RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ORMDL1Q9P0S3 153 aa7.65□□□□□ -1.18
UPF3A-204ENST00000475218 H3BQ85 93 aa7.63□□□□□ -1.19
UPF3A-204ENST00000475218 PCOTHQ58A44 107 aa7.63□□□□□ -1.19
UPF3A-204ENST00000475218 LINC00575Q6W349 94 aa7.63□□□□□ -1.19
UPF3A-204ENST00000475218 TMEM256-PLSCR3K7ERE1 68 aa7.61□□□□□ -1.19
UPF3A-204ENST00000475218 CCKP06307 115 aa7.6□□□□□ -1.19
UPF3A-204ENST00000475218 SMIM20Q8N5G0 67 aa7.6□□□□□ -1.19
UPF3A-204ENST00000475218 RPS28P62857 69 aaKnown RBP7.59□□□□□ -1.2
UPF3A-204ENST00000475218 Q6ZQY7 126 aa7.59□□□□□ -1.2
UPF3A-204ENST00000475218 C14orf132Q9NPU4 83 aa7.59□□□□□ -1.2
UPF3A-204ENST00000475218 SERP2Q8N6R1 65 aa7.58□□□□□ -1.2
UPF3A-204ENST00000475218 IGLV8-61A0A075B6I0 122 aa7.57□□□□□ -1.2
UPF3A-204ENST00000475218 LINC00846Q9NV44 126 aa7.56□□□□□ -1.2
UPF3A-204ENST00000475218 hADV29S1A0JD25 119 aa7.56□□□□□ -1.2
UPF3A-204ENST00000475218 GHRHP01286 108 aa7.56□□□□□ -1.2
UPF3A-204ENST00000475218 PDE6GP18545 87 aa7.55□□□□□ -1.2
UPF3A-204ENST00000475218 J3KT08 172 aa7.54□□□□□ -1.2
UPF3A-204ENST00000475218 TMEM258P61165 79 aa7.54□□□□□ -1.2
UPF3A-204ENST00000475218 IGFL1Q6UW32 110 aa7.54□□□□□ -1.2
UPF3A-204ENST00000475218 MT1HP80294 61 aa7.54□□□□□ -1.2
UPF3A-204ENST00000475218 RPL37P61927 97 aaKnown RBP7.52□□□□□ -1.21
UPF3A-204ENST00000475218 UBL5Q9BZL1 73 aa7.52□□□□□ -1.21
UPF3A-204ENST00000475218 KRTAP9-6A0A140TA67 174 aa7.51□□□□□ -1.21
UPF3A-204ENST00000475218 F8WEM9 126 aa7.51□□□□□ -1.21
UPF3A-204ENST00000475218 LOC110117498A0A087WWA1 95 aa7.51□□□□□ -1.21
UPF3A-204ENST00000475218 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-204ENST00000475218 IGKV3D-7A0A0C4DH55 119 aa7.5□□□□□ -1.21
UPF3A-204ENST00000475218 RBM3P98179 157 aaKnown RBP7.48□□□□□ -1.21
UPF3A-204ENST00000475218 FLGP20930 4061 aaPredicted RBP7.45□□□□□ -1.22
UPF3A-204ENST00000475218 Q6ZQT0 140 aa7.44□□□□□ -1.22
UPF3A-204ENST00000475218 CXCL6P80162 114 aa7.43□□□□□ -1.22
UPF3A-204ENST00000475218 DSCR8Q96T75 97 aa7.43□□□□□ -1.22
UPF3A-204ENST00000475218 A0A087WVE0 104 aa7.41□□□□□ -1.22
UPF3A-204ENST00000475218 TRAV7A0A075B6U4 112 aa7.41□□□□□ -1.22
UPF3A-204ENST00000475218 LORP23490 312 aaPredicted RBP7.41□□□□□ -1.22
UPF3A-204ENST00000475218 C5orf47Q569G3 176 aa7.39□□□□□ -1.23
UPF3A-204ENST00000475218 FSIP2Q5CZC0 6907 aa7.39□□□□□ -1.23
UPF3A-204ENST00000475218 KRTAP10-6P60371 365 aaPredicted RBP7.38□□□□□ -1.23
UPF3A-204ENST00000475218 Q75L30 129 aa7.37□□□□□ -1.23
UPF3A-204ENST00000475218 SEC61GP60059 68 aa7.36□□□□□ -1.23
UPF3A-204ENST00000475218 TRBV7-4A0A0J9YYF1 115 aa7.36□□□□□ -1.23
UPF3A-204ENST00000475218 NDUFC1O43677 76 aa7.36□□□□□ -1.23
UPF3A-204ENST00000475218 Q6ZVQ6 151 aa7.36□□□□□ -1.23
UPF3A-204ENST00000475218 Q96NJ1 140 aa7.36□□□□□ -1.23
UPF3A-204ENST00000475218 A0A1B0GW54 56 aa7.34□□□□□ -1.23
UPF3A-204ENST00000475218 KLKP1Q107X0 134 aa7.34□□□□□ -1.23
UPF3A-204ENST00000475218 ATP5EP56381 51 aaPredicted RBP7.33□□□□□ -1.24
UPF3A-204ENST00000475218 CYSTM1Q9H1C7 97 aa7.33□□□□□ -1.24
UPF3A-204ENST00000475218 A0A087WSZ3 146 aa7.32□□□□□ -1.24
UPF3A-204ENST00000475218 A0A1W2PNM2 257 aa7.32□□□□□ -1.24
UPF3A-204ENST00000475218 CRCT1Q9UGL9 99 aa7.32□□□□□ -1.24
UPF3A-204ENST00000475218 FAM236DA0A1B0GTK5 79 aa7.31□□□□□ -1.24
UPF3A-204ENST00000475218 FAM236CP0DP71 79 aa7.31□□□□□ -1.24
UPF3A-204ENST00000475218 COX6B2Q6YFQ2 88 aa7.31□□□□□ -1.24
UPF3A-204ENST00000475218 C20orf197Q8N268 126 aa7.31□□□□□ -1.24
UPF3A-204ENST00000475218 C20orf166-AS1Q96NR2 134 aa7.31□□□□□ -1.24
UPF3A-204ENST00000475218 SERP1Q9Y6X1 66 aa7.31□□□□□ -1.24
UPF3A-204ENST00000475218 ATP11AUNQ6ZP68 121 aa7.29□□□□□ -1.24
UPF3A-204ENST00000475218 A8MUU9 505 aa7.28□□□□□ -1.24
UPF3A-204ENST00000475218 H7BZZ5 65 aa7.28□□□□□ -1.24
UPF3A-204ENST00000475218 M0R2T5 61 aa7.27□□□□□ -1.25
UPF3A-204ENST00000475218 DSCR10P59022 87 aa7.25□□□□□ -1.25
UPF3A-204ENST00000475218 KRTAP16-1A8MUX0 517 aa7.23□□□□□ -1.25
UPF3A-204ENST00000475218 NREPQ16612 68 aa7.21□□□□□ -1.25
UPF3A-204ENST00000475218 SMIM26A0A096LP01 95 aa7.2□□□□□ -1.26
UPF3A-204ENST00000475218 BPY2O14599 106 aa7.2□□□□□ -1.26
UPF3A-204ENST00000475218 NOTCH2NLQ7Z3S9 236 aa7.2□□□□□ -1.26
UPF3A-204ENST00000475218 LINC00472Q9H8W2 130 aa7.18□□□□□ -1.26
UPF3A-204ENST00000475218 IGKV4-1P06312 121 aa7.18□□□□□ -1.26
UPF3A-204ENST00000475218 DEFB116Q30KQ4 102 aa7.18□□□□□ -1.26
UPF3A-204ENST00000475218 TMEM254Q8TBM7 123 aa7.18□□□□□ -1.26
UPF3A-204ENST00000475218 LINC00313P59037 77 aa7.15□□□□□ -1.26
UPF3A-204ENST00000475218 OCR1Q9BZK8 76 aa7.15□□□□□ -1.26
UPF3A-204ENST00000475218 KRTAP9-8Q9BYQ0 159 aa7.15□□□□□ -1.27
UPF3A-204ENST00000475218 C4orf26Q17RF5 130 aa7.14□□□□□ -1.27
UPF3A-204ENST00000475218 SNURFQ9Y675 71 aa7.14□□□□□ -1.27
UPF3A-204ENST00000475218 MPLKIPQ8TAP9 179 aa7.1□□□□□ -1.27
UPF3A-204ENST00000475218 HRES1P13985 223 aa7.09□□□□□ -1.27
UPF3A-204ENST00000475218 IGHV6-1A0A0B4J1U7 121 aa7.08□□□□□ -1.28
UPF3A-204ENST00000475218 PRO0628Q9UI54 55 aa7.08□□□□□ -1.28
UPF3A-204ENST00000475218 USH2AO75445 5202 aa7.07□□□□□ -1.28
UPF3A-204ENST00000475218 A0A1B0GVX0 72 aa7.05□□□□□ -1.28
UPF3A-204ENST00000475218 V9GYY9 64 aa7.05□□□□□ -1.28
UPF3A-204ENST00000475218 Q8N9L7 120 aa7.04□□□□□ -1.28
UPF3A-204ENST00000475218 C8orf87E5RJ46 101 aa7.02□□□□□ -1.29
UPF3A-204ENST00000475218 MT2AP02795 61 aa7.02□□□□□ -1.29
UPF3A-204ENST00000475218 NDUFB1O75438 58 aa7.01□□□□□ -1.29
UPF3A-204ENST00000475218 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
UPF3A-204ENST00000475218 ZCCHC13Q8WW36 166 aaKnown RBP7□□□□□ -1.29
UPF3A-204ENST00000475218 HCG22E2RYF7 251 aa6.97□□□□□ -1.29
UPF3A-204ENST00000475218 MT1FP04733 61 aa6.97□□□□□ -1.29
UPF3A-204ENST00000475218 H3BPC8 53 aa6.97□□□□□ -1.29
UPF3A-204ENST00000475218 CYP4F30PQ9H0H9 118 aa6.97□□□□□ -1.29
UPF3A-204ENST00000475218 RBM12B-AS1Q9P1G2 102 aa6.96□□□□□ -1.3
UPF3A-204ENST00000475218 Q8N9P0 234 aaPredicted RBP6.95□□□□□ -1.3
UPF3A-204ENST00000475218 hDV103S1A0JD37 113 aa6.95□□□□□ -1.3
UPF3A-204ENST00000475218 K7EQZ3 153 aa6.93□□□□□ -1.3
UPF3A-204ENST00000475218 MP68P56378 58 aa6.93□□□□□ -1.3
UPF3A-204ENST00000475218 LCE2BO14633 110 aa6.92□□□□□ -1.3
UPF3A-204ENST00000475218 SPINK7P58062 85 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms