RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CELSR2Q9HCU4 2923 aa3.9□□□□□ -1.78
UPF2-203ENST00000397053 PP632Q6XCG6 107 aa3.9□□□□□ -1.78
UPF2-203ENST00000397053 KRTAP7-1Q8IUC3 87 aa3.89□□□□□ -1.79
UPF2-203ENST00000397053 PDZD2O15018 2839 aa3.89□□□□□ -1.79
UPF2-203ENST00000397053 XP32Q5T750 250 aa3.88□□□□□ -1.79
UPF2-203ENST00000397053 PRUNE2Q8WUY3 3088 aa3.87□□□□□ -1.79
UPF2-203ENST00000397053 LAMA3Q16787 3333 aa3.86□□□□□ -1.79
UPF2-203ENST00000397053 BRCA2P51587 3418 aa3.85□□□□□ -1.79
UPF2-203ENST00000397053 PKD1L1Q8TDX9 2849 aa3.85□□□□□ -1.79
UPF2-203ENST00000397053 CHD7Q9P2D1 2997 aa3.84□□□□□ -1.79
UPF2-203ENST00000397053 SRRM2Q9UQ35 2752 aaKnown RBP3.84□□□□□ -1.79
UPF2-203ENST00000397053 TPRXLQ17RH7 258 aa3.84□□□□□ -1.8
UPF2-203ENST00000397053 RANBP2P49792 3224 aaKnown RBP3.83□□□□□ -1.8
UPF2-203ENST00000397053 A6NN06 94 aa3.83□□□□□ -1.8
UPF2-203ENST00000397053 MKI67P46013 3256 aaKnown RBP3.82□□□□□ -1.8
UPF2-203ENST00000397053 HTTP42858 3142 aa3.82□□□□□ -1.8
UPF2-203ENST00000397053 DCHS2Q6V1P9 2916 aa3.81□□□□□ -1.8
UPF2-203ENST00000397053 LAMA1P25391 3075 aa3.81□□□□□ -1.8
UPF2-203ENST00000397053 P0C880 135 aa3.8□□□□□ -1.8
UPF2-203ENST00000397053 FREM2Q5SZK8 3169 aa3.8□□□□□ -1.8
UPF2-203ENST00000397053 USP34Q70CQ2 3546 aa3.78□□□□□ -1.8
UPF2-203ENST00000397053 KRTAP1-4P0C5Y4 121 aa3.78□□□□□ -1.8
UPF2-203ENST00000397053 COL12A1Q99715 3063 aa3.78□□□□□ -1.8
UPF2-203ENST00000397053 XIRP2A4UGR9 3374 aa3.75□□□□□ -1.81
UPF2-203ENST00000397053 LRBAP50851 2863 aa3.74□□□□□ -1.81
UPF2-203ENST00000397053 ATMQ13315 3056 aa3.74□□□□□ -1.81
UPF2-203ENST00000397053 VWFP04275 2813 aa3.73□□□□□ -1.81
UPF2-203ENST00000397053 FRYLO94915 3013 aa3.73□□□□□ -1.81
UPF2-203ENST00000397053 FBN3Q75N90 2809 aa3.73□□□□□ -1.81
UPF2-203ENST00000397053 KRTAP13-3Q3SY46 172 aa3.71□□□□□ -1.82
UPF2-203ENST00000397053 TNRC18O15417 2968 aaPredicted RBP3.7□□□□□ -1.82
UPF2-203ENST00000397053 BOD1L1Q8NFC6 3051 aa3.69□□□□□ -1.82
UPF2-203ENST00000397053 DMXL1Q9Y485 3027 aa3.69□□□□□ -1.82
UPF2-203ENST00000397053 UNC80Q8N2C7 3258 aa3.69□□□□□ -1.82
UPF2-203ENST00000397053 VCANP13611 3396 aa3.68□□□□□ -1.82
UPF2-203ENST00000397053 ZZEF1O43149 2961 aa3.67□□□□□ -1.82
UPF2-203ENST00000397053 TGP01266 2768 aa3.67□□□□□ -1.82
UPF2-203ENST00000397053 VPS13AQ96RL7 3174 aa3.65□□□□□ -1.82
UPF2-203ENST00000397053 CDH23Q9H251 3354 aa3.65□□□□□ -1.83
UPF2-203ENST00000397053 H0YAA0 97 aa3.65□□□□□ -1.83
UPF2-203ENST00000397053 ZANQ9Y493 2812 aa3.62□□□□□ -1.83
UPF2-203ENST00000397053 EYSQ5T1H1 3165 aa3.61□□□□□ -1.83
UPF2-203ENST00000397053 SZT2Q5T011 3432 aa3.56□□□□□ -1.84
UPF2-203ENST00000397053 NBEAQ8NFP9 2946 aa3.56□□□□□ -1.84
UPF2-203ENST00000397053 DNAH14Q0VDD8 3507 aa3.55□□□□□ -1.84
UPF2-203ENST00000397053 SPEGQ15772 3267 aa3.55□□□□□ -1.84
UPF2-203ENST00000397053 KRTAP12-2P59991 146 aa3.54□□□□□ -1.84
UPF2-203ENST00000397053 ADGRG4Q8IZF6 3080 aa3.53□□□□□ -1.84
UPF2-203ENST00000397053 MXRA5Q9NR99 2828 aa3.52□□□□□ -1.85
UPF2-203ENST00000397053 SPTBN5Q9NRC6 3674 aaKnown RBP3.51□□□□□ -1.85
UPF2-203ENST00000397053 FBN2P35556 2912 aa3.5□□□□□ -1.85
UPF2-203ENST00000397053 MUC3AQ02505 3323 aa3.5□□□□□ -1.85
UPF2-203ENST00000397053 CELSR1Q9NYQ6 3014 aa3.5□□□□□ -1.85
UPF2-203ENST00000397053 KRTAP15-1Q3LI76 137 aa3.5□□□□□ -1.85
UPF2-203ENST00000397053 KRTAP13-4Q3LI77 160 aa3.5□□□□□ -1.85
UPF2-203ENST00000397053 MYO15AQ9UKN7 3530 aa3.49□□□□□ -1.85
UPF2-203ENST00000397053 CFAP47Q6ZTR5 3102 aa3.48□□□□□ -1.85
UPF2-203ENST00000397053 COL6A3P12111 3177 aa3.47□□□□□ -1.85
UPF2-203ENST00000397053 CELSR3Q9NYQ7 3312 aa3.42□□□□□ -1.86
UPF2-203ENST00000397053 CRCT1Q9UGL9 99 aa3.42□□□□□ -1.86
UPF2-203ENST00000397053 WDFY3Q8IZQ1 3526 aa3.42□□□□□ -1.86
UPF2-203ENST00000397053 KRTAP12-1P59990 96 aa3.41□□□□□ -1.86
UPF2-203ENST00000397053 COL7A1Q02388 2944 aa3.39□□□□□ -1.87
UPF2-203ENST00000397053 LOC400499M0QZD8 3231 aa3.33□□□□□ -1.88
UPF2-203ENST00000397053 FBN1P35555 2871 aaKnown RBP3.32□□□□□ -1.88
UPF2-203ENST00000397053 DMDP11532 3685 aa3.3□□□□□ -1.88
UPF2-203ENST00000397053 KRTAP10-12P60413 245 aa3.3□□□□□ -1.88
UPF2-203ENST00000397053 MEGF8Q7Z7M0 2845 aa3.29□□□□□ -1.88
UPF2-203ENST00000397053 KRTAP3-1Q9BYR8 98 aa3.29□□□□□ -1.88
UPF2-203ENST00000397053 ASPMQ8IZT6 3477 aa3.26□□□□□ -1.89
UPF2-203ENST00000397053 DCHS1Q96JQ0 3298 aa3.26□□□□□ -1.89
UPF2-203ENST00000397053 MT1HL1P0DM35 61 aa3.23□□□□□ -1.89
UPF2-203ENST00000397053 KRTAP10-6P60371 365 aaPredicted RBP3.22□□□□□ -1.89
UPF2-203ENST00000397053 HRNRQ86YZ3 2850 aaPredicted RBP3.21□□□□□ -1.9
UPF2-203ENST00000397053 KRTAP12-3P60328 96 aa3.19□□□□□ -1.9
UPF2-203ENST00000397053 LAMA5O15230 3695 aa3.19□□□□□ -1.9
UPF2-203ENST00000397053 INE1O15225 51 aa3.18□□□□□ -1.9
UPF2-203ENST00000397053 LORP23490 312 aaPredicted RBP3.15□□□□□ -1.91
UPF2-203ENST00000397053 KRTAP4-5Q9BYR2 181 aa3.15□□□□□ -1.91
UPF2-203ENST00000397053 ZFHX4Q86UP3 3567 aa3.15□□□□□ -1.91
UPF2-203ENST00000397053 KRTAP8-1Q8IUC2 63 aa3.15□□□□□ -1.91
UPF2-203ENST00000397053 KRTAP10-5P60370 271 aa3.12□□□□□ -1.91
UPF2-203ENST00000397053 SPENQ96T58 3664 aaKnown RBP3.11□□□□□ -1.91
UPF2-203ENST00000397053 SMG1Q96Q15 3661 aaKnown RBP3.08□□□□□ -1.92
UPF2-203ENST00000397053 RELNP78509 3460 aa3.07□□□□□ -1.92
UPF2-203ENST00000397053 ZFHX3Q15911 3703 aa3.07□□□□□ -1.92
UPF2-203ENST00000397053 OTOGQ6ZRI0 2925 aa3.07□□□□□ -1.92
UPF2-203ENST00000397053 LCE3AQ5TA76 89 aa3.06□□□□□ -1.92
UPF2-203ENST00000397053 KRTAP3-2Q9BYR7 98 aa3.06□□□□□ -1.92
UPF2-203ENST00000397053 CSMD1Q96PZ7 3565 aa3.05□□□□□ -1.92
UPF2-203ENST00000397053 BSNQ9UPA5 3926 aa3.04□□□□□ -1.92
UPF2-203ENST00000397053 KRTAP3-3Q9BYR6 98 aa3.04□□□□□ -1.92
UPF2-203ENST00000397053 SVEP1Q4LDE5 3571 aa3□□□□□ -1.93
UPF2-203ENST00000397053 CUBNO60494 3623 aa3□□□□□ -1.93
UPF2-203ENST00000397053 KRTAP23-1A1A580 65 aa3□□□□□ -1.93
UPF2-203ENST00000397053 KRTAP10-4P60372 401 aaPredicted RBP2.98□□□□□ -1.93
UPF2-203ENST00000397053 KRTAP10-7P60409 375 aaPredicted RBP2.94□□□□□ -1.94
UPF2-203ENST00000397053 SPRR2FQ96RM1 72 aa2.94□□□□□ -1.94
UPF2-203ENST00000397053 ANK3Q12955 4377 aaKnown RBP2.92□□□□□ -1.94
UPF2-203ENST00000397053 CSMD2Q7Z408 3487 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms