RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 CSAG1Q6PB30 78 aa9.04□□□□□ -0.96
NPHP4-201ENST00000378156 KRTAP10-1P60331 282 aa9.04□□□□□ -0.96
NPHP4-201ENST00000378156 LCE6AA0A183 80 aa9.03□□□□□ -0.96
NPHP4-201ENST00000378156 ZCCHC13Q8WW36 166 aaKnown RBP9.03□□□□□ -0.96
NPHP4-201ENST00000378156 PANO1I0J062 215 aa9.03□□□□□ -0.96
NPHP4-201ENST00000378156 Q6ZSA8 131 aa9.02□□□□□ -0.97
NPHP4-201ENST00000378156 Q5W150 140 aa9.01□□□□□ -0.97
NPHP4-201ENST00000378156 Q6ZR54 194 aa9.01□□□□□ -0.97
NPHP4-201ENST00000378156 ASB16-AS1Q495Z4 193 aa9□□□□□ -0.97
NPHP4-201ENST00000378156 LINC00483Q53H64 154 aa9□□□□□ -0.97
NPHP4-201ENST00000378156 A0A0A0MQY5 61 aa8.98□□□□□ -0.97
NPHP4-201ENST00000378156 CAMK2N1Q7Z7J9 78 aa8.97□□□□□ -0.97
NPHP4-201ENST00000378156 DMBT1Q9UGM3 2413 aaPredicted RBP8.97□□□□□ -0.97
NPHP4-201ENST00000378156 KRTAP7-1Q8IUC3 87 aa8.96□□□□□ -0.98
NPHP4-201ENST00000378156 SMG1Q96Q15 3661 aaKnown RBP8.93□□□□□ -0.98
NPHP4-201ENST00000378156 KRTAP11-1Q8IUC1 163 aa8.92□□□□□ -0.98
NPHP4-201ENST00000378156 KRTAP29-1A8MX34 341 aaPredicted RBP8.9□□□□□ -0.98
NPHP4-201ENST00000378156 CSMD1Q96PZ7 3565 aa8.89□□□□□ -0.99
NPHP4-201ENST00000378156 Q5VSD8 79 aa8.89□□□□□ -0.99
NPHP4-201ENST00000378156 RPL37P61927 97 aaKnown RBP8.87□□□□□ -0.99
NPHP4-201ENST00000378156 ROMO1P60602 79 aa8.85□□□□□ -0.99
NPHP4-201ENST00000378156 S4R3F8 94 aa8.85□□□□□ -0.99
NPHP4-201ENST00000378156 Q6ZRN7 208 aaPredicted RBP8.85□□□□□ -0.99
NPHP4-201ENST00000378156 CELSR1Q9NYQ6 3014 aa8.79□□□□□ -1
NPHP4-201ENST00000378156 A0A087X002 238 aa8.79□□□□□ -1
NPHP4-201ENST00000378156 H1FX-AS1Q4G0G2 97 aa8.78□□□□□ -1
NPHP4-201ENST00000378156 NOTCH2NLQ7Z3S9 236 aa8.78□□□□□ -1
NPHP4-201ENST00000378156 SPATA8Q6RVD6 105 aa8.75□□□□□ -1.01
NPHP4-201ENST00000378156 R4GN34 69 aa8.74□□□□□ -1.01
NPHP4-201ENST00000378156 SVEP1Q4LDE5 3571 aa8.72□□□□□ -1.01
NPHP4-201ENST00000378156 SEC61BP60468 96 aaKnown RBP8.71□□□□□ -1.01
NPHP4-201ENST00000378156 A6NN06 94 aa8.7□□□□□ -1.02
NPHP4-201ENST00000378156 M0R2T5 61 aa8.7□□□□□ -1.02
NPHP4-201ENST00000378156 TENM3Q9P273 2699 aa8.68□□□□□ -1.02
NPHP4-201ENST00000378156 KRTAP13-1Q8IUC0 172 aa8.67□□□□□ -1.02
NPHP4-201ENST00000378156 KRTAP21-3Q3LHN1 58 aa8.65□□□□□ -1.02
NPHP4-201ENST00000378156 TENM1Q9UKZ4 2725 aa8.61□□□□□ -1.03
NPHP4-201ENST00000378156 KRTAP16-1A8MUX0 517 aa8.58□□□□□ -1.04
NPHP4-201ENST00000378156 KRTAP25-1Q3LHN0 102 aa8.57□□□□□ -1.04
NPHP4-201ENST00000378156 M0QZ58 72 aa8.55□□□□□ -1.04
NPHP4-201ENST00000378156 CUBNO60494 3623 aa8.55□□□□□ -1.04
NPHP4-201ENST00000378156 RPS29P62273 56 aaKnown RBP8.55□□□□□ -1.04
NPHP4-201ENST00000378156 KRTAP13-2Q52LG2 175 aa8.55□□□□□ -1.04
NPHP4-201ENST00000378156 VWFP04275 2813 aa8.55□□□□□ -1.04
NPHP4-201ENST00000378156 PDZD2O15018 2839 aa8.52□□□□□ -1.05
NPHP4-201ENST00000378156 SPENQ96T58 3664 aaKnown RBP8.5□□□□□ -1.05
NPHP4-201ENST00000378156 FBN1P35555 2871 aaKnown RBP8.47□□□□□ -1.05
NPHP4-201ENST00000378156 A8MU10 97 aa8.46□□□□□ -1.05
NPHP4-201ENST00000378156 ADM2Q7Z4H4 148 aa8.46□□□□□ -1.05
NPHP4-201ENST00000378156 NBPF19A0A087WUL8 3843 aa8.42□□□□□ -1.06
NPHP4-201ENST00000378156 OTOGQ6ZRI0 2925 aa8.42□□□□□ -1.06
NPHP4-201ENST00000378156 PKD1L1Q8TDX9 2849 aa8.38□□□□□ -1.07
NPHP4-201ENST00000378156 CSMD2Q7Z408 3487 aa8.37□□□□□ -1.07
NPHP4-201ENST00000378156 TENM2Q9NT68 2774 aa8.36□□□□□ -1.07
NPHP4-201ENST00000378156 BSNQ9UPA5 3926 aa8.34□□□□□ -1.07
NPHP4-201ENST00000378156 NDUFAF8A1L188 74 aa8.32□□□□□ -1.08
NPHP4-201ENST00000378156 PLAC4Q8WY50 150 aa8.3□□□□□ -1.08
NPHP4-201ENST00000378156 TGP01266 2768 aa8.27□□□□□ -1.09
NPHP4-201ENST00000378156 ZFHX3Q15911 3703 aa8.27□□□□□ -1.09
NPHP4-201ENST00000378156 KRTAP1-4P0C5Y4 121 aa8.23□□□□□ -1.09
NPHP4-201ENST00000378156 A8MUU9 505 aa8.21□□□□□ -1.09
NPHP4-201ENST00000378156 C20orf166-AS1Q96NR2 134 aa8.18□□□□□ -1.1
NPHP4-201ENST00000378156 ANK3Q12955 4377 aaKnown RBP8.11□□□□□ -1.11
NPHP4-201ENST00000378156 TRRAPQ9Y4A5 3859 aa8.09□□□□□ -1.11
NPHP4-201ENST00000378156 TNP1P09430 55 aa8.04□□□□□ -1.12
NPHP4-201ENST00000378156 XP32Q5T750 250 aa8.02□□□□□ -1.13
NPHP4-201ENST00000378156 PP632Q6XCG6 107 aa8.01□□□□□ -1.13
NPHP4-201ENST00000378156 VPS13CQ709C8 3753 aa7.95□□□□□ -1.14
NPHP4-201ENST00000378156 C10orf95Q9H7T3 257 aa7.94□□□□□ -1.14
NPHP4-201ENST00000378156 SRRM2Q9UQ35 2752 aaKnown RBP7.94□□□□□ -1.14
NPHP4-201ENST00000378156 KRTAP13-3Q3SY46 172 aa7.93□□□□□ -1.14
NPHP4-201ENST00000378156 FBN3Q75N90 2809 aa7.92□□□□□ -1.14
NPHP4-201ENST00000378156 H0YAA0 97 aa7.9□□□□□ -1.15
NPHP4-201ENST00000378156 TPRXLQ17RH7 258 aa7.9□□□□□ -1.15
NPHP4-201ENST00000378156 P0C880 135 aa7.87□□□□□ -1.15
NPHP4-201ENST00000378156 A0A1B0GVY2 172 aa7.85□□□□□ -1.15
NPHP4-201ENST00000378156 KRTAP10-8P60410 259 aa7.79□□□□□ -1.16
NPHP4-201ENST00000378156 MEGF8Q7Z7M0 2845 aa7.77□□□□□ -1.17
NPHP4-201ENST00000378156 ZNF469Q96JG9 3925 aaPredicted RBP7.72□□□□□ -1.17
NPHP4-201ENST00000378156 COL7A1Q02388 2944 aa7.63□□□□□ -1.19
NPHP4-201ENST00000378156 KRTAP10-10P60014 251 aa7.53□□□□□ -1.2
NPHP4-201ENST00000378156 HUWE1Q7Z6Z7 4374 aaKnown RBP7.53□□□□□ -1.2
NPHP4-201ENST00000378156 KRTAP3-1Q9BYR8 98 aa7.52□□□□□ -1.2
NPHP4-201ENST00000378156 AKAP9Q99996 3911 aa7.52□□□□□ -1.21
NPHP4-201ENST00000378156 CSMD3Q7Z407 3707 aa7.49□□□□□ -1.21
NPHP4-201ENST00000378156 KRTAP12-2P59991 146 aa7.35□□□□□ -1.23
NPHP4-201ENST00000378156 PRO2289Q9P1D8 64 aa7.34□□□□□ -1.23
NPHP4-201ENST00000378156 KRTAP13-4Q3LI77 160 aa7.28□□□□□ -1.24
NPHP4-201ENST00000378156 KRTAP12-1P59990 96 aa7.25□□□□□ -1.25
NPHP4-201ENST00000378156 KRTAP10-6P60371 365 aaPredicted RBP7.25□□□□□ -1.25
NPHP4-201ENST00000378156 DNAH9Q9NYC9 4486 aa7.23□□□□□ -1.25
NPHP4-201ENST00000378156 MT1HL1P0DM35 61 aa7.21□□□□□ -1.25
NPHP4-201ENST00000378156 KRTAP10-4P60372 401 aaPredicted RBP7.16□□□□□ -1.26
NPHP4-201ENST00000378156 PLECQ15149 4684 aaKnown RBP7.16□□□□□ -1.26
NPHP4-201ENST00000378156 DNAH10Q8IVF4 4471 aa7.12□□□□□ -1.27
NPHP4-201ENST00000378156 DNAH1Q9P2D7 4330 aa7.09□□□□□ -1.28
NPHP4-201ENST00000378156 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
NPHP4-201ENST00000378156 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
NPHP4-201ENST00000378156 DNAH11Q96DT5 4516 aa7.04□□□□□ -1.28
NPHP4-201ENST00000378156 DNAH5Q8TE73 4624 aa7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms