q14517 4588 aa6.87□□□□□ -1.31
HMGN1-216ENST00000486741 DNAH7Q8WXX0 4024 aa6.85□□□□□ -1.31
HMGN1-216ENST00000486741 LRP1BQ9NZR2 4599 aa6.85□□□□□ -1.31
HMGN1-216ENST00000486741 DNAH17Q9UFH2 4485 aa6.83□□□□□ -1.32
HMGN1-216ENST00000486741 DNAH8Q96JB1 4490 aa6.82□□□□□ -1.32
HMGN1-216ENST00000486741 C10orf95Q9H7T3 257 aa6.81□□□□□ -1.32
HMGN1-216ENST00000486741 H0YAA0 97 aa6.81□□□□□ -1.32
HMGN1-216ENST00000486741 DNAH2Q9P225 4427 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms