RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.01□□□□□ -1.29
SQSTM1-208ENST00000485412 A8MUU9 505 aa7□□□□□ -1.29
SQSTM1-208ENST00000485412 MT2AP02795 61 aa7□□□□□ -1.29
SQSTM1-208ENST00000485412 FAM218AQ96MZ4 157 aa6.99□□□□□ -1.29
SQSTM1-208ENST00000485412 SIGMAR1Q99720 223 aa6.99□□□□□ -1.29
SQSTM1-208ENST00000485412 KRTAP16-1A8MUX0 517 aa6.98□□□□□ -1.29
SQSTM1-208ENST00000485412 SCGB1A1P11684 91 aa6.98□□□□□ -1.29
SQSTM1-208ENST00000485412 H3BT86 120 aa6.97□□□□□ -1.29
SQSTM1-208ENST00000485412 LCE2BO14633 110 aa6.97□□□□□ -1.29
SQSTM1-208ENST00000485412 SNCGO76070 127 aa6.97□□□□□ -1.29
SQSTM1-208ENST00000485412 MT1FP04733 61 aa6.96□□□□□ -1.3
SQSTM1-208ENST00000485412 DSCR10P59022 87 aa6.96□□□□□ -1.3
SQSTM1-208ENST00000485412 SYNE2Q8WXH0 6885 aaKnown RBP6.96□□□□□ -1.3
SQSTM1-208ENST00000485412 FAM236DA0A1B0GTK5 79 aa6.95□□□□□ -1.3
SQSTM1-208ENST00000485412 FAM236CP0DP71 79 aa6.95□□□□□ -1.3
SQSTM1-208ENST00000485412 MACF1Q9UPN3 7388 aaKnown RBP6.95□□□□□ -1.3
SQSTM1-208ENST00000485412 A0A087WSZ3 146 aa6.94□□□□□ -1.3
SQSTM1-208ENST00000485412 DNAL4O96015 105 aa6.93□□□□□ -1.3
SQSTM1-208ENST00000485412 BAALC-AS2P0C853 105 aa6.93□□□□□ -1.3
SQSTM1-208ENST00000485412 KRTAP10-10P60014 251 aa6.93□□□□□ -1.3
SQSTM1-208ENST00000485412 H3BQ85 93 aa6.92□□□□□ -1.3
SQSTM1-208ENST00000485412 LINC00846Q9NV44 126 aa6.92□□□□□ -1.3
SQSTM1-208ENST00000485412 SS18L2Q9UHA2 77 aa6.92□□□□□ -1.3
SQSTM1-208ENST00000485412 MT-ATP8P03928 68 aa6.91□□□□□ -1.3
SQSTM1-208ENST00000485412 KRTAP9-3Q9BYQ3 159 aa6.91□□□□□ -1.3
SQSTM1-208ENST00000485412 GHRHP01286 108 aa6.9□□□□□ -1.3
SQSTM1-208ENST00000485412 NDUFV3P56181 108 aaKnown RBP6.9□□□□□ -1.3
SQSTM1-208ENST00000485412 ORMDL1Q9P0S3 153 aa6.9□□□□□ -1.3
SQSTM1-208ENST00000485412 TMEM256-PLSCR3K7ERE1 68 aa6.88□□□□□ -1.31
SQSTM1-208ENST00000485412 NOTCH2NLQ7Z3S9 236 aa6.88□□□□□ -1.31
SQSTM1-208ENST00000485412 A0A1W2PNM2 257 aa6.87□□□□□ -1.31
SQSTM1-208ENST00000485412 HRES1P13985 223 aa6.87□□□□□ -1.31
SQSTM1-208ENST00000485412 MPLKIPQ8TAP9 179 aa6.87□□□□□ -1.31
SQSTM1-208ENST00000485412 RBM12B-AS1Q9P1G2 102 aa6.85□□□□□ -1.31
SQSTM1-208ENST00000485412 FAM240AA0A1B0GVK7 77 aa6.84□□□□□ -1.31
SQSTM1-208ENST00000485412 A0A1B0GV72 72 aa6.82□□□□□ -1.32
SQSTM1-208ENST00000485412 JMJD7-PLA2G4BH0Y9G9 81 aa6.82□□□□□ -1.32
SQSTM1-208ENST00000485412 LINC00313P59037 77 aa6.82□□□□□ -1.32
SQSTM1-208ENST00000485412 IGKV4-1P06312 121 aa6.81□□□□□ -1.32
SQSTM1-208ENST00000485412 DEFB116Q30KQ4 102 aa6.81□□□□□ -1.32
SQSTM1-208ENST00000485412 KRTAP19-6Q3LI70 58 aa6.8□□□□□ -1.32
SQSTM1-208ENST00000485412 PDE6GP18545 87 aa6.76□□□□□ -1.33
SQSTM1-208ENST00000485412 RBM3P98179 157 aaKnown RBP6.76□□□□□ -1.33
SQSTM1-208ENST00000485412 ACYP1P07311 99 aa6.75□□□□□ -1.33
SQSTM1-208ENST00000485412 LINC00472Q9H8W2 130 aa6.75□□□□□ -1.33
SQSTM1-208ENST00000485412 LOC110117498A0A087WWA1 95 aa6.74□□□□□ -1.33
SQSTM1-208ENST00000485412 IGHV6-1A0A0B4J1U7 121 aa6.74□□□□□ -1.33
SQSTM1-208ENST00000485412 KRTAP6-3Q3LI67 103 aa6.74□□□□□ -1.33
SQSTM1-208ENST00000485412 TRBV7-4A0A0J9YYF1 115 aa6.73□□□□□ -1.33
SQSTM1-208ENST00000485412 CCKP06307 115 aa6.73□□□□□ -1.33
SQSTM1-208ENST00000485412 C14orf132Q9NPU4 83 aa6.73□□□□□ -1.33
SQSTM1-208ENST00000485412 DSCR8Q96T75 97 aa6.72□□□□□ -1.33
SQSTM1-208ENST00000485412 Q6ZQT0 140 aa6.7□□□□□ -1.34
SQSTM1-208ENST00000485412 LINC00643Q86TS7 51 aa6.7□□□□□ -1.34
SQSTM1-208ENST00000485412 ANAPC13Q9BS18 74 aa6.7□□□□□ -1.34
SQSTM1-208ENST00000485412 A0A1B0GW54 56 aa6.67□□□□□ -1.34
SQSTM1-208ENST00000485412 IMUPQ9GZP8 106 aa6.67□□□□□ -1.34
SQSTM1-208ENST00000485412 A0A1B0GVX0 72 aa6.65□□□□□ -1.34
SQSTM1-208ENST00000485412 SPINK7P58062 85 aa6.65□□□□□ -1.34
SQSTM1-208ENST00000485412 ZCCHC13Q8WW36 166 aaKnown RBP6.65□□□□□ -1.34
SQSTM1-208ENST00000485412 A8MWP4 228 aa6.64□□□□□ -1.35
SQSTM1-208ENST00000485412 C8orf87E5RJ46 101 aa6.62□□□□□ -1.35
SQSTM1-208ENST00000485412 CCDC179H3BU77 68 aa6.62□□□□□ -1.35
SQSTM1-208ENST00000485412 FAM236AA0A1B0GUQ0 79 aa6.61□□□□□ -1.35
SQSTM1-208ENST00000485412 FAM236BA0A1B0GV22 79 aa6.61□□□□□ -1.35
SQSTM1-208ENST00000485412 Q8N9P0 234 aaPredicted RBP6.61□□□□□ -1.35
SQSTM1-208ENST00000485412 HIST1H4AP62805 103 aaKnown RBP6.59□□□□□ -1.35
SQSTM1-208ENST00000485412 WFDC13Q8IUB5 93 aa6.59□□□□□ -1.35
SQSTM1-208ENST00000485412 NEBP20929 6669 aa6.58□□□□□ -1.36
SQSTM1-208ENST00000485412 IGKV3D-7A0A0C4DH55 119 aa6.57□□□□□ -1.36
SQSTM1-208ENST00000485412 UBL5Q9BZL1 73 aa6.57□□□□□ -1.36
SQSTM1-208ENST00000485412 Q6ZVQ6 151 aa6.54□□□□□ -1.36
SQSTM1-208ENST00000485412 ATP5EP2Q5VTU8 51 aa6.53□□□□□ -1.36
SQSTM1-208ENST00000485412 NREPQ16612 68 aa6.52□□□□□ -1.37
SQSTM1-208ENST00000485412 C8orf17Q9NRJ1 99 aa6.51□□□□□ -1.37
SQSTM1-208ENST00000485412 J3KT08 172 aa6.5□□□□□ -1.37
SQSTM1-208ENST00000485412 ATOX1O00244 68 aa6.5□□□□□ -1.37
SQSTM1-208ENST00000485412 CXCL6P80162 114 aa6.5□□□□□ -1.37
SQSTM1-208ENST00000485412 A0A087WVE0 104 aa6.49□□□□□ -1.37
SQSTM1-208ENST00000485412 MUC12Q9UKN1 5478 aa6.49□□□□□ -1.37
SQSTM1-208ENST00000485412 UQCRQO14949 82 aa6.48□□□□□ -1.37
SQSTM1-208ENST00000485412 COX7CP15954 63 aa6.48□□□□□ -1.37
SQSTM1-208ENST00000485412 KRTAP20-1Q3LI63 56 aa6.46□□□□□ -1.38
SQSTM1-208ENST00000485412 NDUFB1O75438 58 aa6.45□□□□□ -1.38
SQSTM1-208ENST00000485412 BPY2O14599 106 aa6.44□□□□□ -1.38
SQSTM1-208ENST00000485412 SERP2Q8N6R1 65 aa6.43□□□□□ -1.38
SQSTM1-208ENST00000485412 H1FX-AS1Q4G0G2 97 aa6.42□□□□□ -1.38
SQSTM1-208ENST00000485412 MMP24-AS1A0A0U1RRL7 71 aa6.4□□□□□ -1.38
SQSTM1-208ENST00000485412 A6NN06 94 aa6.39□□□□□ -1.39
SQSTM1-208ENST00000485412 PRR15Q8IV56 129 aa6.39□□□□□ -1.39
SQSTM1-208ENST00000485412 CYSTM1Q9H1C7 97 aa6.39□□□□□ -1.39
SQSTM1-208ENST00000485412 MRPL34Q9BQ48 92 aaKnown RBP6.36□□□□□ -1.39
SQSTM1-208ENST00000485412 TMEM254Q8TBM7 123 aa6.35□□□□□ -1.39
SQSTM1-208ENST00000485412 IGKV2D-30A0A075B6S6 120 aa6.33□□□□□ -1.4
SQSTM1-208ENST00000485412 TRAV7A0A075B6U4 112 aa6.33□□□□□ -1.4
SQSTM1-208ENST00000485412 IGKV2-30P06310 120 aa6.33□□□□□ -1.4
SQSTM1-208ENST00000485412 Q5W150 140 aa6.33□□□□□ -1.4
SQSTM1-208ENST00000485412 Q8N9L7 120 aa6.33□□□□□ -1.4
SQSTM1-208ENST00000485412 K7EQZ3 153 aa6.32□□□□□ -1.4
SQSTM1-208ENST00000485412 MT1BP07438 61 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms