RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 DEFB131AP59861 70 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 ANK2Q01484 3957 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 C1orf137Q5JT78 98 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 FAM74A4Q5TZK3 123 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 CSAG1Q6PB30 78 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 CUBNO60494 3623 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 NBEAL2Q6ZNJ1 2754 aa2.2□□□□□ -2.06
USP54-206ENST00000433394 CRIP1P50238 77 aa2.2□□□□□ -2.06
USP54-206ENST00000433394 AMELXQ99217 191 aa2.2□□□□□ -2.06
USP54-206ENST00000433394 UBE2D4Q9Y2X8 147 aa2.2□□□□□ -2.06
USP54-206ENST00000433394 TRRAPQ9Y4A5 3859 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 NUPR2A6NF83 97 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 IGHV3-30P01768 117 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 IGHV3-30-5P0DP03 117 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 Q6ZSA8 131 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 TMEM263Q8WUH6 116 aaKnown RBP2.19□□□□□ -2.06
USP54-206ENST00000433394 PRR15LQ9BU68 103 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 STAB2Q8WWQ8 2551 aa2.19□□□□□ -2.06
USP54-206ENST00000433394 A0A0J9YY99 117 aa2.18□□□□□ -2.06
USP54-206ENST00000433394 SPINK13Q1W4C9 94 aa2.18□□□□□ -2.06
USP54-206ENST00000433394 LINC00322Q6ZN03 302 aaPredicted RBP2.18□□□□□ -2.06
USP54-206ENST00000433394 TIMM8BQ9Y5J9 83 aaPredicted RBP2.18□□□□□ -2.06
USP54-206ENST00000433394 F8VRH5 84 aa2.17□□□□□ -2.06
USP54-206ENST00000433394 RNASE3P12724 160 aaKnown RBP2.17□□□□□ -2.06
USP54-206ENST00000433394 GDF5OSQ5U4N7 250 aa2.17□□□□□ -2.06
USP54-206ENST00000433394 KRTAP5-7Q6L8G8 165 aa2.17□□□□□ -2.06
USP54-206ENST00000433394 KRTAP26-1Q6PEX3 210 aa2.17□□□□□ -2.06
USP54-206ENST00000433394 TRBV6-4A0A1B0GX49 114 aa2.16□□□□□ -2.06
USP54-206ENST00000433394 LINC01546A6NGU7 62 aa2.16□□□□□ -2.06
USP54-206ENST00000433394 H3BNG1 76 aa2.16□□□□□ -2.06
USP54-206ENST00000433394 SPINK4O60575 86 aa2.16□□□□□ -2.06
USP54-206ENST00000433394 NDUFB1O75438 58 aa2.16□□□□□ -2.06
USP54-206ENST00000433394 FCER1GP30273 86 aa2.16□□□□□ -2.06
USP54-206ENST00000433394 SPART-AS1P0CW21 52 aa2.15□□□□□ -2.07
USP54-206ENST00000433394 CNBPP62633 177 aaKnown RBP2.15□□□□□ -2.07
USP54-206ENST00000433394 COX7B2Q8TF08 81 aa2.15□□□□□ -2.07
USP54-206ENST00000433394 TRGV1A0A0A0MS02 117 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 TRBV30A0A0K0K1B3 111 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 M0QY20 66 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 MGPP08493 103 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 DEFB1P60022 68 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 SMIM2Q9BVW6 85 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 PRO0255Q9UI72 69 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 DNAH3Q8TD57 4116 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 TENM3Q9P273 2699 aa2.14□□□□□ -2.07
USP54-206ENST00000433394 TRBV7-4A0A0J9YYF1 115 aa2.13□□□□□ -2.07
USP54-206ENST00000433394 JMJD7-PLA2G4BH0Y9G9 81 aa2.13□□□□□ -2.07
USP54-206ENST00000433394 I3L3M4 83 aa2.13□□□□□ -2.07
USP54-206ENST00000433394 UQCR11O14957 56 aa2.13□□□□□ -2.07
USP54-206ENST00000433394 HTN1P15515 57 aa2.13□□□□□ -2.07
USP54-206ENST00000433394 POLR2KP53803 58 aaKnown RBP2.13□□□□□ -2.07
USP54-206ENST00000433394 DEFB135Q30KP9 77 aa2.13□□□□□ -2.07
USP54-206ENST00000433394 NOP10Q9NPE3 64 aaKnown RBP2.13□□□□□ -2.07
USP54-206ENST00000433394 CMYA5Q8N3K9 4069 aa2.12□□□□□ -2.07
USP54-206ENST00000433394 A0A087WVE0 104 aa2.12□□□□□ -2.07
USP54-206ENST00000433394 PLNP26678 52 aa2.12□□□□□ -2.07
USP54-206ENST00000433394 WFDC10AQ9H1F0 79 aa2.12□□□□□ -2.07
USP54-206ENST00000433394 LINC01558Q9Y6Z2 57 aa2.12□□□□□ -2.07
USP54-206ENST00000433394 MEGF8Q7Z7M0 2845 aa2.12□□□□□ -2.07
USP54-206ENST00000433394 COL7A1Q02388 2944 aa2.11□□□□□ -2.07
USP54-206ENST00000433394 PDE6GP18545 87 aa2.11□□□□□ -2.07
USP54-206ENST00000433394 CCL18P55774 89 aa2.11□□□□□ -2.07
USP54-206ENST00000433394 UBL5Q9BZL1 73 aa2.11□□□□□ -2.07
USP54-206ENST00000433394 IGIPA6NJ69 53 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 K7EIL1 84 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 DEFB130BP0DP73 79 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 DEFB130AP0DP74 79 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 NREPQ16612 68 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 RPL39LQ96EH5 51 aaKnown RBP2.1□□□□□ -2.07
USP54-206ENST00000433394 LINC00846Q9NV44 126 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 TENM2Q9NT68 2774 aa2.1□□□□□ -2.07
USP54-206ENST00000433394 H0Y9P7 68 aa2.09□□□□□ -2.07
USP54-206ENST00000433394 COX17Q14061 63 aa2.09□□□□□ -2.07
USP54-206ENST00000433394 LELP1Q5T871 98 aa2.09□□□□□ -2.07
USP54-206ENST00000433394 LINC00208Q96KT6 92 aa2.09□□□□□ -2.07
USP54-206ENST00000433394 FBN3Q75N90 2809 aa2.09□□□□□ -2.07
USP54-206ENST00000433394 TGP01266 2768 aa2.09□□□□□ -2.08
USP54-206ENST00000433394 DEFB131BA0A096LNP1 70 aa2.08□□□□□ -2.08
USP54-206ENST00000433394 DNHD1Q96M86 4753 aa2.08□□□□□ -2.08
USP54-206ENST00000433394 RPL37AP61513 92 aaKnown RBP2.07□□□□□ -2.08
USP54-206ENST00000433394 LINC01556Q5JQF7 62 aa2.07□□□□□ -2.08
USP54-206ENST00000433394 PRKDCP78527 4128 aaKnown RBP2.06□□□□□ -2.08
USP54-206ENST00000433394 DNAH9Q9NYC9 4486 aa2.06□□□□□ -2.08
USP54-206ENST00000433394 A0A096LPF7 62 aa2.06□□□□□ -2.08
USP54-206ENST00000433394 RPL39P62891 51 aaKnown RBP2.06□□□□□ -2.08
USP54-206ENST00000433394 ENHOQ6UWT2 76 aa2.06□□□□□ -2.08
USP54-206ENST00000433394 HUWE1Q7Z6Z7 4374 aaKnown RBP2.05□□□□□ -2.08
USP54-206ENST00000433394 DEFB4AO15263 64 aa2.05□□□□□ -2.08
USP54-206ENST00000433394 HTN3P15516 51 aa2.05□□□□□ -2.08
USP54-206ENST00000433394 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.04□□□□□ -2.08
USP54-206ENST00000433394 LINC00959A0A1B0GUT2 108 aa2.04□□□□□ -2.08
USP54-206ENST00000433394 DNAH7Q8WXX0 4024 aa2.03□□□□□ -2.08
USP54-206ENST00000433394 LOC110117498A0A087WWA1 95 aa2.03□□□□□ -2.08
USP54-206ENST00000433394 NDUFA1O15239 70 aa2.03□□□□□ -2.08
USP54-206ENST00000433394 Q8IZM0 81 aa2.03□□□□□ -2.08
USP54-206ENST00000433394 SPRR4Q96PI1 79 aa2.03□□□□□ -2.08
USP54-206ENST00000433394 PLAC8Q9NZF1 115 aa2.03□□□□□ -2.08
USP54-206ENST00000433394 DYNC2H1Q8NCM8 4307 aaKnown RBP2.03□□□□□ -2.09
USP54-206ENST00000433394 GVQW2A0A096LPI5 108 aaPredicted RBP2.02□□□□□ -2.09
USP54-206ENST00000433394 ACYP2P14621 99 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 182.2 ms