RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 FAM229AH3BQW9 127 aa9.31□□□□□ -0.92
SHMT2-202ENST00000414700 NDUFB1O75438 58 aa9.31□□□□□ -0.92
SHMT2-202ENST00000414700 PKHD1L1Q86WI1 4243 aa9.3□□□□□ -0.92
SHMT2-202ENST00000414700 K7EQZ3 153 aa9.28□□□□□ -0.92
SHMT2-202ENST00000414700 PLA2G1BP04054 148 aaKnown RBP9.27□□□□□ -0.92
SHMT2-202ENST00000414700 HCG22E2RYF7 251 aa9.27□□□□□ -0.93
SHMT2-202ENST00000414700 A8MUN3 132 aa9.26□□□□□ -0.93
SHMT2-202ENST00000414700 SPINK6Q6UWN8 80 aa9.26□□□□□ -0.93
SHMT2-202ENST00000414700 Q8N1X5 172 aa9.26□□□□□ -0.93
SHMT2-202ENST00000414700 SPRR1BP22528 89 aa9.26□□□□□ -0.93
SHMT2-202ENST00000414700 PRR4Q16378 134 aa9.26□□□□□ -0.93
SHMT2-202ENST00000414700 CD164Q04900 197 aa9.25□□□□□ -0.93
SHMT2-202ENST00000414700 LINC00483Q53H64 154 aa9.25□□□□□ -0.93
SHMT2-202ENST00000414700 KRTAP1-4P0C5Y4 121 aa9.24□□□□□ -0.93
SHMT2-202ENST00000414700 ZNF706Q9Y5V0 76 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-202ENST00000414700 LRP1Q07954 4544 aaKnown RBP9.23□□□□□ -0.93
SHMT2-202ENST00000414700 FLG2Q5D862 2391 aaPredicted RBP9.23□□□□□ -0.93
SHMT2-202ENST00000414700 Q5VV11 94 aa9.23□□□□□ -0.93
SHMT2-202ENST00000414700 MP68P56378 58 aa9.22□□□□□ -0.93
SHMT2-202ENST00000414700 MYCBP2O75592 4640 aa9.22□□□□□ -0.93
SHMT2-202ENST00000414700 A0A087X002 238 aa9.21□□□□□ -0.93
SHMT2-202ENST00000414700 KRTAP4-5Q9BYR2 181 aa9.21□□□□□ -0.94
SHMT2-202ENST00000414700 IGLV9-49A0A0B4J1Y8 123 aa9.2□□□□□ -0.94
SHMT2-202ENST00000414700 HERC2O95714 4834 aa9.19□□□□□ -0.94
SHMT2-202ENST00000414700 A0A0G2JQZ4 141 aa9.19□□□□□ -0.94
SHMT2-202ENST00000414700 SPANXA2-OT1Q8N9U9 137 aa9.19□□□□□ -0.94
SHMT2-202ENST00000414700 LIMD2Q9BT23 127 aa9.18□□□□□ -0.94
SHMT2-202ENST00000414700 KRTAP13-2Q52LG2 175 aa9.15□□□□□ -0.94
SHMT2-202ENST00000414700 LINC00208Q96KT6 92 aa9.15□□□□□ -0.94
SHMT2-202ENST00000414700 A8MU10 97 aa9.15□□□□□ -0.94
SHMT2-202ENST00000414700 H3BPC8 53 aa9.15□□□□□ -0.94
SHMT2-202ENST00000414700 MOBPQ13875 183 aa9.15□□□□□ -0.94
SHMT2-202ENST00000414700 Q8N9P0 234 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-202ENST00000414700 CHKB-CPT1BH3BT56 60 aa9.14□□□□□ -0.95
SHMT2-202ENST00000414700 FAT3Q8TDW7 4589 aa9.14□□□□□ -0.95
SHMT2-202ENST00000414700 ABCA13Q86UQ4 5058 aa9.14□□□□□ -0.95
SHMT2-202ENST00000414700 KTN1-AS1Q86SY8 53 aa9.14□□□□□ -0.95
SHMT2-202ENST00000414700 WFDC13Q8IUB5 93 aa9.14□□□□□ -0.95
SHMT2-202ENST00000414700 IGLV8-61A0A075B6I0 122 aa9.12□□□□□ -0.95
SHMT2-202ENST00000414700 PRR26Q8N8Z3 221 aa9.12□□□□□ -0.95
SHMT2-202ENST00000414700 IGFL1Q6UW32 110 aa9.12□□□□□ -0.95
SHMT2-202ENST00000414700 PRR15LQ9BU68 103 aa9.12□□□□□ -0.95
SHMT2-202ENST00000414700 TNXBP22105 4242 aa9.11□□□□□ -0.95
SHMT2-202ENST00000414700 H0Y9P7 68 aa9.1□□□□□ -0.95
SHMT2-202ENST00000414700 KRTAP29-1A8MX34 341 aaPredicted RBP9.1□□□□□ -0.95
SHMT2-202ENST00000414700 Q75L30 129 aa9.09□□□□□ -0.95
SHMT2-202ENST00000414700 ATP11AUNQ6ZP68 121 aa9.08□□□□□ -0.96
SHMT2-202ENST00000414700 DEFB116Q30KQ4 102 aa9.07□□□□□ -0.96
SHMT2-202ENST00000414700 LOC101927531A0A1B0GV80 90 aa9.05□□□□□ -0.96
SHMT2-202ENST00000414700 NDUFS5O43920 106 aa9.05□□□□□ -0.96
SHMT2-202ENST00000414700 TYMSOSQ8TAI1 123 aa9.05□□□□□ -0.96
SHMT2-202ENST00000414700 CASC2Q6XLA1 102 aa9.04□□□□□ -0.96
SHMT2-202ENST00000414700 SPTSSBQ8NFR3 76 aa9.04□□□□□ -0.96
SHMT2-202ENST00000414700 LCA10Q71F78 164 aa9.04□□□□□ -0.96
SHMT2-202ENST00000414700 RBM12B-AS1Q9P1G2 102 aa9.04□□□□□ -0.96
SHMT2-202ENST00000414700 A0A087WSZ3 146 aa9.03□□□□□ -0.96
SHMT2-202ENST00000414700 SSBP3-AS1Q7Z2R9 100 aa9.03□□□□□ -0.96
SHMT2-202ENST00000414700 A6NED7 52 aa9.02□□□□□ -0.97
SHMT2-202ENST00000414700 A6NN06 94 aa9.01□□□□□ -0.97
SHMT2-202ENST00000414700 COA5Q86WW8 74 aa9.01□□□□□ -0.97
SHMT2-202ENST00000414700 CDC42SE1Q9NRR8 79 aa8.99□□□□□ -0.97
SHMT2-202ENST00000414700 KRTAP10-8P60410 259 aa8.97□□□□□ -0.97
SHMT2-202ENST00000414700 DMBT1Q9UGM3 2413 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-202ENST00000414700 IGLV7-46A0A075B6I9 117 aa8.97□□□□□ -0.97
SHMT2-202ENST00000414700 A8MWP4 228 aa8.97□□□□□ -0.97
SHMT2-202ENST00000414700 PCLOQ9Y6V0 5065 aa8.97□□□□□ -0.97
SHMT2-202ENST00000414700 MT1HL1P0DM35 61 aa8.95□□□□□ -0.98
SHMT2-202ENST00000414700 LINC00304Q8N9R0 145 aa8.94□□□□□ -0.98
SHMT2-202ENST00000414700 LINC01558Q9Y6Z2 57 aa8.92□□□□□ -0.98
SHMT2-202ENST00000414700 C7orf65Q6ZTY9 151 aa8.92□□□□□ -0.98
SHMT2-202ENST00000414700 LINC00472Q9H8W2 130 aa8.91□□□□□ -0.98
SHMT2-202ENST00000414700 C4orf48Q5BLP8 95 aa8.89□□□□□ -0.99
SHMT2-202ENST00000414700 MMP24-AS1A0A0U1RRL7 71 aa8.88□□□□□ -0.99
SHMT2-202ENST00000414700 SPINK1P00995 79 aa8.87□□□□□ -0.99
SHMT2-202ENST00000414700 SPAG11AQ6PDA7 123 aa8.85□□□□□ -0.99
SHMT2-202ENST00000414700 PCOTHQ58A44 107 aa8.84□□□□□ -0.99
SHMT2-202ENST00000414700 TP53AIP1Q9HCN2 124 aa8.83□□□□□ -1
SHMT2-202ENST00000414700 Q96NJ1 140 aa8.83□□□□□ -1
SHMT2-202ENST00000414700 RPS29P62273 56 aaKnown RBP8.8□□□□□ -1
SHMT2-202ENST00000414700 ASB16-AS1Q495Z4 193 aa8.8□□□□□ -1
SHMT2-202ENST00000414700 SPINK7P58062 85 aa8.79□□□□□ -1
SHMT2-202ENST00000414700 RETNLBQ9BQ08 111 aa8.78□□□□□ -1
SHMT2-202ENST00000414700 HRES1P13985 223 aa8.76□□□□□ -1.01
SHMT2-202ENST00000414700 J3QL48 77 aa8.76□□□□□ -1.01
SHMT2-202ENST00000414700 C8orf17Q9NRJ1 99 aa8.72□□□□□ -1.01
SHMT2-202ENST00000414700 HERC1Q15751 4861 aa8.71□□□□□ -1.02
SHMT2-202ENST00000414700 C8orf87E5RJ46 101 aa8.67□□□□□ -1.02
SHMT2-202ENST00000414700 LINC00313P59037 77 aa8.66□□□□□ -1.02
SHMT2-202ENST00000414700 A0A1B0GVX0 72 aa8.64□□□□□ -1.03
SHMT2-202ENST00000414700 MRPL34Q9BQ48 92 aaKnown RBP8.63□□□□□ -1.03
SHMT2-202ENST00000414700 IGHV6-1A0A0B4J1U7 121 aa8.62□□□□□ -1.03
SHMT2-202ENST00000414700 NOTCH2NLQ7Z3S9 236 aa8.62□□□□□ -1.03
SHMT2-202ENST00000414700 LPAP08519 4548 aa8.59□□□□□ -1.03
SHMT2-202ENST00000414700 PRAC1Q96KF2 57 aa8.58□□□□□ -1.04
SHMT2-202ENST00000414700 ACYP2P14621 99 aa8.56□□□□□ -1.04
SHMT2-202ENST00000414700 C9orf92A6NGG3 77 aa8.55□□□□□ -1.04
SHMT2-202ENST00000414700 KRTAP13-3Q3SY46 172 aa8.52□□□□□ -1.05
SHMT2-202ENST00000414700 LINC01554Q52M75 96 aa8.51□□□□□ -1.05
SHMT2-202ENST00000414700 ADM2Q7Z4H4 148 aa8.5□□□□□ -1.05
SHMT2-202ENST00000414700 SPATA8Q6RVD6 105 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 228.9 ms