RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SPANXA2-OT1Q8N9U9 137 aa5.87□□□□□ -1.47
SS18-203ENST00000415083 PSORS1C2Q9UIG4 136 aa5.87□□□□□ -1.47
SS18-203ENST00000415083 A0A087WTM6 91 aa5.86□□□□□ -1.47
SS18-203ENST00000415083 CD164Q04900 197 aa5.86□□□□□ -1.47
SS18-203ENST00000415083 COA5Q86WW8 74 aa5.86□□□□□ -1.47
SS18-203ENST00000415083 SPAG11AQ6PDA7 123 aa5.84□□□□□ -1.47
SS18-203ENST00000415083 IGLV5-52A0A0A0MRZ9 124 aa5.84□□□□□ -1.47
SS18-203ENST00000415083 IGHV6-1A0A0B4J1U7 121 aa5.84□□□□□ -1.47
SS18-203ENST00000415083 Q6ZR54 194 aa5.84□□□□□ -1.48
SS18-203ENST00000415083 C8orf17Q9NRJ1 99 aa5.84□□□□□ -1.48
SS18-203ENST00000415083 A6NED7 52 aa5.83□□□□□ -1.48
SS18-203ENST00000415083 H3BPC8 53 aa5.83□□□□□ -1.48
SS18-203ENST00000415083 LIMD2Q9BT23 127 aa5.83□□□□□ -1.48
SS18-203ENST00000415083 IGLV7-46A0A075B6I9 117 aa5.82□□□□□ -1.48
SS18-203ENST00000415083 LCA10Q71F78 164 aa5.82□□□□□ -1.48
SS18-203ENST00000415083 RTL8CO15255 209 aa5.81□□□□□ -1.48
SS18-203ENST00000415083 KRTAP13-3Q3SY46 172 aa5.81□□□□□ -1.48
SS18-203ENST00000415083 PLAC8Q9NZF1 115 aa5.81□□□□□ -1.48
SS18-203ENST00000415083 A0A1B0GVX0 72 aa5.8□□□□□ -1.48
SS18-203ENST00000415083 Q5W150 140 aa5.8□□□□□ -1.48
SS18-203ENST00000415083 NUPR2A6NF83 97 aa5.79□□□□□ -1.48
SS18-203ENST00000415083 PKHD1P08F94 4074 aa5.79□□□□□ -1.48
SS18-203ENST00000415083 ZNF861PO60384 105 aa5.78□□□□□ -1.48
SS18-203ENST00000415083 SPINK6Q6UWN8 80 aa5.78□□□□□ -1.48
SS18-203ENST00000415083 CDK2AP2O75956 126 aa5.75□□□□□ -1.49
SS18-203ENST00000415083 HRES1P13985 223 aa5.75□□□□□ -1.49
SS18-203ENST00000415083 Q75L30 129 aa5.75□□□□□ -1.49
SS18-203ENST00000415083 MRPL34Q9BQ48 92 aaKnown RBP5.75□□□□□ -1.49
SS18-203ENST00000415083 SPINK7P58062 85 aa5.74□□□□□ -1.49
SS18-203ENST00000415083 LOC101927531A0A1B0GV80 90 aa5.74□□□□□ -1.49
SS18-203ENST00000415083 PRR26Q8N8Z3 221 aa5.74□□□□□ -1.49
SS18-203ENST00000415083 TP53AIP1Q9HCN2 124 aa5.74□□□□□ -1.49
SS18-203ENST00000415083 IGLV7-43P04211 117 aa5.72□□□□□ -1.49
SS18-203ENST00000415083 KRTAP10-2P60368 255 aa5.72□□□□□ -1.49
SS18-203ENST00000415083 RETNLBQ9BQ08 111 aa5.71□□□□□ -1.49
SS18-203ENST00000415083 ZNF706Q9Y5V0 76 aaPredicted RBP5.71□□□□□ -1.5
SS18-203ENST00000415083 ATP11AUNQ6ZP68 121 aa5.7□□□□□ -1.5
SS18-203ENST00000415083 SACSQ9NZJ4 4579 aa5.7□□□□□ -1.5
SS18-203ENST00000415083 KRTAP13-2Q52LG2 175 aa5.7□□□□□ -1.5
SS18-203ENST00000415083 KTN1-AS1Q86SY8 53 aa5.69□□□□□ -1.5
SS18-203ENST00000415083 LINC01558Q9Y6Z2 57 aa5.69□□□□□ -1.5
SS18-203ENST00000415083 CDC42SE1Q9NRR8 79 aa5.68□□□□□ -1.5
SS18-203ENST00000415083 CIRBP-AS1Q8TBR5 109 aa5.68□□□□□ -1.5
SS18-203ENST00000415083 A6NN06 94 aa5.67□□□□□ -1.5
SS18-203ENST00000415083 RBM12B-AS1Q9P1G2 102 aa5.67□□□□□ -1.5
SS18-203ENST00000415083 PKHD1L1Q86WI1 4243 aa5.65□□□□□ -1.5
SS18-203ENST00000415083 KRTAP16-1A8MUX0 517 aa5.65□□□□□ -1.51
SS18-203ENST00000415083 C1orf134Q5TEV5 83 aa5.64□□□□□ -1.51
SS18-203ENST00000415083 KRTAP1-4P0C5Y4 121 aa5.62□□□□□ -1.51
SS18-203ENST00000415083 KRTAP10-1P60331 282 aa5.62□□□□□ -1.51
SS18-203ENST00000415083 DYNC1H1Q14204 4646 aaKnown RBP5.61□□□□□ -1.51
SS18-203ENST00000415083 Q6ZSA8 131 aa5.61□□□□□ -1.51
SS18-203ENST00000415083 APOBP04114 4563 aaKnown RBP5.61□□□□□ -1.51
SS18-203ENST00000415083 LY6G6CO95867 125 aa5.59□□□□□ -1.51
SS18-203ENST00000415083 SSBP3-AS1Q7Z2R9 100 aa5.59□□□□□ -1.51
SS18-203ENST00000415083 FAT1Q14517 4588 aa5.59□□□□□ -1.51
SS18-203ENST00000415083 PRAC1Q96KF2 57 aa5.58□□□□□ -1.52
SS18-203ENST00000415083 C7orf65Q6ZTY9 151 aa5.57□□□□□ -1.52
SS18-203ENST00000415083 ACYP2P14621 99 aa5.57□□□□□ -1.52
SS18-203ENST00000415083 ADM2Q7Z4H4 148 aa5.57□□□□□ -1.52
SS18-203ENST00000415083 DMAC1Q96GE9 116 aa5.57□□□□□ -1.52
SS18-203ENST00000415083 LINC00313P59037 77 aa5.56□□□□□ -1.52
SS18-203ENST00000415083 IGKV2-30P06310 120 aa5.55□□□□□ -1.52
SS18-203ENST00000415083 C8orf87E5RJ46 101 aa5.55□□□□□ -1.52
SS18-203ENST00000415083 A0A1B0GU69 56 aa5.52□□□□□ -1.53
SS18-203ENST00000415083 IGKV2D-30A0A075B6S6 120 aa5.52□□□□□ -1.53
SS18-203ENST00000415083 FAM229AH3BQW9 127 aa5.49□□□□□ -1.53
SS18-203ENST00000415083 SPINK1P00995 79 aa5.48□□□□□ -1.53
SS18-203ENST00000415083 RYR2Q92736 4967 aa5.44□□□□□ -1.54
SS18-203ENST00000415083 TNXBP22105 4242 aa5.44□□□□□ -1.54
SS18-203ENST00000415083 MIR22HGQ0VDD5 57 aa5.44□□□□□ -1.54
SS18-203ENST00000415083 KMT2CQ8NEZ4 4911 aaKnown RBP5.43□□□□□ -1.54
SS18-203ENST00000415083 HSPG2P98160 4391 aa5.42□□□□□ -1.54
SS18-203ENST00000415083 PLA2G1BP04054 148 aaKnown RBP5.42□□□□□ -1.54
SS18-203ENST00000415083 Q8N1X5 172 aa5.42□□□□□ -1.54
SS18-203ENST00000415083 FAT3Q8TDW7 4589 aa5.42□□□□□ -1.54
SS18-203ENST00000415083 LRP1Q07954 4544 aaKnown RBP5.42□□□□□ -1.54
SS18-203ENST00000415083 SPATA8Q6RVD6 105 aa5.41□□□□□ -1.54
SS18-203ENST00000415083 UQCR11O14957 56 aa5.41□□□□□ -1.54
SS18-203ENST00000415083 KRTAP10-4P60372 401 aaPredicted RBP5.4□□□□□ -1.55
SS18-203ENST00000415083 TYMSOSQ8TAI1 123 aa5.39□□□□□ -1.55
SS18-203ENST00000415083 KRTAP3-1Q9BYR8 98 aa5.38□□□□□ -1.55
SS18-203ENST00000415083 CSAG1Q6PB30 78 aa5.35□□□□□ -1.55
SS18-203ENST00000415083 FLG2Q5D862 2391 aaPredicted RBP5.34□□□□□ -1.55
SS18-203ENST00000415083 SMR3BP02814 79 aaPredicted RBP5.34□□□□□ -1.55
SS18-203ENST00000415083 KRTAP21-3Q3LHN1 58 aa5.34□□□□□ -1.55
SS18-203ENST00000415083 C4orf48Q5BLP8 95 aa5.34□□□□□ -1.55
SS18-203ENST00000415083 LINC01554Q52M75 96 aa5.33□□□□□ -1.56
SS18-203ENST00000415083 LINC00304Q8N9R0 145 aa5.32□□□□□ -1.56
SS18-203ENST00000415083 C9orf92A6NGG3 77 aa5.3□□□□□ -1.56
SS18-203ENST00000415083 A0A1B0GVY2 172 aa5.3□□□□□ -1.56
SS18-203ENST00000415083 MYCBP2O75592 4640 aa5.3□□□□□ -1.56
SS18-203ENST00000415083 A8MUU9 505 aa5.29□□□□□ -1.56
SS18-203ENST00000415083 RPS29P62273 56 aaKnown RBP5.29□□□□□ -1.56
SS18-203ENST00000415083 C20orf166-AS1Q96NR2 134 aa5.29□□□□□ -1.56
SS18-203ENST00000415083 RYR3Q15413 4870 aa5.27□□□□□ -1.57
SS18-203ENST00000415083 LPAP08519 4548 aa5.27□□□□□ -1.57
SS18-203ENST00000415083 H0YAA0 97 aa5.26□□□□□ -1.57
SS18-203ENST00000415083 KRTAP17-1Q9BYP8 105 aa5.22□□□□□ -1.57
SS18-203ENST00000415083 CRIPTQ9P021 101 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms