RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 Q8N9P0 234 aaPredicted RBP2.89□□□□□ -1.95
SF3B1-202ENST00000409915 SMIM11BQ8TCY0 68 aa2.89□□□□□ -1.95
SF3B1-202ENST00000409915 Q9BRP9 147 aa2.89□□□□□ -1.95
SF3B1-202ENST00000409915 CDC42SE2Q9NRR3 84 aa2.89□□□□□ -1.95
SF3B1-202ENST00000409915 APOBP04114 4563 aaKnown RBP2.88□□□□□ -1.95
SF3B1-202ENST00000409915 A0A1B0GVY2 172 aa2.88□□□□□ -1.95
SF3B1-202ENST00000409915 LINC01556Q5JQF7 62 aa2.88□□□□□ -1.95
SF3B1-202ENST00000409915 CLPSL2Q6UWE3 100 aa2.88□□□□□ -1.95
SF3B1-202ENST00000409915 Q6ZRN7 208 aaPredicted RBP2.88□□□□□ -1.95
SF3B1-202ENST00000409915 XAGE1AQ9HD64 81 aa2.88□□□□□ -1.95
SF3B1-202ENST00000409915 IGHV3-64A0A075B6Q5 118 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 FAM168BA1KXE4 195 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 A8MU10 97 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 LECT2O14960 151 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 SPANXA2-OT1Q8N9U9 137 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 PLAC8Q9NZF1 115 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 KLK12Q9UKR0 248 aa2.87□□□□□ -1.95
SF3B1-202ENST00000409915 ABCA13Q86UQ4 5058 aa2.86□□□□□ -1.95
SF3B1-202ENST00000409915 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.86□□□□□ -1.95
SF3B1-202ENST00000409915 NDUFB1O75438 58 aa2.86□□□□□ -1.95
SF3B1-202ENST00000409915 ANGP03950 147 aaKnown RBP2.86□□□□□ -1.95
SF3B1-202ENST00000409915 C9orf116Q5BN46 136 aaPredicted RBP2.86□□□□□ -1.95
SF3B1-202ENST00000409915 Q8N814 137 aa2.86□□□□□ -1.95
SF3B1-202ENST00000409915 CDKN2A-AS1Q9UH64 79 aa2.86□□□□□ -1.95
SF3B1-202ENST00000409915 HSPG2P98160 4391 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 IGLV4-60A0A075B6I1 120 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 IGLV10-54A0A075B6I4 117 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 IGKV2D-24A0A075B6R9 120 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 A0A087WTM6 91 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 IGKV3OR2-268A0A0C4DH90 116 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 CHKB-CPT1BH3BT56 60 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 IGKV4-1P06312 121 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 MOBPQ13875 183 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 DNAH8Q96JB1 4490 aa2.85□□□□□ -1.95
SF3B1-202ENST00000409915 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.84□□□□□ -1.95
SF3B1-202ENST00000409915 IGKV2D-30A0A075B6S6 120 aa2.84□□□□□ -1.95
SF3B1-202ENST00000409915 CNBPP62633 177 aaKnown RBP2.84□□□□□ -1.95
SF3B1-202ENST00000409915 HAMPP81172 84 aa2.84□□□□□ -1.95
SF3B1-202ENST00000409915 HIGD2AQ9BW72 106 aa2.84□□□□□ -1.95
SF3B1-202ENST00000409915 PCLOQ9Y6V0 5065 aa2.83□□□□□ -1.96
SF3B1-202ENST00000409915 LRCOL1A6NCL2 159 aa2.83□□□□□ -1.96
SF3B1-202ENST00000409915 PRR34Q9NV39 138 aa2.83□□□□□ -1.96
SF3B1-202ENST00000409915 SPTSSBQ8NFR3 76 aa2.82□□□□□ -1.96
SF3B1-202ENST00000409915 LINC01558Q9Y6Z2 57 aa2.82□□□□□ -1.96
SF3B1-202ENST00000409915 FAT1Q14517 4588 aa2.82□□□□□ -1.96
SF3B1-202ENST00000409915 H3BPC8 53 aa2.81□□□□□ -1.96
SF3B1-202ENST00000409915 KRTAP10-1P60331 282 aa2.81□□□□□ -1.96
SF3B1-202ENST00000409915 KRTAP26-1Q6PEX3 210 aa2.81□□□□□ -1.96
SF3B1-202ENST00000409915 LINC00575Q6W349 94 aa2.81□□□□□ -1.96
SF3B1-202ENST00000409915 ETDCA0A1B0GVM5 59 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 A8MUU9 505 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 COX6A2Q02221 97 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 DEFB116Q30KQ4 102 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 LINC00208Q96KT6 92 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 PRR15LQ9BU68 103 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 KCNQ1DNQ9H478 68 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 VPS13BQ7Z7G8 4022 aa2.8□□□□□ -1.96
SF3B1-202ENST00000409915 LINC00959A0A1B0GUT2 108 aa2.79□□□□□ -1.96
SF3B1-202ENST00000409915 KRTAP29-1A8MX34 341 aaPredicted RBP2.79□□□□□ -1.96
SF3B1-202ENST00000409915 COX7BP24311 80 aa2.79□□□□□ -1.96
SF3B1-202ENST00000409915 CASC2Q6XLA1 102 aa2.79□□□□□ -1.96
SF3B1-202ENST00000409915 Q5W150 140 aa2.78□□□□□ -1.96
SF3B1-202ENST00000409915 COX7B2Q8TF08 81 aa2.78□□□□□ -1.96
SF3B1-202ENST00000409915 C14orf177Q52M58 125 aa2.77□□□□□ -1.97
SF3B1-202ENST00000409915 LCE1AQ5T7P2 110 aa2.77□□□□□ -1.97
SF3B1-202ENST00000409915 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.77□□□□□ -1.97
SF3B1-202ENST00000409915 PANO1I0J062 215 aa2.76□□□□□ -1.97
SF3B1-202ENST00000409915 ZNF861PO60384 105 aa2.76□□□□□ -1.97
SF3B1-202ENST00000409915 SMR3BP02814 79 aaPredicted RBP2.76□□□□□ -1.97
SF3B1-202ENST00000409915 IGLV7-43P04211 117 aa2.76□□□□□ -1.97
SF3B1-202ENST00000409915 GVQW2A0A096LPI5 108 aaPredicted RBP2.75□□□□□ -1.97
SF3B1-202ENST00000409915 SPAG11BQ08648 103 aa2.75□□□□□ -1.97
SF3B1-202ENST00000409915 COX17Q14061 63 aa2.75□□□□□ -1.97
SF3B1-202ENST00000409915 Q6ZSA8 131 aa2.75□□□□□ -1.97
SF3B1-202ENST00000409915 C9orf163Q8N9P6 203 aa2.75□□□□□ -1.97
SF3B1-202ENST00000409915 MYCBP2O75592 4640 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 PKHD1L1Q86WI1 4243 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 IGKV2-24A0A0C4DH68 120 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 A0A1W2PNM2 257 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 LINC00158P58513 81 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 Q5VSD8 79 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 Q8NDZ9 215 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 RETNLBQ9BQ08 111 aa2.74□□□□□ -1.97
SF3B1-202ENST00000409915 A0A096LNI7 61 aa2.73□□□□□ -1.97
SF3B1-202ENST00000409915 IGLV6-57P01721 117 aa2.73□□□□□ -1.97
SF3B1-202ENST00000409915 TOMM7Q9P0U1 55 aa2.73□□□□□ -1.97
SF3B1-202ENST00000409915 SRRM2Q9UQ35 2752 aaKnown RBP2.72□□□□□ -1.97
SF3B1-202ENST00000409915 SPINK7P58062 85 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 UNQ6190/PRO20217Q6UXQ8 127 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 COA5Q86WW8 74 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 KRTAP7-1Q8IUC3 87 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 Q8IZM0 81 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 ST20-AS1Q8NBB2 130 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 SPACA4Q8TDM5 124 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 FAT3Q8TDW7 4589 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 C6orf48Q9UBA6 75 aa2.72□□□□□ -1.97
SF3B1-202ENST00000409915 IGLV5-48A0A075B6I7 105 aa2.71□□□□□ -1.98
SF3B1-202ENST00000409915 SPATA8Q6RVD6 105 aa2.71□□□□□ -1.98
SF3B1-202ENST00000409915 Q6ZQY7 126 aa2.71□□□□□ -1.98
SF3B1-202ENST00000409915 Q8N9L7 120 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms