RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 H3BPC8 53 aa4.74□□□□□ -1.65
USP4-207ENST00000462673 K7EQZ3 153 aa4.74□□□□□ -1.65
USP4-207ENST00000462673 KRTAP10-4P60372 401 aaPredicted RBP4.74□□□□□ -1.65
USP4-207ENST00000462673 HSPG2P98160 4391 aa4.74□□□□□ -1.65
USP4-207ENST00000462673 KRTAP29-1A8MX34 341 aaPredicted RBP4.73□□□□□ -1.65
USP4-207ENST00000462673 KRTAP4-16G5E9R7 235 aaPredicted RBP4.73□□□□□ -1.65
USP4-207ENST00000462673 DSCR10P59022 87 aa4.73□□□□□ -1.65
USP4-207ENST00000462673 SEC61GP60059 68 aa4.73□□□□□ -1.65
USP4-207ENST00000462673 Q9BRP9 147 aa4.73□□□□□ -1.65
USP4-207ENST00000462673 KRTAP4-5Q9BYR2 181 aa4.73□□□□□ -1.65
USP4-207ENST00000462673 ZNF706Q9Y5V0 76 aaPredicted RBP4.73□□□□□ -1.65
USP4-207ENST00000462673 TRAV22A0A0B4J277 110 aa4.72□□□□□ -1.65
USP4-207ENST00000462673 SPANXA2-OT1Q8N9U9 137 aa4.72□□□□□ -1.65
USP4-207ENST00000462673 RYR1P21817 5038 aa4.72□□□□□ -1.65
USP4-207ENST00000462673 KRTAP11-1Q8IUC1 163 aa4.71□□□□□ -1.66
USP4-207ENST00000462673 SRRM2Q9UQ35 2752 aaKnown RBP4.71□□□□□ -1.66
USP4-207ENST00000462673 HERC2O95714 4834 aa4.71□□□□□ -1.66
USP4-207ENST00000462673 PMAIP1Q13794 54 aa4.7□□□□□ -1.66
USP4-207ENST00000462673 KRTAP17-1Q9BYP8 105 aa4.7□□□□□ -1.66
USP4-207ENST00000462673 ST20-AS1Q8NBB2 130 aa4.69□□□□□ -1.66
USP4-207ENST00000462673 IGLV8-61A0A075B6I0 122 aa4.68□□□□□ -1.66
USP4-207ENST00000462673 H0Y9P7 68 aa4.68□□□□□ -1.66
USP4-207ENST00000462673 PRLHP81277 87 aa4.68□□□□□ -1.66
USP4-207ENST00000462673 WFDC13Q8IUB5 93 aa4.68□□□□□ -1.66
USP4-207ENST00000462673 LINC00208Q96KT6 92 aa4.68□□□□□ -1.66
USP4-207ENST00000462673 LIMD2Q9BT23 127 aa4.68□□□□□ -1.66
USP4-207ENST00000462673 FAT1Q14517 4588 aa4.67□□□□□ -1.66
USP4-207ENST00000462673 PSPHP1O15172 72 aa4.67□□□□□ -1.66
USP4-207ENST00000462673 KRTAP13-1Q8IUC0 172 aa4.67□□□□□ -1.66
USP4-207ENST00000462673 PRR4Q16378 134 aa4.66□□□□□ -1.66
USP4-207ENST00000462673 IGFL1Q6UW32 110 aa4.66□□□□□ -1.66
USP4-207ENST00000462673 VPS13BQ7Z7G8 4022 aa4.65□□□□□ -1.67
USP4-207ENST00000462673 A8MUN3 132 aa4.65□□□□□ -1.67
USP4-207ENST00000462673 CD164Q04900 197 aa4.65□□□□□ -1.67
USP4-207ENST00000462673 Q5VV11 94 aa4.65□□□□□ -1.67
USP4-207ENST00000462673 CASC2Q6XLA1 102 aa4.65□□□□□ -1.67
USP4-207ENST00000462673 TYMSOSQ8TAI1 123 aa4.64□□□□□ -1.67
USP4-207ENST00000462673 A0A087WSZ3 146 aa4.63□□□□□ -1.67
USP4-207ENST00000462673 KRTAP10-8P60410 259 aa4.63□□□□□ -1.67
USP4-207ENST00000462673 Q75L30 129 aa4.63□□□□□ -1.67
USP4-207ENST00000462673 PRR15LQ9BU68 103 aa4.63□□□□□ -1.67
USP4-207ENST00000462673 A8MWP4 228 aa4.62□□□□□ -1.67
USP4-207ENST00000462673 KRTAP1-4P0C5Y4 121 aa4.62□□□□□ -1.67
USP4-207ENST00000462673 SPAG11AQ6PDA7 123 aa4.62□□□□□ -1.67
USP4-207ENST00000462673 KTN1-AS1Q86SY8 53 aa4.62□□□□□ -1.67
USP4-207ENST00000462673 PRR26Q8N8Z3 221 aa4.62□□□□□ -1.67
USP4-207ENST00000462673 PCLOQ9Y6V0 5065 aa4.62□□□□□ -1.67
USP4-207ENST00000462673 CHKB-CPT1BH3BT56 60 aa4.61□□□□□ -1.67
USP4-207ENST00000462673 SSBP3-AS1Q7Z2R9 100 aa4.61□□□□□ -1.67
USP4-207ENST00000462673 Q8N9P0 234 aaPredicted RBP4.61□□□□□ -1.67
USP4-207ENST00000462673 NDUFS5O43920 106 aa4.6□□□□□ -1.67
USP4-207ENST00000462673 SPRR1BP22528 89 aa4.6□□□□□ -1.67
USP4-207ENST00000462673 MOBPQ13875 183 aa4.6□□□□□ -1.67
USP4-207ENST00000462673 LINC00483Q53H64 154 aa4.6□□□□□ -1.67
USP4-207ENST00000462673 LOC101927531A0A1B0GV80 90 aa4.59□□□□□ -1.67
USP4-207ENST00000462673 COA5Q86WW8 74 aa4.59□□□□□ -1.67
USP4-207ENST00000462673 MMP24-AS1A0A0U1RRL7 71 aa4.58□□□□□ -1.68
USP4-207ENST00000462673 DEFB116Q30KQ4 102 aa4.58□□□□□ -1.68
USP4-207ENST00000462673 ATP11AUNQ6ZP68 121 aa4.58□□□□□ -1.68
USP4-207ENST00000462673 TP53AIP1Q9HCN2 124 aa4.58□□□□□ -1.68
USP4-207ENST00000462673 ANAPC11Q9NYG5 84 aa4.58□□□□□ -1.68
USP4-207ENST00000462673 ABCA13Q86UQ4 5058 aa4.57□□□□□ -1.68
USP4-207ENST00000462673 A0A087X002 238 aa4.57□□□□□ -1.68
USP4-207ENST00000462673 A6NED7 52 aa4.57□□□□□ -1.68
USP4-207ENST00000462673 MT1HL1P0DM35 61 aa4.57□□□□□ -1.68
USP4-207ENST00000462673 CDC42SE1Q9NRR8 79 aa4.57□□□□□ -1.68
USP4-207ENST00000462673 FLG2Q5D862 2391 aaPredicted RBP4.56□□□□□ -1.68
USP4-207ENST00000462673 IGLV7-46A0A075B6I9 117 aa4.56□□□□□ -1.68
USP4-207ENST00000462673 IGLV9-49A0A0B4J1Y8 123 aa4.56□□□□□ -1.68
USP4-207ENST00000462673 SPINK1P00995 79 aa4.56□□□□□ -1.68
USP4-207ENST00000462673 LINC00304Q8N9R0 145 aa4.56□□□□□ -1.68
USP4-207ENST00000462673 LINC00472Q9H8W2 130 aa4.56□□□□□ -1.68
USP4-207ENST00000462673 A0A0G2JQZ4 141 aa4.54□□□□□ -1.68
USP4-207ENST00000462673 LINC01558Q9Y6Z2 57 aa4.54□□□□□ -1.68
USP4-207ENST00000462673 KRTAP13-2Q52LG2 175 aa4.53□□□□□ -1.68
USP4-207ENST00000462673 XP32Q5T750 250 aa4.53□□□□□ -1.68
USP4-207ENST00000462673 C7orf65Q6ZTY9 151 aa4.53□□□□□ -1.68
USP4-207ENST00000462673 SPTSSBQ8NFR3 76 aa4.53□□□□□ -1.68
USP4-207ENST00000462673 A6NN06 94 aa4.52□□□□□ -1.69
USP4-207ENST00000462673 RPS29P62273 56 aaKnown RBP4.52□□□□□ -1.69
USP4-207ENST00000462673 DMBT1Q9UGM3 2413 aaPredicted RBP4.51□□□□□ -1.69
USP4-207ENST00000462673 MYCBP2O75592 4640 aa4.5□□□□□ -1.69
USP4-207ENST00000462673 A8MU10 97 aa4.5□□□□□ -1.69
USP4-207ENST00000462673 ASB16-AS1Q495Z4 193 aa4.5□□□□□ -1.69
USP4-207ENST00000462673 PCOTHQ58A44 107 aa4.5□□□□□ -1.69
USP4-207ENST00000462673 C8orf17Q9NRJ1 99 aa4.5□□□□□ -1.69
USP4-207ENST00000462673 RBM12B-AS1Q9P1G2 102 aa4.5□□□□□ -1.69
USP4-207ENST00000462673 LCA10Q71F78 164 aa4.49□□□□□ -1.69
USP4-207ENST00000462673 PKHD1L1Q86WI1 4243 aa4.49□□□□□ -1.69
USP4-207ENST00000462673 LRP1Q07954 4544 aaKnown RBP4.49□□□□□ -1.69
USP4-207ENST00000462673 A0A1B0GVX0 72 aa4.48□□□□□ -1.69
USP4-207ENST00000462673 Q96NJ1 140 aa4.47□□□□□ -1.69
USP4-207ENST00000462673 FAT3Q8TDW7 4589 aa4.47□□□□□ -1.69
USP4-207ENST00000462673 MRPL34Q9BQ48 92 aaKnown RBP4.46□□□□□ -1.7
USP4-207ENST00000462673 HRES1P13985 223 aa4.45□□□□□ -1.7
USP4-207ENST00000462673 IGHV6-1A0A0B4J1U7 121 aa4.43□□□□□ -1.7
USP4-207ENST00000462673 HERC1Q15751 4861 aa4.42□□□□□ -1.7
USP4-207ENST00000462673 SPINK7P58062 85 aa4.41□□□□□ -1.7
USP4-207ENST00000462673 KRTAP4-8Q9BYQ9 185 aa4.41□□□□□ -1.7
USP4-207ENST00000462673 TNXBP22105 4242 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms