RNA–Protein interactions for RNA: ENST00000379016.7

HIPK3-202, Transcript of homeodomain interacting protein kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HIPK3, Length 7,345 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3-202ENST00000379016 KRTAP12-2P59991 146 aa6.95□□□□□ -1.3
HIPK3-202ENST00000379016 MAP1AP78559 2803 aaPredicted RBP6.95□□□□□ -1.3
HIPK3-202ENST00000379016 COL6A3P12111 3177 aa6.94□□□□□ -1.3
HIPK3-202ENST00000379016 DMXL2Q8TDJ6 3036 aa6.94□□□□□ -1.3
HIPK3-202ENST00000379016 SPEGQ15772 3267 aa6.92□□□□□ -1.3
HIPK3-202ENST00000379016 TRANK1O15050 2925 aa6.9□□□□□ -1.31
HIPK3-202ENST00000379016 UBR5O95071 2799 aaPredicted RBP6.89□□□□□ -1.31
HIPK3-202ENST00000379016 HTTP42858 3142 aa6.88□□□□□ -1.31
HIPK3-202ENST00000379016 DSPP15924 2871 aaKnown RBP6.87□□□□□ -1.31
HIPK3-202ENST00000379016 CRCT1Q9UGL9 99 aa6.85□□□□□ -1.31
HIPK3-202ENST00000379016 KALRNO60229 2985 aa6.84□□□□□ -1.31
HIPK3-202ENST00000379016 ASH1LQ9NR48 2969 aaKnown RBP6.84□□□□□ -1.31
HIPK3-202ENST00000379016 UTP20O75691 2785 aaKnown RBP6.83□□□□□ -1.32
HIPK3-202ENST00000379016 KRTAP13-1Q8IUC0 172 aa6.81□□□□□ -1.32
HIPK3-202ENST00000379016 ZNF292O60281 2723 aa6.81□□□□□ -1.32
HIPK3-202ENST00000379016 KRTAP15-1Q3LI76 137 aa6.8□□□□□ -1.32
HIPK3-202ENST00000379016 TACC2O95359 2948 aa6.76□□□□□ -1.33
HIPK3-202ENST00000379016 TPRXLQ17RH7 258 aa6.76□□□□□ -1.33
HIPK3-202ENST00000379016 COL12A1Q99715 3063 aa6.75□□□□□ -1.33
HIPK3-202ENST00000379016 LAMA1P25391 3075 aa6.74□□□□□ -1.33
HIPK3-202ENST00000379016 HIVEP1P15822 2718 aa6.74□□□□□ -1.33
HIPK3-202ENST00000379016 LRBAP50851 2863 aa6.66□□□□□ -1.34
HIPK3-202ENST00000379016 ATMQ13315 3056 aa6.65□□□□□ -1.35
HIPK3-202ENST00000379016 BOD1L1Q8NFC6 3051 aa6.63□□□□□ -1.35
HIPK3-202ENST00000379016 CHD9Q3L8U1 2897 aa6.62□□□□□ -1.35
HIPK3-202ENST00000379016 ITPR1Q14643 2758 aa6.6□□□□□ -1.35
HIPK3-202ENST00000379016 KRTAP13-4Q3LI77 160 aa6.58□□□□□ -1.36
HIPK3-202ENST00000379016 KRTAP1-4P0C5Y4 121 aa6.58□□□□□ -1.36
HIPK3-202ENST00000379016 TENM3Q9P273 2699 aa6.57□□□□□ -1.36
HIPK3-202ENST00000379016 KRTAP13-3Q3SY46 172 aa6.55□□□□□ -1.36
HIPK3-202ENST00000379016 ASPMQ8IZT6 3477 aa6.53□□□□□ -1.36
HIPK3-202ENST00000379016 TNRC18O15417 2968 aaPredicted RBP6.53□□□□□ -1.36
HIPK3-202ENST00000379016 SPTBN5Q9NRC6 3674 aaKnown RBP6.52□□□□□ -1.37
HIPK3-202ENST00000379016 FRYLO94915 3013 aa6.52□□□□□ -1.37
HIPK3-202ENST00000379016 MYO15AQ9UKN7 3530 aa6.51□□□□□ -1.37
HIPK3-202ENST00000379016 TENM1Q9UKZ4 2725 aa6.51□□□□□ -1.37
HIPK3-202ENST00000379016 ZFHX4Q86UP3 3567 aa6.5□□□□□ -1.37
HIPK3-202ENST00000379016 ADGRG4Q8IZF6 3080 aa6.48□□□□□ -1.37
HIPK3-202ENST00000379016 ZZEF1O43149 2961 aa6.47□□□□□ -1.37
HIPK3-202ENST00000379016 USP34Q70CQ2 3546 aa6.47□□□□□ -1.37
HIPK3-202ENST00000379016 TENM4Q6N022 2769 aa6.45□□□□□ -1.38
HIPK3-202ENST00000379016 CELSR2Q9HCU4 2923 aa6.43□□□□□ -1.38
HIPK3-202ENST00000379016 FLNCQ14315 2725 aa6.41□□□□□ -1.38
HIPK3-202ENST00000379016 EYSQ5T1H1 3165 aa6.41□□□□□ -1.38
HIPK3-202ENST00000379016 LOC400499M0QZD8 3231 aa6.4□□□□□ -1.39
HIPK3-202ENST00000379016 CELSR1Q9NYQ6 3014 aa6.39□□□□□ -1.39
HIPK3-202ENST00000379016 TGP01266 2768 aa6.39□□□□□ -1.39
HIPK3-202ENST00000379016 KRTAP12-1P59990 96 aa6.38□□□□□ -1.39
HIPK3-202ENST00000379016 PDZD2O15018 2839 aa6.38□□□□□ -1.39
HIPK3-202ENST00000379016 INE1O15225 51 aa6.35□□□□□ -1.39
HIPK3-202ENST00000379016 KRTAP21-3Q3LHN1 58 aa6.33□□□□□ -1.4
HIPK3-202ENST00000379016 TENM2Q9NT68 2774 aa6.33□□□□□ -1.4
HIPK3-202ENST00000379016 WDFY3Q8IZQ1 3526 aa6.31□□□□□ -1.4
HIPK3-202ENST00000379016 NBEAQ8NFP9 2946 aa6.31□□□□□ -1.4
HIPK3-202ENST00000379016 NF1P21359 2839 aa6.3□□□□□ -1.4
HIPK3-202ENST00000379016 DCHS1Q96JQ0 3298 aa6.3□□□□□ -1.4
HIPK3-202ENST00000379016 DCHS2Q6V1P9 2916 aa6.29□□□□□ -1.4
HIPK3-202ENST00000379016 KRTAP10-6P60371 365 aaPredicted RBP6.29□□□□□ -1.4
HIPK3-202ENST00000379016 NBPF19A0A087WUL8 3843 aa6.25□□□□□ -1.41
HIPK3-202ENST00000379016 KRTAP10-5P60370 271 aa6.18□□□□□ -1.42
HIPK3-202ENST00000379016 VWFP04275 2813 aa6.18□□□□□ -1.42
HIPK3-202ENST00000379016 PKD1L1Q8TDX9 2849 aa6.18□□□□□ -1.42
HIPK3-202ENST00000379016 KRTAP10-12P60413 245 aa6.17□□□□□ -1.42
HIPK3-202ENST00000379016 NIPBLQ6KC79 2804 aaeCLIP6.17□□□□□ -1.42
HIPK3-202ENST00000379016 DMXL1Q9Y485 3027 aa6.17□□□□□ -1.42
HIPK3-202ENST00000379016 ZANQ9Y493 2812 aa6.12□□□□□ -1.43
HIPK3-202ENST00000379016 CSMD1Q96PZ7 3565 aa6.1□□□□□ -1.43
HIPK3-202ENST00000379016 LAMA5O15230 3695 aa6.09□□□□□ -1.43
HIPK3-202ENST00000379016 RELNP78509 3460 aa6.07□□□□□ -1.44
HIPK3-202ENST00000379016 FBN2P35556 2912 aa6.02□□□□□ -1.45
HIPK3-202ENST00000379016 SRRM2Q9UQ35 2752 aaKnown RBP5.98□□□□□ -1.45
HIPK3-202ENST00000379016 KRTAP12-3P60328 96 aa5.94□□□□□ -1.46
HIPK3-202ENST00000379016 LORP23490 312 aaPredicted RBP5.93□□□□□ -1.46
HIPK3-202ENST00000379016 CUBNO60494 3623 aa5.91□□□□□ -1.46
HIPK3-202ENST00000379016 KRTAP3-1Q9BYR8 98 aa5.9□□□□□ -1.47
HIPK3-202ENST00000379016 ZFHX3Q15911 3703 aa5.9□□□□□ -1.47
HIPK3-202ENST00000379016 SMG1Q96Q15 3661 aaKnown RBP5.86□□□□□ -1.47
HIPK3-202ENST00000379016 LCE3AQ5TA76 89 aa5.84□□□□□ -1.47
HIPK3-202ENST00000379016 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
HIPK3-202ENST00000379016 MEGF8Q7Z7M0 2845 aa5.81□□□□□ -1.48
HIPK3-202ENST00000379016 SPENQ96T58 3664 aaKnown RBP5.8□□□□□ -1.48
HIPK3-202ENST00000379016 KRTAP4-5Q9BYR2 181 aa5.78□□□□□ -1.48
HIPK3-202ENST00000379016 KRTAP10-7P60409 375 aaPredicted RBP5.76□□□□□ -1.49
HIPK3-202ENST00000379016 COL7A1Q02388 2944 aa5.75□□□□□ -1.49
HIPK3-202ENST00000379016 HRNRQ86YZ3 2850 aaPredicted RBP5.75□□□□□ -1.49
HIPK3-202ENST00000379016 MXRA5Q9NR99 2828 aa5.74□□□□□ -1.49
HIPK3-202ENST00000379016 DMDP11532 3685 aa5.73□□□□□ -1.49
HIPK3-202ENST00000379016 SVEP1Q4LDE5 3571 aa5.73□□□□□ -1.49
HIPK3-202ENST00000379016 MUC3AQ02505 3323 aa5.72□□□□□ -1.49
HIPK3-202ENST00000379016 CSMD2Q7Z408 3487 aa5.7□□□□□ -1.5
HIPK3-202ENST00000379016 MT1HL1P0DM35 61 aa5.55□□□□□ -1.52
HIPK3-202ENST00000379016 OTOGQ6ZRI0 2925 aa5.54□□□□□ -1.52
HIPK3-202ENST00000379016 CSMD3Q7Z407 3707 aa5.52□□□□□ -1.53
HIPK3-202ENST00000379016 FBN3Q75N90 2809 aa5.52□□□□□ -1.53
HIPK3-202ENST00000379016 FBN1P35555 2871 aaKnown RBP5.51□□□□□ -1.53
HIPK3-202ENST00000379016 KRTAP3-2Q9BYR7 98 aa5.45□□□□□ -1.54
HIPK3-202ENST00000379016 KRTAP3-3Q9BYR6 98 aa5.44□□□□□ -1.54
HIPK3-202ENST00000379016 TRRAPQ9Y4A5 3859 aa5.44□□□□□ -1.54
HIPK3-202ENST00000379016 SPRR2FQ96RM1 72 aa5.39□□□□□ -1.55
HIPK3-202ENST00000379016 KRTAP23-1A1A580 65 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms