RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 KRTAP10-8P60410 259 aa3.24□□□□□ -1.89
HERC4-206ENST00000427635 XIRP2A4UGR9 3374 aa3.24□□□□□ -1.89
HERC4-206ENST00000427635 VCANP13611 3396 aa3.23□□□□□ -1.89
HERC4-206ENST00000427635 KMT2BQ9UMN6 2715 aaPredicted RBP3.22□□□□□ -1.89
HERC4-206ENST00000427635 TACC2O95359 2948 aa3.21□□□□□ -1.9
HERC4-206ENST00000427635 CFAP47Q6ZTR5 3102 aa3.21□□□□□ -1.9
HERC4-206ENST00000427635 A0A1B0GVY2 172 aa3.21□□□□□ -1.9
HERC4-206ENST00000427635 ITPR1Q14643 2758 aa3.21□□□□□ -1.9
HERC4-206ENST00000427635 KRTAP10-10P60014 251 aa3.2□□□□□ -1.9
HERC4-206ENST00000427635 C10orf95Q9H7T3 257 aa3.2□□□□□ -1.9
HERC4-206ENST00000427635 USP34Q70CQ2 3546 aa3.2□□□□□ -1.9
HERC4-206ENST00000427635 COL12A1Q99715 3063 aa3.19□□□□□ -1.9
HERC4-206ENST00000427635 LAMA1P25391 3075 aa3.19□□□□□ -1.9
HERC4-206ENST00000427635 Q6ZRN7 208 aaPredicted RBP3.18□□□□□ -1.9
HERC4-206ENST00000427635 NIPBLQ6KC79 2804 aaeCLIP3.17□□□□□ -1.95e-6■■■■■ 32.2
HERC4-206ENST00000427635 DMXL2Q8TDJ6 3036 aa3.16□□□□□ -1.9
HERC4-206ENST00000427635 KRTAP13-2Q52LG2 175 aa3.15□□□□□ -1.91
HERC4-206ENST00000427635 PP632Q6XCG6 107 aa3.14□□□□□ -1.91
HERC4-206ENST00000427635 NBEAQ8NFP9 2946 aa3.14□□□□□ -1.91
HERC4-206ENST00000427635 VPS13AQ96RL7 3174 aa3.13□□□□□ -1.91
HERC4-206ENST00000427635 CDH23Q9H251 3354 aa3.13□□□□□ -1.91
HERC4-206ENST00000427635 TENM2Q9NT68 2774 aa3.12□□□□□ -1.91
HERC4-206ENST00000427635 TPRXLQ17RH7 258 aa3.12□□□□□ -1.91
HERC4-206ENST00000427635 EYSQ5T1H1 3165 aa3.12□□□□□ -1.91
HERC4-206ENST00000427635 KRTAP29-1A8MX34 341 aaPredicted RBP3.11□□□□□ -1.91
HERC4-206ENST00000427635 ATMQ13315 3056 aa3.11□□□□□ -1.91
HERC4-206ENST00000427635 APCP25054 2843 aa3.1□□□□□ -1.91
HERC4-206ENST00000427635 XP32Q5T750 250 aa3.1□□□□□ -1.91
HERC4-206ENST00000427635 DNAH14Q0VDD8 3507 aa3.1□□□□□ -1.91
HERC4-206ENST00000427635 BOD1L1Q8NFC6 3051 aa3.09□□□□□ -1.91
HERC4-206ENST00000427635 DMXL1Q9Y485 3027 aa3.09□□□□□ -1.92
HERC4-206ENST00000427635 KRTAP11-1Q8IUC1 163 aa3.08□□□□□ -1.92
HERC4-206ENST00000427635 KRTAP15-1Q3LI76 137 aa3.08□□□□□ -1.92
HERC4-206ENST00000427635 PKD1L1Q8TDX9 2849 aa3.08□□□□□ -1.92
HERC4-206ENST00000427635 ZFHX3Q15911 3703 aa3.07□□□□□ -1.92
HERC4-206ENST00000427635 FREM2Q5SZK8 3169 aa3.05□□□□□ -1.92
HERC4-206ENST00000427635 KRTAP13-1Q8IUC0 172 aa3.05□□□□□ -1.92
HERC4-206ENST00000427635 NBEAL2Q6ZNJ1 2754 aa3.05□□□□□ -1.92
HERC4-206ENST00000427635 ZZEF1O43149 2961 aa3.04□□□□□ -1.92
HERC4-206ENST00000427635 FBN3Q75N90 2809 aa3.04□□□□□ -1.92
HERC4-206ENST00000427635 TENM3Q9P273 2699 aa3.04□□□□□ -1.92
HERC4-206ENST00000427635 WDFY3Q8IZQ1 3526 aa3.03□□□□□ -1.92
HERC4-206ENST00000427635 MYO15AQ9UKN7 3530 aa3.03□□□□□ -1.92
HERC4-206ENST00000427635 TENM1Q9UKZ4 2725 aa3.02□□□□□ -1.93
HERC4-206ENST00000427635 INE1O15225 51 aa3□□□□□ -1.93
HERC4-206ENST00000427635 FBN2P35556 2912 aa3□□□□□ -1.93
HERC4-206ENST00000427635 NF1P21359 2839 aa2.99□□□□□ -1.93
HERC4-206ENST00000427635 CELSR3Q9NYQ7 3312 aa2.99□□□□□ -1.93
HERC4-206ENST00000427635 KRTAP7-1Q8IUC3 87 aa2.98□□□□□ -1.93
HERC4-206ENST00000427635 SPEGQ15772 3267 aa2.97□□□□□ -1.93
HERC4-206ENST00000427635 TGP01266 2768 aa2.97□□□□□ -1.93
HERC4-206ENST00000427635 LRBAP50851 2863 aa2.97□□□□□ -1.93
HERC4-206ENST00000427635 CELSR2Q9HCU4 2923 aa2.96□□□□□ -1.93
HERC4-206ENST00000427635 ADGRG4Q8IZF6 3080 aa2.96□□□□□ -1.93
HERC4-206ENST00000427635 KRTAP13-3Q3SY46 172 aa2.96□□□□□ -1.94
HERC4-206ENST00000427635 MXRA5Q9NR99 2828 aa2.96□□□□□ -1.94
HERC4-206ENST00000427635 DCHS1Q96JQ0 3298 aa2.95□□□□□ -1.94
HERC4-206ENST00000427635 KRTAP1-4P0C5Y4 121 aa2.95□□□□□ -1.94
HERC4-206ENST00000427635 KRTAP17-1Q9BYP8 105 aa2.94□□□□□ -1.94
HERC4-206ENST00000427635 LOC400499M0QZD8 3231 aa2.93□□□□□ -1.94
HERC4-206ENST00000427635 DCHS2Q6V1P9 2916 aa2.92□□□□□ -1.94
HERC4-206ENST00000427635 VWFP04275 2813 aa2.92□□□□□ -1.94
HERC4-206ENST00000427635 SRRM2Q9UQ35 2752 aaKnown RBP2.91□□□□□ -1.94
HERC4-206ENST00000427635 LCE2DQ5TA82 110 aaPredicted RBP2.91□□□□□ -1.94
HERC4-206ENST00000427635 ASPMQ8IZT6 3477 aa2.9□□□□□ -1.95
HERC4-206ENST00000427635 SPENQ96T58 3664 aaKnown RBP2.9□□□□□ -1.95
HERC4-206ENST00000427635 DMDP11532 3685 aa2.89□□□□□ -1.95
HERC4-206ENST00000427635 ZFHX4Q86UP3 3567 aa2.89□□□□□ -1.95
HERC4-206ENST00000427635 KRTAP3-1Q9BYR8 98 aa2.88□□□□□ -1.95
HERC4-206ENST00000427635 CELSR1Q9NYQ6 3014 aa2.87□□□□□ -1.95
HERC4-206ENST00000427635 ZANQ9Y493 2812 aa2.87□□□□□ -1.95
HERC4-206ENST00000427635 NBPF19A0A087WUL8 3843 aa2.85□□□□□ -1.95
HERC4-206ENST00000427635 OTOGQ6ZRI0 2925 aa2.84□□□□□ -1.95
HERC4-206ENST00000427635 LCE2CQ5TA81 110 aa2.84□□□□□ -1.96
HERC4-206ENST00000427635 KRTAP12-2P59991 146 aa2.83□□□□□ -1.96
HERC4-206ENST00000427635 PDZD2O15018 2839 aa2.82□□□□□ -1.96
HERC4-206ENST00000427635 FBN1P35555 2871 aaKnown RBP2.82□□□□□ -1.96
HERC4-206ENST00000427635 H0YAA0 97 aa2.81□□□□□ -1.96
HERC4-206ENST00000427635 KRTAP13-4Q3LI77 160 aa2.79□□□□□ -1.96
HERC4-206ENST00000427635 CRCT1Q9UGL9 99 aa2.76□□□□□ -1.97
HERC4-206ENST00000427635 LAMA5O15230 3695 aa2.74□□□□□ -1.97
HERC4-206ENST00000427635 BSNQ9UPA5 3926 aa2.73□□□□□ -1.97
HERC4-206ENST00000427635 LCE2AQ5TA79 106 aaPredicted RBP2.72□□□□□ -1.97
HERC4-206ENST00000427635 RELNP78509 3460 aa2.7□□□□□ -1.98
HERC4-206ENST00000427635 CSMD1Q96PZ7 3565 aa2.7□□□□□ -1.98
HERC4-206ENST00000427635 LCE2BO14633 110 aa2.69□□□□□ -1.98
HERC4-206ENST00000427635 SMG1Q96Q15 3661 aaKnown RBP2.68□□□□□ -1.98
HERC4-206ENST00000427635 COL7A1Q02388 2944 aa2.68□□□□□ -1.98
HERC4-206ENST00000427635 KRTAP4-5Q9BYR2 181 aa2.68□□□□□ -1.98
HERC4-206ENST00000427635 KRTAP10-12P60413 245 aa2.66□□□□□ -1.98
HERC4-206ENST00000427635 KRTAP19-4Q3LI73 84 aa2.65□□□□□ -1.99
HERC4-206ENST00000427635 KRTAP12-1P59990 96 aa2.64□□□□□ -1.99
HERC4-206ENST00000427635 KRTAP10-6P60371 365 aaPredicted RBP2.62□□□□□ -1.99
HERC4-206ENST00000427635 LORP23490 312 aaPredicted RBP2.61□□□□□ -1.99
HERC4-206ENST00000427635 HRNRQ86YZ3 2850 aaPredicted RBP2.61□□□□□ -1.99
HERC4-206ENST00000427635 DNHD1Q96M86 4753 aa2.6□□□□□ -1.99
HERC4-206ENST00000427635 VPS13CQ709C8 3753 aa2.6□□□□□ -1.99
HERC4-206ENST00000427635 CSMD2Q7Z408 3487 aa2.59□□□□□ -1.99
HERC4-206ENST00000427635 KRTAP8-1Q8IUC2 63 aa2.59□□□□□ -1.99
HERC4-206ENST00000427635 SVEP1Q4LDE5 3571 aa2.59□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms