RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 NOTCH2NLQ7Z3S9 236 aa6.38□□□□□ -1.39
VAPB-204ENST00000475243 KRTAP4-16G5E9R7 235 aaPredicted RBP6.37□□□□□ -1.39
VAPB-204ENST00000475243 HIVEP1P15822 2718 aa6.37□□□□□ -1.39
VAPB-204ENST00000475243 A0A0A0MQY5 61 aa6.37□□□□□ -1.39
VAPB-204ENST00000475243 WDFY3Q8IZQ1 3526 aa6.36□□□□□ -1.39
VAPB-204ENST00000475243 ZZEF1O43149 2961 aa6.36□□□□□ -1.39
VAPB-204ENST00000475243 KRTAP11-1Q8IUC1 163 aa6.34□□□□□ -1.39
VAPB-204ENST00000475243 CELSR2Q9HCU4 2923 aa6.33□□□□□ -1.4
VAPB-204ENST00000475243 KRTAP29-1A8MX34 341 aaPredicted RBP6.3□□□□□ -1.4
VAPB-204ENST00000475243 DMXL1Q9Y485 3027 aa6.27□□□□□ -1.41
VAPB-204ENST00000475243 LOC400499M0QZD8 3231 aa6.27□□□□□ -1.41
VAPB-204ENST00000475243 ASPMQ8IZT6 3477 aa6.25□□□□□ -1.41
VAPB-204ENST00000475243 A8MU10 97 aa6.25□□□□□ -1.41
VAPB-204ENST00000475243 FLNCQ14315 2725 aa6.24□□□□□ -1.41
VAPB-204ENST00000475243 A8MUU9 505 aa6.23□□□□□ -1.41
VAPB-204ENST00000475243 TNRC18O15417 2968 aaPredicted RBP6.23□□□□□ -1.41
VAPB-204ENST00000475243 Q6ZRN7 208 aaPredicted RBP6.2□□□□□ -1.42
VAPB-204ENST00000475243 KRTAP7-1Q8IUC3 87 aa6.19□□□□□ -1.42
VAPB-204ENST00000475243 DCHS2Q6V1P9 2916 aa6.18□□□□□ -1.42
VAPB-204ENST00000475243 KRTAP13-2Q52LG2 175 aa6.17□□□□□ -1.42
VAPB-204ENST00000475243 C20orf166-AS1Q96NR2 134 aa6.16□□□□□ -1.42
VAPB-204ENST00000475243 ASB16-AS1Q495Z4 193 aa6.15□□□□□ -1.42
VAPB-204ENST00000475243 DCHS1Q96JQ0 3298 aa6.13□□□□□ -1.43
VAPB-204ENST00000475243 RPS29P62273 56 aaKnown RBP6.11□□□□□ -1.43
VAPB-204ENST00000475243 FBN2P35556 2912 aa6.09□□□□□ -1.43
VAPB-204ENST00000475243 TENM4Q6N022 2769 aa6.09□□□□□ -1.44
VAPB-204ENST00000475243 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
VAPB-204ENST00000475243 ZANQ9Y493 2812 aa6.08□□□□□ -1.44
VAPB-204ENST00000475243 TENM1Q9UKZ4 2725 aa6.07□□□□□ -1.44
VAPB-204ENST00000475243 CELSR1Q9NYQ6 3014 aa6.07□□□□□ -1.44
VAPB-204ENST00000475243 LAMA5O15230 3695 aa6.06□□□□□ -1.44
VAPB-204ENST00000475243 KRTAP13-1Q8IUC0 172 aa6.06□□□□□ -1.44
VAPB-204ENST00000475243 NBPF19A0A087WUL8 3843 aa6.04□□□□□ -1.44
VAPB-204ENST00000475243 NF1P21359 2839 aa6.04□□□□□ -1.44
VAPB-204ENST00000475243 RELNP78509 3460 aa6.03□□□□□ -1.44
VAPB-204ENST00000475243 NIPBLQ6KC79 2804 aaeCLIP6.03□□□□□ -1.44
VAPB-204ENST00000475243 KRTAP16-1A8MUX0 517 aa6.02□□□□□ -1.45
VAPB-204ENST00000475243 A6NN06 94 aa6.02□□□□□ -1.45
VAPB-204ENST00000475243 CSMD1Q96PZ7 3565 aa6□□□□□ -1.45
VAPB-204ENST00000475243 TNP1P09430 55 aa5.99□□□□□ -1.45
VAPB-204ENST00000475243 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
VAPB-204ENST00000475243 ZFHX4Q86UP3 3567 aa5.98□□□□□ -1.45
VAPB-204ENST00000475243 C10orf95Q9H7T3 257 aa5.98□□□□□ -1.45
VAPB-204ENST00000475243 A0A1B0GVY2 172 aa5.97□□□□□ -1.45
VAPB-204ENST00000475243 HRNRQ86YZ3 2850 aaPredicted RBP5.94□□□□□ -1.46
VAPB-204ENST00000475243 KRTAP10-8P60410 259 aa5.92□□□□□ -1.46
VAPB-204ENST00000475243 PKD1L1Q8TDX9 2849 aa5.89□□□□□ -1.47
VAPB-204ENST00000475243 TENM3Q9P273 2699 aa5.87□□□□□ -1.47
VAPB-204ENST00000475243 XP32Q5T750 250 aa5.85□□□□□ -1.47
VAPB-204ENST00000475243 VWFP04275 2813 aa5.83□□□□□ -1.48
VAPB-204ENST00000475243 KRTAP1-4P0C5Y4 121 aa5.81□□□□□ -1.48
VAPB-204ENST00000475243 TGP01266 2768 aa5.8□□□□□ -1.48
VAPB-204ENST00000475243 DMDP11532 3685 aa5.8□□□□□ -1.48
VAPB-204ENST00000475243 KRTAP21-3Q3LHN1 58 aa5.8□□□□□ -1.48
VAPB-204ENST00000475243 ZFHX3Q15911 3703 aa5.79□□□□□ -1.48
VAPB-204ENST00000475243 TENM2Q9NT68 2774 aa5.79□□□□□ -1.48
VAPB-204ENST00000475243 CUBNO60494 3623 aa5.78□□□□□ -1.48
VAPB-204ENST00000475243 MXRA5Q9NR99 2828 aa5.78□□□□□ -1.48
VAPB-204ENST00000475243 PDZD2O15018 2839 aa5.77□□□□□ -1.49
VAPB-204ENST00000475243 KRTAP10-10P60014 251 aa5.77□□□□□ -1.49
VAPB-204ENST00000475243 SMG1Q96Q15 3661 aaKnown RBP5.76□□□□□ -1.49
VAPB-204ENST00000475243 SPENQ96T58 3664 aaKnown RBP5.76□□□□□ -1.49
VAPB-204ENST00000475243 H0YAA0 97 aa5.75□□□□□ -1.49
VAPB-204ENST00000475243 SVEP1Q4LDE5 3571 aa5.73□□□□□ -1.49
VAPB-204ENST00000475243 PP632Q6XCG6 107 aa5.69□□□□□ -1.5
VAPB-204ENST00000475243 TPRXLQ17RH7 258 aa5.68□□□□□ -1.5
VAPB-204ENST00000475243 P0C880 135 aa5.66□□□□□ -1.5
VAPB-204ENST00000475243 PRO2289Q9P1D8 64 aa5.61□□□□□ -1.51
VAPB-204ENST00000475243 KRTAP13-3Q3SY46 172 aa5.61□□□□□ -1.51
VAPB-204ENST00000475243 MUC3AQ02505 3323 aa5.59□□□□□ -1.51
VAPB-204ENST00000475243 CSMD2Q7Z408 3487 aa5.54□□□□□ -1.52
VAPB-204ENST00000475243 FBN1P35555 2871 aaKnown RBP5.53□□□□□ -1.52
VAPB-204ENST00000475243 SRRM2Q9UQ35 2752 aaKnown RBP5.51□□□□□ -1.53
VAPB-204ENST00000475243 COL7A1Q02388 2944 aa5.47□□□□□ -1.53
VAPB-204ENST00000475243 KRTAP12-2P59991 146 aa5.45□□□□□ -1.54
VAPB-204ENST00000475243 TRRAPQ9Y4A5 3859 aa5.44□□□□□ -1.54
VAPB-204ENST00000475243 FBN3Q75N90 2809 aa5.4□□□□□ -1.55
VAPB-204ENST00000475243 MEGF8Q7Z7M0 2845 aa5.4□□□□□ -1.55
VAPB-204ENST00000475243 VPS13CQ709C8 3753 aa5.37□□□□□ -1.55
VAPB-204ENST00000475243 BSNQ9UPA5 3926 aa5.33□□□□□ -1.56
VAPB-204ENST00000475243 KRTAP12-1P59990 96 aa5.29□□□□□ -1.56
VAPB-204ENST00000475243 KRTAP13-4Q3LI77 160 aa5.29□□□□□ -1.56
VAPB-204ENST00000475243 CSMD3Q7Z407 3707 aa5.28□□□□□ -1.56
VAPB-204ENST00000475243 OTOGQ6ZRI0 2925 aa5.26□□□□□ -1.57
VAPB-204ENST00000475243 KRTAP3-1Q9BYR8 98 aa5.22□□□□□ -1.57
VAPB-204ENST00000475243 ANK3Q12955 4377 aaKnown RBP5.21□□□□□ -1.58
VAPB-204ENST00000475243 KRTAP15-1Q3LI76 137 aa5.2□□□□□ -1.58
VAPB-204ENST00000475243 CRCT1Q9UGL9 99 aa5.06□□□□□ -1.6
VAPB-204ENST00000475243 KRTAP10-6P60371 365 aaPredicted RBP5.06□□□□□ -1.6
VAPB-204ENST00000475243 ZNF469Q96JG9 3925 aaPredicted RBP5.01□□□□□ -1.61
VAPB-204ENST00000475243 HUWE1Q7Z6Z7 4374 aaKnown RBP5.01□□□□□ -1.61
VAPB-204ENST00000475243 AKAP9Q99996 3911 aa4.96□□□□□ -1.62
VAPB-204ENST00000475243 MT1HL1P0DM35 61 aa4.95□□□□□ -1.62
VAPB-204ENST00000475243 KRTAP4-5Q9BYR2 181 aa4.93□□□□□ -1.62
VAPB-204ENST00000475243 KRTAP10-12P60413 245 aa4.92□□□□□ -1.62
VAPB-204ENST00000475243 KRTAP3-3Q9BYR6 98 aa4.88□□□□□ -1.63
VAPB-204ENST00000475243 KRTAP3-2Q9BYR7 98 aa4.85□□□□□ -1.63
VAPB-204ENST00000475243 KRTAP12-3P60328 96 aa4.76□□□□□ -1.65
VAPB-204ENST00000475243 LCE3AQ5TA76 89 aa4.74□□□□□ -1.65
VAPB-204ENST00000475243 INE1O15225 51 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 3172.9 ms