RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MRPL34Q9BQ48 92 aaKnown RBP7.88□□□□□ -1.15
VPS54-203ENST00000409558 CD164Q04900 197 aa7.87□□□□□ -1.15
VPS54-203ENST00000409558 LINC00483Q53H64 154 aa7.87□□□□□ -1.15
VPS54-203ENST00000409558 LRP1BQ9NZR2 4599 aa7.86□□□□□ -1.15
VPS54-203ENST00000409558 A8MU10 97 aa7.86□□□□□ -1.15
VPS54-203ENST00000409558 SPAG11AQ6PDA7 123 aa7.86□□□□□ -1.15
VPS54-203ENST00000409558 Q5W150 140 aa7.85□□□□□ -1.15
VPS54-203ENST00000409558 PRR15LQ9BU68 103 aa7.85□□□□□ -1.15
VPS54-203ENST00000409558 DYNC2H1Q8NCM8 4307 aaKnown RBP7.85□□□□□ -1.15
VPS54-203ENST00000409558 COA5Q86WW8 74 aa7.83□□□□□ -1.16
VPS54-203ENST00000409558 CHKB-CPT1BH3BT56 60 aa7.82□□□□□ -1.16
VPS54-203ENST00000409558 PLA2G1BP04054 148 aaKnown RBP7.82□□□□□ -1.16
VPS54-203ENST00000409558 Q8N9P0 234 aaPredicted RBP7.82□□□□□ -1.16
VPS54-203ENST00000409558 KRTAP13-2Q52LG2 175 aa7.8□□□□□ -1.16
VPS54-203ENST00000409558 C4orf48Q5BLP8 95 aa7.79□□□□□ -1.16
VPS54-203ENST00000409558 PRO0628Q9UI54 55 aa7.79□□□□□ -1.16
VPS54-203ENST00000409558 DNAH5Q8TE73 4624 aa7.79□□□□□ -1.16
VPS54-203ENST00000409558 IGKV2D-30A0A075B6S6 120 aa7.79□□□□□ -1.16
VPS54-203ENST00000409558 IGKV2-30P06310 120 aa7.79□□□□□ -1.16
VPS54-203ENST00000409558 SPTSSBQ8NFR3 76 aa7.79□□□□□ -1.16
VPS54-203ENST00000409558 FLG2Q5D862 2391 aaPredicted RBP7.78□□□□□ -1.16
VPS54-203ENST00000409558 PRR26Q8N8Z3 221 aa7.78□□□□□ -1.16
VPS54-203ENST00000409558 LINC00313P59037 77 aa7.77□□□□□ -1.16
VPS54-203ENST00000409558 CYP4F30PQ9H0H9 118 aa7.76□□□□□ -1.17
VPS54-203ENST00000409558 TP53AIP1Q9HCN2 124 aa7.76□□□□□ -1.17
VPS54-203ENST00000409558 DMBT1Q9UGM3 2413 aaPredicted RBP7.76□□□□□ -1.17
VPS54-203ENST00000409558 TYMSOSQ8TAI1 123 aa7.75□□□□□ -1.17
VPS54-203ENST00000409558 PKHD1P08F94 4074 aa7.74□□□□□ -1.17
VPS54-203ENST00000409558 A6NED7 52 aa7.73□□□□□ -1.17
VPS54-203ENST00000409558 C1orf195Q5TG92 126 aa7.72□□□□□ -1.17
VPS54-203ENST00000409558 H3BPC8 53 aa7.72□□□□□ -1.17
VPS54-203ENST00000409558 SSBP3-AS1Q7Z2R9 100 aa7.72□□□□□ -1.17
VPS54-203ENST00000409558 FAT1Q14517 4588 aa7.71□□□□□ -1.18
VPS54-203ENST00000409558 VPS13BQ7Z7G8 4022 aa7.71□□□□□ -1.18
VPS54-203ENST00000409558 IGLV7-46A0A075B6I9 117 aa7.7□□□□□ -1.18
VPS54-203ENST00000409558 C9orf92A6NGG3 77 aa7.7□□□□□ -1.18
VPS54-203ENST00000409558 SPINK1P00995 79 aa7.7□□□□□ -1.18
VPS54-203ENST00000409558 ALMS1Q8TCU4 4167 aa7.7□□□□□ -1.18
VPS54-203ENST00000409558 HRES1P13985 223 aa7.69□□□□□ -1.18
VPS54-203ENST00000409558 Q1T7F1 81 aa7.69□□□□□ -1.18
VPS54-203ENST00000409558 FAT2Q9NYQ8 4349 aa7.69□□□□□ -1.18
VPS54-203ENST00000409558 SPANXA2-OT1Q8N9U9 137 aa7.68□□□□□ -1.18
VPS54-203ENST00000409558 Q5VV11 94 aa7.67□□□□□ -1.18
VPS54-203ENST00000409558 ASB16-AS1Q495Z4 193 aa7.64□□□□□ -1.19
VPS54-203ENST00000409558 KRTAP1-4P0C5Y4 121 aa7.64□□□□□ -1.19
VPS54-203ENST00000409558 LOC101927531A0A1B0GV80 90 aa7.62□□□□□ -1.19
VPS54-203ENST00000409558 Q8N1X5 172 aa7.61□□□□□ -1.19
VPS54-203ENST00000409558 PMAIP1Q13794 54 aa7.6□□□□□ -1.19
VPS54-203ENST00000409558 V9GYY9 64 aa7.6□□□□□ -1.19
VPS54-203ENST00000409558 Q6ZSA8 131 aa7.6□□□□□ -1.19
VPS54-203ENST00000409558 LIMD2Q9BT23 127 aa7.59□□□□□ -1.19
VPS54-203ENST00000409558 LINC00304Q8N9R0 145 aa7.57□□□□□ -1.2
VPS54-203ENST00000409558 C8orf87E5RJ46 101 aa7.57□□□□□ -1.2
VPS54-203ENST00000409558 FAM229AH3BQW9 127 aa7.57□□□□□ -1.2
VPS54-203ENST00000409558 SPINK7P58062 85 aa7.56□□□□□ -1.2
VPS54-203ENST00000409558 C7orf65Q6ZTY9 151 aa7.56□□□□□ -1.2
VPS54-203ENST00000409558 ACYP2P14621 99 aa7.54□□□□□ -1.2
VPS54-203ENST00000409558 PKD1P98161 4303 aa7.53□□□□□ -1.2
VPS54-203ENST00000409558 LCA10Q71F78 164 aa7.52□□□□□ -1.21
VPS54-203ENST00000409558 DYNC1H1Q14204 4646 aaKnown RBP7.51□□□□□ -1.21
VPS54-203ENST00000409558 SACSQ9NZJ4 4579 aa7.51□□□□□ -1.21
VPS54-203ENST00000409558 KRTAP21-3Q3LHN1 58 aa7.5□□□□□ -1.21
VPS54-203ENST00000409558 KMT2CQ8NEZ4 4911 aaKnown RBP7.5□□□□□ -1.21
VPS54-203ENST00000409558 KRTAP13-3Q3SY46 172 aa7.49□□□□□ -1.21
VPS54-203ENST00000409558 KRTAP16-1A8MUX0 517 aa7.45□□□□□ -1.22
VPS54-203ENST00000409558 A0A1B0GU69 56 aa7.44□□□□□ -1.22
VPS54-203ENST00000409558 MYCBP2O75592 4640 aa7.43□□□□□ -1.22
VPS54-203ENST00000409558 LINC01558Q9Y6Z2 57 aa7.43□□□□□ -1.22
VPS54-203ENST00000409558 Q75L30 129 aa7.42□□□□□ -1.22
VPS54-203ENST00000409558 LRP1Q07954 4544 aaKnown RBP7.41□□□□□ -1.22
VPS54-203ENST00000409558 DMAC1Q96GE9 116 aa7.4□□□□□ -1.23
VPS54-203ENST00000409558 APOBP04114 4563 aaKnown RBP7.35□□□□□ -1.23
VPS54-203ENST00000409558 CDC42SE1Q9NRR8 79 aa7.33□□□□□ -1.24
VPS54-203ENST00000409558 ATP11AUNQ6ZP68 121 aa7.28□□□□□ -1.24
VPS54-203ENST00000409558 A0A1B0GVY2 172 aa7.27□□□□□ -1.25
VPS54-203ENST00000409558 PRAC1Q96KF2 57 aa7.26□□□□□ -1.25
VPS54-203ENST00000409558 FAT3Q8TDW7 4589 aa7.26□□□□□ -1.25
VPS54-203ENST00000409558 Q5VSD8 79 aa7.25□□□□□ -1.25
VPS54-203ENST00000409558 SEC61GP60059 68 aa7.25□□□□□ -1.25
VPS54-203ENST00000409558 KIAA1109Q2LD37 5005 aa7.25□□□□□ -1.25
VPS54-203ENST00000409558 RYR2Q92736 4967 aa7.24□□□□□ -1.25
VPS54-203ENST00000409558 MIR22HGQ0VDD5 57 aa7.23□□□□□ -1.25
VPS54-203ENST00000409558 ADM2Q7Z4H4 148 aa7.23□□□□□ -1.25
VPS54-203ENST00000409558 UQCR11O14957 56 aa7.2□□□□□ -1.26
VPS54-203ENST00000409558 KRTAP10-4P60372 401 aaPredicted RBP7.2□□□□□ -1.26
VPS54-203ENST00000409558 A6NN06 94 aa7.17□□□□□ -1.26
VPS54-203ENST00000409558 KTN1-AS1Q86SY8 53 aa7.17□□□□□ -1.26
VPS54-203ENST00000409558 RYR3Q15413 4870 aa7.17□□□□□ -1.26
VPS54-203ENST00000409558 SPATA8Q6RVD6 105 aa7.13□□□□□ -1.27
VPS54-203ENST00000409558 KRTAP3-1Q9BYR8 98 aa7.13□□□□□ -1.27
VPS54-203ENST00000409558 A8MUU9 505 aa7.12□□□□□ -1.27
VPS54-203ENST00000409558 C20orf166-AS1Q96NR2 134 aa7.11□□□□□ -1.27
VPS54-203ENST00000409558 KRTAP17-1Q9BYP8 105 aa7.1□□□□□ -1.27
VPS54-203ENST00000409558 PKHD1L1Q86WI1 4243 aa7.1□□□□□ -1.27
VPS54-203ENST00000409558 RYR1P21817 5038 aa7.09□□□□□ -1.27
VPS54-203ENST00000409558 RBM12B-AS1Q9P1G2 102 aa7.09□□□□□ -1.27
VPS54-203ENST00000409558 HSPG2P98160 4391 aa7.07□□□□□ -1.28
VPS54-203ENST00000409558 RPS29P62273 56 aaKnown RBP7.07□□□□□ -1.28
VPS54-203ENST00000409558 CRIPTQ9P021 101 aa7.06□□□□□ -1.28
VPS54-203ENST00000409558 A0A0D9SG42 100 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms