RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 LINC00472Q9H8W2 130 aa6.26□□□□□ -1.41
CUX1-207ENST00000465461 DSCR10P59022 87 aa6.25□□□□□ -1.41
CUX1-207ENST00000465461 RPL37P61927 97 aaKnown RBP6.25□□□□□ -1.41
CUX1-207ENST00000465461 LOC110117498A0A087WWA1 95 aa6.24□□□□□ -1.41
CUX1-207ENST00000465461 H3BT86 120 aa6.24□□□□□ -1.41
CUX1-207ENST00000465461 NOTCH2NLQ7Z3S9 236 aa6.22□□□□□ -1.41
CUX1-207ENST00000465461 K7EP34 96 aa6.2□□□□□ -1.42
CUX1-207ENST00000465461 KRTAP4-12Q9BQ66 201 aa6.2□□□□□ -1.42
CUX1-207ENST00000465461 IGHV6-1A0A0B4J1U7 121 aa6.19□□□□□ -1.42
CUX1-207ENST00000465461 PDE6GP18545 87 aa6.19□□□□□ -1.42
CUX1-207ENST00000465461 LINC00313P59037 77 aa6.19□□□□□ -1.42
CUX1-207ENST00000465461 A0A0U1RQV1 116 aa6.18□□□□□ -1.42
CUX1-207ENST00000465461 Q75L30 129 aa6.18□□□□□ -1.42
CUX1-207ENST00000465461 PRO0461Q9UI25 63 aa6.18□□□□□ -1.42
CUX1-207ENST00000465461 LCE3BQ5TA77 95 aa6.17□□□□□ -1.42
CUX1-207ENST00000465461 GTF2H5Q6ZYL4 71 aa6.17□□□□□ -1.42
CUX1-207ENST00000465461 KRTAP16-1A8MUX0 517 aa6.16□□□□□ -1.42
CUX1-207ENST00000465461 C20orf166-AS1Q96NR2 134 aa6.16□□□□□ -1.42
CUX1-207ENST00000465461 A0A1B0GVX0 72 aa6.15□□□□□ -1.42
CUX1-207ENST00000465461 A8MUU9 505 aa6.15□□□□□ -1.42
CUX1-207ENST00000465461 C21orf62-AS1Q17RA5 79 aa6.15□□□□□ -1.42
CUX1-207ENST00000465461 ATP11AUNQ6ZP68 121 aa6.15□□□□□ -1.42
CUX1-207ENST00000465461 NREPQ16612 68 aa6.14□□□□□ -1.43
CUX1-207ENST00000465461 FAT4Q6V0I7 4981 aa6.13□□□□□ -1.43
CUX1-207ENST00000465461 A0A1B0GW54 56 aa6.13□□□□□ -1.43
CUX1-207ENST00000465461 J3KT08 172 aa6.13□□□□□ -1.43
CUX1-207ENST00000465461 IGKV3D-7A0A0C4DH55 119 aa6.1□□□□□ -1.43
CUX1-207ENST00000465461 C8orf87E5RJ46 101 aa6.1□□□□□ -1.43
CUX1-207ENST00000465461 KRTAP19-2Q3LHN2 52 aa6.1□□□□□ -1.43
CUX1-207ENST00000465461 A8MWP4 228 aa6.09□□□□□ -1.43
CUX1-207ENST00000465461 NDUFB1O75438 58 aa6.09□□□□□ -1.43
CUX1-207ENST00000465461 A0A1B0GV90 55 aa6.07□□□□□ -1.44
CUX1-207ENST00000465461 F8W1H4 67 aa6.07□□□□□ -1.44
CUX1-207ENST00000465461 KRTAP9-9Q9BYP9 154 aa6.07□□□□□ -1.44
CUX1-207ENST00000465461 KRTAP9-4Q9BYQ2 154 aa6.07□□□□□ -1.44
CUX1-207ENST00000465461 C8orf17Q9NRJ1 99 aa6.07□□□□□ -1.44
CUX1-207ENST00000465461 ETDBQ3ZM63 59 aa6.06□□□□□ -1.44
CUX1-207ENST00000465461 Q6ZVQ6 151 aa6.06□□□□□ -1.44
CUX1-207ENST00000465461 K7EQZ3 153 aa6.05□□□□□ -1.44
CUX1-207ENST00000465461 KRTAP19-1Q8IUB9 90 aa6.05□□□□□ -1.44
CUX1-207ENST00000465461 PRR15Q8IV56 129 aa6.05□□□□□ -1.44
CUX1-207ENST00000465461 BPY2O14599 106 aa6.04□□□□□ -1.44
CUX1-207ENST00000465461 LINC00846Q9NV44 126 aa6.04□□□□□ -1.44
CUX1-207ENST00000465461 Q8N9L7 120 aa6.02□□□□□ -1.45
CUX1-207ENST00000465461 MMP24-AS1A0A0U1RRL7 71 aa6.01□□□□□ -1.45
CUX1-207ENST00000465461 MT1HP80294 61 aa6□□□□□ -1.45
CUX1-207ENST00000465461 COX6B2Q6YFQ2 88 aa6□□□□□ -1.45
CUX1-207ENST00000465461 Q8N9P0 234 aaPredicted RBP6□□□□□ -1.45
CUX1-207ENST00000465461 KRTAP4-8A0A0G2JLE6 195 aa5.99□□□□□ -1.45
CUX1-207ENST00000465461 ZCCHC13Q8WW36 166 aaKnown RBP5.98□□□□□ -1.45
CUX1-207ENST00000465461 UBL5Q9BZL1 73 aa5.98□□□□□ -1.45
CUX1-207ENST00000465461 hDV103S1A0JD37 113 aa5.97□□□□□ -1.45
CUX1-207ENST00000465461 MRPL34Q9BQ48 92 aaKnown RBP5.97□□□□□ -1.45
CUX1-207ENST00000465461 WFDC13Q8IUB5 93 aa5.96□□□□□ -1.46
CUX1-207ENST00000465461 TMEM254Q8TBM7 123 aa5.96□□□□□ -1.46
CUX1-207ENST00000465461 NDUFS5O43920 106 aa5.94□□□□□ -1.46
CUX1-207ENST00000465461 HRES1P13985 223 aa5.93□□□□□ -1.46
CUX1-207ENST00000465461 SPINK7P58062 85 aa5.91□□□□□ -1.46
CUX1-207ENST00000465461 CASC2Q6XLA1 102 aa5.91□□□□□ -1.46
CUX1-207ENST00000465461 M0R2T5 61 aa5.9□□□□□ -1.46
CUX1-207ENST00000465461 HCG22E2RYF7 251 aa5.88□□□□□ -1.47
CUX1-207ENST00000465461 Q5W150 140 aa5.88□□□□□ -1.47
CUX1-207ENST00000465461 FAM236DA0A1B0GTK5 79 aa5.87□□□□□ -1.47
CUX1-207ENST00000465461 FAM236CP0DP71 79 aa5.87□□□□□ -1.47
CUX1-207ENST00000465461 MPLKIPQ8TAP9 179 aa5.87□□□□□ -1.47
CUX1-207ENST00000465461 CXCL6P80162 114 aa5.86□□□□□ -1.47
CUX1-207ENST00000465461 RBM12B-AS1Q9P1G2 102 aa5.86□□□□□ -1.47
CUX1-207ENST00000465461 ACYP1P07311 99 aa5.85□□□□□ -1.47
CUX1-207ENST00000465461 KRTAP10-6P60371 365 aaPredicted RBP5.85□□□□□ -1.47
CUX1-207ENST00000465461 FAM240AA0A1B0GVK7 77 aa5.84□□□□□ -1.47
CUX1-207ENST00000465461 FLGP20930 4061 aaPredicted RBP5.83□□□□□ -1.48
CUX1-207ENST00000465461 IGKV2D-30A0A075B6S6 120 aa5.81□□□□□ -1.48
CUX1-207ENST00000465461 IGKV2-30P06310 120 aa5.81□□□□□ -1.48
CUX1-207ENST00000465461 LCE1DQ5T752 114 aa5.79□□□□□ -1.48
CUX1-207ENST00000465461 KRTAP4-7Q9BYR0 210 aa5.79□□□□□ -1.48
CUX1-207ENST00000465461 J3QR89 54 aa5.78□□□□□ -1.48
CUX1-207ENST00000465461 HIST1H4AP62805 103 aaKnown RBP5.77□□□□□ -1.49
CUX1-207ENST00000465461 ATP5EP2Q5VTU8 51 aa5.76□□□□□ -1.49
CUX1-207ENST00000465461 C7orf65Q6ZTY9 151 aa5.75□□□□□ -1.49
CUX1-207ENST00000465461 LINC00643Q86TS7 51 aa5.74□□□□□ -1.49
CUX1-207ENST00000465461 A0A087WVE0 104 aa5.73□□□□□ -1.49
CUX1-207ENST00000465461 TP53AIP1Q9HCN2 124 aa5.71□□□□□ -1.5
CUX1-207ENST00000465461 C4orf26Q17RF5 130 aa5.7□□□□□ -1.5
CUX1-207ENST00000465461 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
CUX1-207ENST00000465461 K7ERU9 68 aa5.67□□□□□ -1.5
CUX1-207ENST00000465461 H1FX-AS1Q4G0G2 97 aa5.67□□□□□ -1.5
CUX1-207ENST00000465461 MT2AP02795 61 aa5.64□□□□□ -1.51
CUX1-207ENST00000465461 KRTAP4-9Q9BYQ8 210 aa5.64□□□□□ -1.51
CUX1-207ENST00000465461 TRAV22A0A0B4J277 110 aa5.63□□□□□ -1.51
CUX1-207ENST00000465461 KRTAP3-1Q9BYR8 98 aa5.63□□□□□ -1.51
CUX1-207ENST00000465461 UQCRQO14949 82 aa5.62□□□□□ -1.51
CUX1-207ENST00000465461 CYP4F30PQ9H0H9 118 aa5.62□□□□□ -1.51
CUX1-207ENST00000465461 MT1FP04733 61 aa5.61□□□□□ -1.51
CUX1-207ENST00000465461 H0Y9P7 68 aa5.6□□□□□ -1.51
CUX1-207ENST00000465461 C1orf64Q8NEQ6 169 aa5.6□□□□□ -1.51
CUX1-207ENST00000465461 MT-ATP8P03928 68 aa5.59□□□□□ -1.51
CUX1-207ENST00000465461 LOC101927531A0A1B0GV80 90 aa5.57□□□□□ -1.52
CUX1-207ENST00000465461 KRTAP10-10P60014 251 aa5.57□□□□□ -1.52
CUX1-207ENST00000465461 OCR1Q9BZK8 76 aa5.56□□□□□ -1.52
CUX1-207ENST00000465461 FSIP2Q5CZC0 6907 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 206.2 ms