RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 KRTAP12-4P60329 112 aa1.56□□□□□ -2.16
VPS13D-207ENST00000476169 MXRA5Q9NR99 2828 aa1.56□□□□□ -2.16
VPS13D-207ENST00000476169 ABCA13Q86UQ4 5058 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 NIPBLQ6KC79 2804 aaeCLIP1.55□□□□□ -2.16
VPS13D-207ENST00000476169 APOBP04114 4563 aaKnown RBP1.55□□□□□ -2.16
VPS13D-207ENST00000476169 TRBV7-7A0A0K0K1E9 115 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 A8MTW9 85 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 SNRPGP15A8MWD9 76 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 UQCR11O14957 56 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 CFAP126Q5VTH2 177 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 S100ZQ8WXG8 99 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 APLNQ9ULZ1 77 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 FAT1Q14517 4588 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 SORL1Q92673 2214 aa1.55□□□□□ -2.16
VPS13D-207ENST00000476169 DNAH5Q8TE73 4624 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 SYS1-DBNDD2H3BUS1 97 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 PMCHL1Q16048 86 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 PYY3Q5JQD4 70 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 SMIM11BQ8TCY0 68 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 LINC01558Q9Y6Z2 57 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 NOTCH1P46531 2555 aa1.54□□□□□ -2.16
VPS13D-207ENST00000476169 K7EP34 96 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 HTN3P15516 51 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 GCHFRP30047 84 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 RPL37P61927 97 aaKnown RBP1.53□□□□□ -2.16
VPS13D-207ENST00000476169 PEA15Q15121 130 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 C10orf113Q5VZT2 155 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 AMELXQ99217 191 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 C20orf78Q9BR46 151 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 NMES1Q9C002 83 aa1.53□□□□□ -2.16
VPS13D-207ENST00000476169 DOCK11Q5JSL3 2073 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 TENM2Q9NT68 2774 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 FXYD6-FXYD2A0A087WZ82 144 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 DEFB131BA0A096LNP1 70 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 ZNF815PA8K554 130 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 CFDP00746 253 aaPredicted RBP1.52□□□□□ -2.17
VPS13D-207ENST00000476169 DEFB130BP0DP73 79 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 DEFB130AP0DP74 79 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 HTN1P15515 57 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 Q6ZRX8 168 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 NOP10Q9NPE3 64 aaKnown RBP1.52□□□□□ -2.17
VPS13D-207ENST00000476169 MAP1AP78559 2803 aaPredicted RBP1.52□□□□□ -2.17
VPS13D-207ENST00000476169 DNAH8Q96JB1 4490 aa1.52□□□□□ -2.17
VPS13D-207ENST00000476169 HSPG2P98160 4391 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 VWFP04275 2813 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 A0A096LPF7 62 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 GVQW2A0A096LPI5 108 aaPredicted RBP1.51□□□□□ -2.17
VPS13D-207ENST00000476169 SFTA3P0C7M3 94 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 SPART-AS1P0CW21 52 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 ARL14EPLP0DKL9 152 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 CRIP1P50238 77 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 COX17Q14061 63 aa1.51□□□□□ -2.17
VPS13D-207ENST00000476169 FLG2Q5D862 2391 aaPredicted RBP1.5□□□□□ -2.17
VPS13D-207ENST00000476169 WNK2Q9Y3S1 2297 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 TRBV25-1A0A075B6N4 114 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 H7BZZ5 65 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 SPINK4O60575 86 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 MGPP08493 103 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 PRR15LQ9BU68 103 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 DNAH6Q9C0G6 4158 aa1.5□□□□□ -2.17
VPS13D-207ENST00000476169 WFDC2Q14508 124 aa1.49□□□□□ -2.17
VPS13D-207ENST00000476169 WFDC10BQ8IUB3 73 aa1.49□□□□□ -2.17
VPS13D-207ENST00000476169 TMEM263Q8WUH6 116 aaKnown RBP1.49□□□□□ -2.17
VPS13D-207ENST00000476169 TIMM8BQ9Y5J9 83 aaPredicted RBP1.49□□□□□ -2.17
VPS13D-207ENST00000476169 MYCBP2O75592 4640 aa1.49□□□□□ -2.17
VPS13D-207ENST00000476169 STAB2Q8WWQ8 2551 aa1.49□□□□□ -2.17
VPS13D-207ENST00000476169 C7orf77A4D0Y5 90 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 NMBP08949 121 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 HAMPP81172 84 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 TDRG1Q3Y452 100 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 UBE2DNLQ8IWF7 75 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 DEFB104AQ8WTQ1 72 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 TMEM167BQ9NRX6 74 aa1.48□□□□□ -2.17
VPS13D-207ENST00000476169 DNAH7Q8WXX0 4024 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 TENM3Q9P273 2699 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 TRAV21A0A0B4J279 112 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 TRBV6-1A0A0K0K1D8 114 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 H3BVH4 76 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 ARMS2P0C7Q2 107 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 SERF2P84101 59 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 ALKAL2Q6UX46 152 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 GNG13Q9P2W3 67 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 HMCN2Q8NDA2 5059 aa1.47□□□□□ -2.17
VPS13D-207ENST00000476169 NBEAL2Q6ZNJ1 2754 aa1.46□□□□□ -2.18
VPS13D-207ENST00000476169 KANTRA0A1W2PQU2 76 aa1.46□□□□□ -2.18
VPS13D-207ENST00000476169 HIGD1BQ9P298 99 aa1.46□□□□□ -2.18
VPS13D-207ENST00000476169 PRO0255Q9UI72 69 aa1.46□□□□□ -2.18
VPS13D-207ENST00000476169 PKD1L1Q8TDX9 2849 aa1.46□□□□□ -2.18
VPS13D-207ENST00000476169 UMAD1C9J7I0 102 aa1.45□□□□□ -2.18
VPS13D-207ENST00000476169 H3BNG1 76 aa1.45□□□□□ -2.18
VPS13D-207ENST00000476169 ETDBQ3ZM63 59 aa1.45□□□□□ -2.18
VPS13D-207ENST00000476169 TNCP24821 2201 aa1.44□□□□□ -2.18
VPS13D-207ENST00000476169 HERC1Q15751 4861 aa1.44□□□□□ -2.18
VPS13D-207ENST00000476169 M0QY20 66 aa1.44□□□□□ -2.18
VPS13D-207ENST00000476169 LELP1Q5T871 98 aa1.44□□□□□ -2.18
VPS13D-207ENST00000476169 CLPSL2Q6UWE3 100 aa1.44□□□□□ -2.18
VPS13D-207ENST00000476169 RPL39LQ96EH5 51 aaKnown RBP1.44□□□□□ -2.18
VPS13D-207ENST00000476169 KMT2AQ03164 3969 aa1.44□□□□□ -2.18
VPS13D-207ENST00000476169 HECTD4Q9Y4D8 3996 aa1.43□□□□□ -2.18
VPS13D-207ENST00000476169 F8WEM9 126 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms