RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 LCA10Q71F78 164 aa7.16□□□□□ -1.26
SMPD4-213ENST00000454468 A0A087X002 238 aa7.16□□□□□ -1.26
SMPD4-213ENST00000454468 NOTCH2NLQ7Z3S9 236 aa7.16□□□□□ -1.26
SMPD4-213ENST00000454468 KRTAP13-1Q8IUC0 172 aa7.16□□□□□ -1.26
SMPD4-213ENST00000454468 MMP24-AS1A0A0U1RRL7 71 aa7.16□□□□□ -1.26
SMPD4-213ENST00000454468 KRTAP10-1P60331 282 aa7.15□□□□□ -1.26
SMPD4-213ENST00000454468 DNAH3Q8TD57 4116 aa7.15□□□□□ -1.26
SMPD4-213ENST00000454468 A0A1B0GVX0 72 aa7.15□□□□□ -1.27
SMPD4-213ENST00000454468 STARD9Q9P2P6 4700 aa7.14□□□□□ -1.27
SMPD4-213ENST00000454468 SPAG11AQ6PDA7 123 aa7.14□□□□□ -1.27
SMPD4-213ENST00000454468 PLA2G1BP04054 148 aaKnown RBP7.13□□□□□ -1.27
SMPD4-213ENST00000454468 MRPL34Q9BQ48 92 aaKnown RBP7.12□□□□□ -1.27
SMPD4-213ENST00000454468 Q8N9P0 234 aaPredicted RBP7.11□□□□□ -1.27
SMPD4-213ENST00000454468 KRTAP29-1A8MX34 341 aaPredicted RBP7.11□□□□□ -1.27
SMPD4-213ENST00000454468 KMT2AQ03164 3969 aa7.09□□□□□ -1.27
SMPD4-213ENST00000454468 CYP4F30PQ9H0H9 118 aa7.08□□□□□ -1.28
SMPD4-213ENST00000454468 TYMSOSQ8TAI1 123 aa7.07□□□□□ -1.28
SMPD4-213ENST00000454468 IGKV2D-30A0A075B6S6 120 aa7.07□□□□□ -1.28
SMPD4-213ENST00000454468 LOC101927531A0A1B0GV80 90 aa7.07□□□□□ -1.28
SMPD4-213ENST00000454468 IGKV2-30P06310 120 aa7.07□□□□□ -1.28
SMPD4-213ENST00000454468 LINC00313P59037 77 aa7.07□□□□□ -1.28
SMPD4-213ENST00000454468 DMBT1Q9UGM3 2413 aaPredicted RBP7.06□□□□□ -1.28
SMPD4-213ENST00000454468 LINC00483Q53H64 154 aa7.06□□□□□ -1.28
SMPD4-213ENST00000454468 CDC42SE1Q9NRR8 79 aa7.06□□□□□ -1.28
SMPD4-213ENST00000454468 A6NN06 94 aa7.05□□□□□ -1.28
SMPD4-213ENST00000454468 COA5Q86WW8 74 aa7.05□□□□□ -1.28
SMPD4-213ENST00000454468 Q96NJ1 140 aa7.05□□□□□ -1.28
SMPD4-213ENST00000454468 TP53AIP1Q9HCN2 124 aa7.05□□□□□ -1.28
SMPD4-213ENST00000454468 ZCCHC13Q8WW36 166 aaKnown RBP7.05□□□□□ -1.28
SMPD4-213ENST00000454468 DNAH1Q9P2D7 4330 aa7.05□□□□□ -1.28
SMPD4-213ENST00000454468 FLG2Q5D862 2391 aaPredicted RBP7.04□□□□□ -1.28
SMPD4-213ENST00000454468 SSBP3-AS1Q7Z2R9 100 aa7.04□□□□□ -1.28
SMPD4-213ENST00000454468 PRR26Q8N8Z3 221 aa7.02□□□□□ -1.29
SMPD4-213ENST00000454468 LINC01554Q52M75 96 aa7.01□□□□□ -1.29
SMPD4-213ENST00000454468 Q75L30 129 aa7.01□□□□□ -1.29
SMPD4-213ENST00000454468 H3BPC8 53 aa7□□□□□ -1.29
SMPD4-213ENST00000454468 ADM2Q7Z4H4 148 aa6.99□□□□□ -1.29
SMPD4-213ENST00000454468 SPINK7P58062 85 aa6.99□□□□□ -1.29
SMPD4-213ENST00000454468 LCE6AA0A183 80 aa6.98□□□□□ -1.29
SMPD4-213ENST00000454468 SPINK1P00995 79 aa6.98□□□□□ -1.29
SMPD4-213ENST00000454468 Q5W150 140 aa6.98□□□□□ -1.29
SMPD4-213ENST00000454468 KRTAP13-2Q52LG2 175 aa6.97□□□□□ -1.29
SMPD4-213ENST00000454468 C9orf92A6NGG3 77 aa6.97□□□□□ -1.29
SMPD4-213ENST00000454468 DNAH11Q96DT5 4516 aa6.95□□□□□ -1.3
SMPD4-213ENST00000454468 FRAS1Q86XX4 4008 aa6.94□□□□□ -1.3
SMPD4-213ENST00000454468 VPS13DQ5THJ4 4388 aa6.91□□□□□ -1.3
SMPD4-213ENST00000454468 LINC00304Q8N9R0 145 aa6.9□□□□□ -1.3
SMPD4-213ENST00000454468 SPANXA2-OT1Q8N9U9 137 aa6.9□□□□□ -1.3
SMPD4-213ENST00000454468 IGLV7-46A0A075B6I9 117 aa6.9□□□□□ -1.3
SMPD4-213ENST00000454468 FAM229AH3BQW9 127 aa6.88□□□□□ -1.31
SMPD4-213ENST00000454468 DNAH2Q9P225 4427 aa6.88□□□□□ -1.31
SMPD4-213ENST00000454468 HRES1P13985 223 aa6.87□□□□□ -1.31
SMPD4-213ENST00000454468 DNAH6Q9C0G6 4158 aa6.86□□□□□ -1.31
SMPD4-213ENST00000454468 Q8N1X5 172 aa6.85□□□□□ -1.31
SMPD4-213ENST00000454468 ACYP2P14621 99 aa6.84□□□□□ -1.31
SMPD4-213ENST00000454468 LINC01558Q9Y6Z2 57 aa6.83□□□□□ -1.32
SMPD4-213ENST00000454468 DNAH8Q96JB1 4490 aa6.83□□□□□ -1.32
SMPD4-213ENST00000454468 DNAH17Q9UFH2 4485 aa6.83□□□□□ -1.32
SMPD4-213ENST00000454468 Q6ZSA8 131 aa6.83□□□□□ -1.32
SMPD4-213ENST00000454468 CSAG1Q6PB30 78 aa6.82□□□□□ -1.32
SMPD4-213ENST00000454468 KRTAP1-4P0C5Y4 121 aa6.82□□□□□ -1.32
SMPD4-213ENST00000454468 HECTD4Q9Y4D8 3996 aa6.81□□□□□ -1.32
SMPD4-213ENST00000454468 LRP1BQ9NZR2 4599 aa6.8□□□□□ -1.32
SMPD4-213ENST00000454468 HYDINQ4G0P3 5121 aa6.79□□□□□ -1.32
SMPD4-213ENST00000454468 ASB16-AS1Q495Z4 193 aa6.77□□□□□ -1.33
SMPD4-213ENST00000454468 A0A1B0GU69 56 aa6.76□□□□□ -1.33
SMPD4-213ENST00000454468 DYNC2H1Q8NCM8 4307 aaKnown RBP6.75□□□□□ -1.33
SMPD4-213ENST00000454468 MIR22HGQ0VDD5 57 aa6.7□□□□□ -1.34
SMPD4-213ENST00000454468 FAT1Q14517 4588 aa6.7□□□□□ -1.34
SMPD4-213ENST00000454468 DNAH5Q8TE73 4624 aa6.69□□□□□ -1.34
SMPD4-213ENST00000454468 PKHD1P08F94 4074 aa6.64□□□□□ -1.35
SMPD4-213ENST00000454468 UQCR11O14957 56 aa6.64□□□□□ -1.35
SMPD4-213ENST00000454468 VPS13BQ7Z7G8 4022 aa6.64□□□□□ -1.35
SMPD4-213ENST00000454468 DMAC1Q96GE9 116 aa6.63□□□□□ -1.35
SMPD4-213ENST00000454468 KRTAP16-1A8MUX0 517 aa6.62□□□□□ -1.35
SMPD4-213ENST00000454468 KRTAP13-3Q3SY46 172 aa6.62□□□□□ -1.35
SMPD4-213ENST00000454468 Q5VSD8 79 aa6.61□□□□□ -1.35
SMPD4-213ENST00000454468 KRTAP21-3Q3LHN1 58 aa6.59□□□□□ -1.35
SMPD4-213ENST00000454468 CRIPTQ9P021 101 aa6.58□□□□□ -1.36
SMPD4-213ENST00000454468 DYNC1H1Q14204 4646 aaKnown RBP6.56□□□□□ -1.36
SMPD4-213ENST00000454468 ALMS1Q8TCU4 4167 aa6.55□□□□□ -1.36
SMPD4-213ENST00000454468 A0A1B0GVY2 172 aa6.53□□□□□ -1.36
SMPD4-213ENST00000454468 FAT2Q9NYQ8 4349 aa6.5□□□□□ -1.37
SMPD4-213ENST00000454468 SPATA8Q6RVD6 105 aa6.5□□□□□ -1.37
SMPD4-213ENST00000454468 ROMO1P60602 79 aa6.49□□□□□ -1.37
SMPD4-213ENST00000454468 SACSQ9NZJ4 4579 aa6.49□□□□□ -1.37
SMPD4-213ENST00000454468 SPINT4Q6UDR6 99 aa6.48□□□□□ -1.37
SMPD4-213ENST00000454468 KMT2CQ8NEZ4 4911 aaKnown RBP6.47□□□□□ -1.37
SMPD4-213ENST00000454468 PKD1P98161 4303 aa6.45□□□□□ -1.38
SMPD4-213ENST00000454468 MYCBP2O75592 4640 aa6.43□□□□□ -1.38
SMPD4-213ENST00000454468 RPS29P62273 56 aaKnown RBP6.42□□□□□ -1.38
SMPD4-213ENST00000454468 A0A0A0MQY5 61 aa6.41□□□□□ -1.38
SMPD4-213ENST00000454468 LRP1Q07954 4544 aaKnown RBP6.41□□□□□ -1.38
SMPD4-213ENST00000454468 A8MUU9 505 aa6.41□□□□□ -1.38
SMPD4-213ENST00000454468 C20orf166-AS1Q96NR2 134 aa6.4□□□□□ -1.39
SMPD4-213ENST00000454468 KRTAP25-1Q3LHN0 102 aa6.39□□□□□ -1.39
SMPD4-213ENST00000454468 APOBP04114 4563 aaKnown RBP6.39□□□□□ -1.39
SMPD4-213ENST00000454468 KRTAP10-4P60372 401 aaPredicted RBP6.38□□□□□ -1.39
SMPD4-213ENST00000454468 A0A0D9SG42 100 aa6.38□□□□□ -1.39
SMPD4-213ENST00000454468 K7ERS5 55 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms