RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 NOTCH2NLQ7Z3S9 236 aa3.78□□□□□ -1.8
LIMD1-204ENST00000474665 A0A1B0GW54 56 aa3.77□□□□□ -1.81
LIMD1-204ENST00000474665 F8W1H4 67 aa3.77□□□□□ -1.81
LIMD1-204ENST00000474665 ETDBQ3ZM63 59 aa3.77□□□□□ -1.81
LIMD1-204ENST00000474665 KRTAP4-1Q9BYQ7 146 aa3.77□□□□□ -1.81
LIMD1-204ENST00000474665 IGKV4-1P06312 121 aa3.76□□□□□ -1.81
LIMD1-204ENST00000474665 SSPOA2VEC9 5147 aa3.76□□□□□ -1.81
LIMD1-204ENST00000474665 KRTAP16-1A8MUX0 517 aa3.74□□□□□ -1.81
LIMD1-204ENST00000474665 DSCR10P59022 87 aa3.74□□□□□ -1.81
LIMD1-204ENST00000474665 SIGMAR1Q99720 223 aa3.74□□□□□ -1.81
LIMD1-204ENST00000474665 C21orf62-AS1Q17RA5 79 aa3.73□□□□□ -1.81
LIMD1-204ENST00000474665 IGKV3D-7A0A0C4DH55 119 aa3.72□□□□□ -1.81
LIMD1-204ENST00000474665 RPL37P61927 97 aaKnown RBP3.72□□□□□ -1.81
LIMD1-204ENST00000474665 NREPQ16612 68 aa3.72□□□□□ -1.81
LIMD1-204ENST00000474665 PCOTHQ58A44 107 aa3.72□□□□□ -1.81
LIMD1-204ENST00000474665 LINC00846Q9NV44 126 aa3.72□□□□□ -1.81
LIMD1-204ENST00000474665 SYNE2Q8WXH0 6885 aaKnown RBP3.72□□□□□ -1.81
LIMD1-204ENST00000474665 USH2AO75445 5202 aa3.72□□□□□ -1.81
LIMD1-204ENST00000474665 IGHV6-1A0A0B4J1U7 121 aa3.71□□□□□ -1.82
LIMD1-204ENST00000474665 A0A1B0GVX0 72 aa3.71□□□□□ -1.82
LIMD1-204ENST00000474665 A8MUU9 505 aa3.71□□□□□ -1.82
LIMD1-204ENST00000474665 Q6ZVQ6 151 aa3.71□□□□□ -1.82
LIMD1-204ENST00000474665 C20orf166-AS1Q96NR2 134 aa3.71□□□□□ -1.82
LIMD1-204ENST00000474665 FCGBPQ9Y6R7 5405 aaPredicted RBP3.71□□□□□ -1.82
LIMD1-204ENST00000474665 A8MWP4 228 aa3.7□□□□□ -1.82
LIMD1-204ENST00000474665 J3KT08 172 aa3.7□□□□□ -1.82
LIMD1-204ENST00000474665 LORP23490 312 aaPredicted RBP3.7□□□□□ -1.82
LIMD1-204ENST00000474665 LINC00313P59037 77 aa3.7□□□□□ -1.82
LIMD1-204ENST00000474665 SEC61BP60468 96 aaKnown RBP3.7□□□□□ -1.82
LIMD1-204ENST00000474665 Q75L30 129 aa3.7□□□□□ -1.82
LIMD1-204ENST00000474665 J3QR89 54 aa3.69□□□□□ -1.82
LIMD1-204ENST00000474665 LCE2CQ5TA81 110 aa3.69□□□□□ -1.82
LIMD1-204ENST00000474665 PRR15Q8IV56 129 aa3.69□□□□□ -1.82
LIMD1-204ENST00000474665 K7EQZ3 153 aa3.68□□□□□ -1.82
LIMD1-204ENST00000474665 KRTAP10-6P60371 365 aaPredicted RBP3.68□□□□□ -1.82
LIMD1-204ENST00000474665 C8orf17Q9NRJ1 99 aa3.68□□□□□ -1.82
LIMD1-204ENST00000474665 C8orf87E5RJ46 101 aa3.67□□□□□ -1.82
LIMD1-204ENST00000474665 MT1HP80294 61 aa3.67□□□□□ -1.82
LIMD1-204ENST00000474665 KRTAP19-2Q3LHN2 52 aa3.67□□□□□ -1.82
LIMD1-204ENST00000474665 Q8N9L7 120 aa3.67□□□□□ -1.82
LIMD1-204ENST00000474665 MMP24-AS1A0A0U1RRL7 71 aa3.66□□□□□ -1.82
LIMD1-204ENST00000474665 K7ERU9 68 aa3.66□□□□□ -1.82
LIMD1-204ENST00000474665 BPY2O14599 106 aa3.66□□□□□ -1.82
LIMD1-204ENST00000474665 FAM240AA0A1B0GVK7 77 aa3.65□□□□□ -1.83
LIMD1-204ENST00000474665 NDUFB1O75438 58 aa3.65□□□□□ -1.83
LIMD1-204ENST00000474665 Q8N9P0 234 aaPredicted RBP3.65□□□□□ -1.83
LIMD1-204ENST00000474665 UBL5Q9BZL1 73 aa3.65□□□□□ -1.83
LIMD1-204ENST00000474665 FLGP20930 4061 aaPredicted RBP3.64□□□□□ -1.83
LIMD1-204ENST00000474665 ATP11AUNQ6ZP68 121 aa3.63□□□□□ -1.83
LIMD1-204ENST00000474665 ACYP1P07311 99 aa3.62□□□□□ -1.83
LIMD1-204ENST00000474665 hDV103S1A0JD37 113 aa3.61□□□□□ -1.83
LIMD1-204ENST00000474665 CXCL6P80162 114 aa3.61□□□□□ -1.83
LIMD1-204ENST00000474665 TMEM254Q8TBM7 123 aa3.61□□□□□ -1.83
LIMD1-204ENST00000474665 MACF1Q9UPN3 7388 aaKnown RBP3.61□□□□□ -1.83
LIMD1-204ENST00000474665 WFDC13Q8IUB5 93 aa3.6□□□□□ -1.83
LIMD1-204ENST00000474665 ZCCHC13Q8WW36 166 aaKnown RBP3.6□□□□□ -1.83
LIMD1-204ENST00000474665 MRPL34Q9BQ48 92 aaKnown RBP3.6□□□□□ -1.83
LIMD1-204ENST00000474665 Q5W150 140 aa3.59□□□□□ -1.83
LIMD1-204ENST00000474665 KRTAP19-1Q8IUB9 90 aa3.59□□□□□ -1.83
LIMD1-204ENST00000474665 CASC2Q6XLA1 102 aa3.58□□□□□ -1.84
LIMD1-204ENST00000474665 HCG22E2RYF7 251 aa3.57□□□□□ -1.84
LIMD1-204ENST00000474665 MPLKIPQ8TAP9 179 aa3.57□□□□□ -1.84
LIMD1-204ENST00000474665 HRES1P13985 223 aa3.56□□□□□ -1.84
LIMD1-204ENST00000474665 KRTAP20-1Q3LI63 56 aa3.56□□□□□ -1.84
LIMD1-204ENST00000474665 ATP5EP2Q5VTU8 51 aa3.56□□□□□ -1.84
LIMD1-204ENST00000474665 LINC00643Q86TS7 51 aa3.56□□□□□ -1.84
LIMD1-204ENST00000474665 M0R2T5 61 aa3.55□□□□□ -1.84
LIMD1-204ENST00000474665 KRTAP6-3Q3LI67 103 aa3.55□□□□□ -1.84
LIMD1-204ENST00000474665 SPINK7P58062 85 aa3.54□□□□□ -1.84
LIMD1-204ENST00000474665 A0A087WVE0 104 aa3.53□□□□□ -1.84
LIMD1-204ENST00000474665 NDUFS5O43920 106 aa3.53□□□□□ -1.84
LIMD1-204ENST00000474665 NEBP20929 6669 aa3.52□□□□□ -1.85
LIMD1-204ENST00000474665 IMUPQ9GZP8 106 aa3.52□□□□□ -1.85
LIMD1-204ENST00000474665 HIST1H4AP62805 103 aaKnown RBP3.51□□□□□ -1.85
LIMD1-204ENST00000474665 MT-ATP8P03928 68 aa3.49□□□□□ -1.85
LIMD1-204ENST00000474665 IGKV2D-30A0A075B6S6 120 aa3.48□□□□□ -1.85
LIMD1-204ENST00000474665 IGKV2-30P06310 120 aa3.48□□□□□ -1.85
LIMD1-204ENST00000474665 SCGB1A1P11684 91 aa3.48□□□□□ -1.85
LIMD1-204ENST00000474665 COX6B2Q6YFQ2 88 aa3.48□□□□□ -1.85
LIMD1-204ENST00000474665 TP53AIP1Q9HCN2 124 aa3.47□□□□□ -1.85
LIMD1-204ENST00000474665 OCR1Q9BZK8 76 aa3.46□□□□□ -1.86
LIMD1-204ENST00000474665 C7orf65Q6ZTY9 151 aa3.45□□□□□ -1.86
LIMD1-204ENST00000474665 KRTAP3-1Q9BYR8 98 aa3.44□□□□□ -1.86
LIMD1-204ENST00000474665 RBM12B-AS1Q9P1G2 102 aa3.44□□□□□ -1.86
LIMD1-204ENST00000474665 TRAV22A0A0B4J277 110 aa3.43□□□□□ -1.86
LIMD1-204ENST00000474665 UQCRQO14949 82 aa3.43□□□□□ -1.86
LIMD1-204ENST00000474665 CYP4F30PQ9H0H9 118 aa3.43□□□□□ -1.86
LIMD1-204ENST00000474665 FAM236DA0A1B0GTK5 79 aa3.42□□□□□ -1.86
LIMD1-204ENST00000474665 LCE2BO14633 110 aa3.42□□□□□ -1.86
LIMD1-204ENST00000474665 FAM236CP0DP71 79 aa3.42□□□□□ -1.86
LIMD1-204ENST00000474665 C4orf26Q17RF5 130 aa3.42□□□□□ -1.86
LIMD1-204ENST00000474665 MUC12Q9UKN1 5478 aa3.42□□□□□ -1.86
LIMD1-204ENST00000474665 H0Y9P7 68 aa3.41□□□□□ -1.86
LIMD1-204ENST00000474665 SMIM20Q8N5G0 67 aa3.4□□□□□ -1.87
LIMD1-204ENST00000474665 KRTAP9-8Q9BYQ0 159 aa3.4□□□□□ -1.87
LIMD1-204ENST00000474665 LOC101927531A0A1B0GV80 90 aa3.39□□□□□ -1.87
LIMD1-204ENST00000474665 H1FX-AS1Q4G0G2 97 aa3.39□□□□□ -1.87
LIMD1-204ENST00000474665 FAM236AA0A1B0GUQ0 79 aa3.38□□□□□ -1.87
LIMD1-204ENST00000474665 FAM236BA0A1B0GV22 79 aa3.38□□□□□ -1.87
LIMD1-204ENST00000474665 ATOX1O00244 68 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms