RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 H0Y9P7 68 aa3.48□□□□□ -1.85
VPS50-205ENST00000441602 Q5VSD8 79 aa3.48□□□□□ -1.85
VPS50-205ENST00000441602 A0A0U1RQV1 116 aa3.48□□□□□ -1.85
VPS50-205ENST00000441602 DNAH8Q96JB1 4490 aa3.47□□□□□ -1.85
VPS50-205ENST00000441602 TRAV22A0A0B4J277 110 aa3.47□□□□□ -1.85
VPS50-205ENST00000441602 FAM236DA0A1B0GTK5 79 aa3.47□□□□□ -1.85
VPS50-205ENST00000441602 FAM236CP0DP71 79 aa3.47□□□□□ -1.85
VPS50-205ENST00000441602 DNAH11Q96DT5 4516 aa3.46□□□□□ -1.86
VPS50-205ENST00000441602 KRTAP10-4P60372 401 aaPredicted RBP3.46□□□□□ -1.86
VPS50-205ENST00000441602 LINC00208Q96KT6 92 aa3.46□□□□□ -1.86
VPS50-205ENST00000441602 KMT2AQ03164 3969 aa3.45□□□□□ -1.86
VPS50-205ENST00000441602 H7BZZ5 65 aa3.44□□□□□ -1.86
VPS50-205ENST00000441602 C1orf64Q8NEQ6 169 aa3.44□□□□□ -1.86
VPS50-205ENST00000441602 LYSTQ99698 3801 aa3.44□□□□□ -1.86
VPS50-205ENST00000441602 Q8N1X5 172 aa3.43□□□□□ -1.86
VPS50-205ENST00000441602 LOC101927531A0A1B0GV80 90 aa3.43□□□□□ -1.86
VPS50-205ENST00000441602 ZCCHC13Q8WW36 166 aaKnown RBP3.42□□□□□ -1.86
VPS50-205ENST00000441602 HECTD4Q9Y4D8 3996 aa3.42□□□□□ -1.86
VPS50-205ENST00000441602 DNAH5Q8TE73 4624 aa3.42□□□□□ -1.86
VPS50-205ENST00000441602 SACSQ9NZJ4 4579 aa3.42□□□□□ -1.86
VPS50-205ENST00000441602 RPS28P62857 69 aaKnown RBP3.41□□□□□ -1.86
VPS50-205ENST00000441602 SERP1Q9Y6X1 66 aa3.41□□□□□ -1.86
VPS50-205ENST00000441602 CYSTM1Q9H1C7 97 aa3.41□□□□□ -1.86
VPS50-205ENST00000441602 NOTCH2NLQ7Z3S9 236 aa3.4□□□□□ -1.86
VPS50-205ENST00000441602 Q8N9P0 234 aaPredicted RBP3.4□□□□□ -1.86
VPS50-205ENST00000441602 FAT2Q9NYQ8 4349 aa3.4□□□□□ -1.87
VPS50-205ENST00000441602 DYNC1H1Q14204 4646 aaKnown RBP3.4□□□□□ -1.87
VPS50-205ENST00000441602 FP248Q71RG6 208 aaPredicted RBP3.4□□□□□ -1.87
VPS50-205ENST00000441602 FRAS1Q86XX4 4008 aa3.4□□□□□ -1.87
VPS50-205ENST00000441602 KRTAP10-8P60410 259 aa3.39□□□□□ -1.87
VPS50-205ENST00000441602 SPANXA2-OT1Q8N9U9 137 aa3.39□□□□□ -1.87
VPS50-205ENST00000441602 RYR2Q92736 4967 aa3.39□□□□□ -1.87
VPS50-205ENST00000441602 OXTP01178 125 aa3.39□□□□□ -1.87
VPS50-205ENST00000441602 HYDINQ4G0P3 5121 aa3.39□□□□□ -1.87
VPS50-205ENST00000441602 PKD1P98161 4303 aa3.37□□□□□ -1.87
VPS50-205ENST00000441602 KRTAP16-1A8MUX0 517 aa3.37□□□□□ -1.87
VPS50-205ENST00000441602 CYP4F30PQ9H0H9 118 aa3.37□□□□□ -1.87
VPS50-205ENST00000441602 LRP1BQ9NZR2 4599 aa3.36□□□□□ -1.87
VPS50-205ENST00000441602 PCOTHQ58A44 107 aa3.36□□□□□ -1.87
VPS50-205ENST00000441602 SRRM2Q9UQ35 2752 aaKnown RBP3.35□□□□□ -1.87
VPS50-205ENST00000441602 Q5W150 140 aa3.35□□□□□ -1.87
VPS50-205ENST00000441602 RETNLBQ9BQ08 111 aa3.35□□□□□ -1.87
VPS50-205ENST00000441602 SMIM26A0A096LP01 95 aa3.34□□□□□ -1.87
VPS50-205ENST00000441602 C9orf92A6NGG3 77 aa3.34□□□□□ -1.87
VPS50-205ENST00000441602 IGKV2-30P06310 120 aa3.34□□□□□ -1.87
VPS50-205ENST00000441602 SVIPQ8NHG7 77 aa3.34□□□□□ -1.87
VPS50-205ENST00000441602 IGLV7-46A0A075B6I9 117 aa3.34□□□□□ -1.87
VPS50-205ENST00000441602 A8MUU9 505 aa3.33□□□□□ -1.88
VPS50-205ENST00000441602 PRR4Q16378 134 aa3.33□□□□□ -1.88
VPS50-205ENST00000441602 C7orf65Q6ZTY9 151 aa3.33□□□□□ -1.88
VPS50-205ENST00000441602 C20orf166-AS1Q96NR2 134 aa3.33□□□□□ -1.88
VPS50-205ENST00000441602 IGKV2D-30A0A075B6S6 120 aa3.33□□□□□ -1.88
VPS50-205ENST00000441602 KRTAP13-3Q3SY46 172 aa3.33□□□□□ -1.88
VPS50-205ENST00000441602 Q75L30 129 aa3.31□□□□□ -1.88
VPS50-205ENST00000441602 ATP11AUNQ6ZP68 121 aa3.31□□□□□ -1.88
VPS50-205ENST00000441602 APOBP04114 4563 aaKnown RBP3.3□□□□□ -1.88
VPS50-205ENST00000441602 J3QL48 77 aa3.3□□□□□ -1.88
VPS50-205ENST00000441602 ACYP2P14621 99 aa3.3□□□□□ -1.88
VPS50-205ENST00000441602 V9GYY9 64 aa3.3□□□□□ -1.88
VPS50-205ENST00000441602 MT1HL1P0DM35 61 aa3.29□□□□□ -1.88
VPS50-205ENST00000441602 HRES1P13985 223 aa3.29□□□□□ -1.88
VPS50-205ENST00000441602 CHKB-CPT1BH3BT56 60 aa3.29□□□□□ -1.88
VPS50-205ENST00000441602 LORP23490 312 aaPredicted RBP3.28□□□□□ -1.88
VPS50-205ENST00000441602 COA5Q86WW8 74 aa3.28□□□□□ -1.88
VPS50-205ENST00000441602 FLG2Q5D862 2391 aaPredicted RBP3.28□□□□□ -1.88
VPS50-205ENST00000441602 A8MUN3 132 aa3.27□□□□□ -1.89
VPS50-205ENST00000441602 RPL37P61927 97 aaKnown RBP3.27□□□□□ -1.89
VPS50-205ENST00000441602 DMAC1Q96GE9 116 aa3.26□□□□□ -1.89
VPS50-205ENST00000441602 VPS13BQ7Z7G8 4022 aa3.26□□□□□ -1.89
VPS50-205ENST00000441602 PKHD1L1Q86WI1 4243 aa3.25□□□□□ -1.89
VPS50-205ENST00000441602 TPRXLQ17RH7 258 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 SPTSSBQ8NFR3 76 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 SPINK7P58062 85 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 LCE2CQ5TA81 110 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 KMT2CQ8NEZ4 4911 aaKnown RBP3.24□□□□□ -1.89
VPS50-205ENST00000441602 RYR1P21817 5038 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 PKHD1P08F94 4074 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 XP32Q5T750 250 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 KRTAP17-1Q9BYP8 105 aa3.24□□□□□ -1.89
VPS50-205ENST00000441602 DMBT1Q9UGM3 2413 aaPredicted RBP3.24□□□□□ -1.89
VPS50-205ENST00000441602 MPLKIPQ8TAP9 179 aa3.23□□□□□ -1.89
VPS50-205ENST00000441602 FAT1Q14517 4588 aa3.23□□□□□ -1.89
VPS50-205ENST00000441602 Q1T7F1 81 aa3.22□□□□□ -1.89
VPS50-205ENST00000441602 KRTAP4-5Q9BYR2 181 aa3.2□□□□□ -1.9
VPS50-205ENST00000441602 LOC100996750A0A140TA64 210 aa3.2□□□□□ -1.9
VPS50-205ENST00000441602 KRTAP4-6Q9BYQ5 205 aa3.2□□□□□ -1.9
VPS50-205ENST00000441602 C4orf26Q17RF5 130 aa3.2□□□□□ -1.9
VPS50-205ENST00000441602 PRR15LQ9BU68 103 aa3.2□□□□□ -1.9
VPS50-205ENST00000441602 HSPG2P98160 4391 aa3.19□□□□□ -1.9
VPS50-205ENST00000441602 SEC61BP60468 96 aaKnown RBP3.19□□□□□ -1.9
VPS50-205ENST00000441602 COX6B2Q6YFQ2 88 aa3.19□□□□□ -1.9
VPS50-205ENST00000441602 LINC01558Q9Y6Z2 57 aa3.18□□□□□ -1.9
VPS50-205ENST00000441602 RYR3Q15413 4870 aa3.17□□□□□ -1.9
VPS50-205ENST00000441602 KIAA1109Q2LD37 5005 aa3.16□□□□□ -1.9
VPS50-205ENST00000441602 SEC61GP60059 68 aa3.16□□□□□ -1.9
VPS50-205ENST00000441602 RBM12B-AS1Q9P1G2 102 aa3.16□□□□□ -1.9
VPS50-205ENST00000441602 PSPHP1O15172 72 aa3.15□□□□□ -1.91
VPS50-205ENST00000441602 A0A1B0GU69 56 aa3.14□□□□□ -1.91
VPS50-205ENST00000441602 FAT3Q8TDW7 4589 aa3.11□□□□□ -1.91
VPS50-205ENST00000441602 A6NED7 52 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms