RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 AKAP9Q99996 3911 aa3.91□□□□□ -1.78
SMC1A-202ENST00000375340 DMBT1Q9UGM3 2413 aaPredicted RBP3.91□□□□□ -1.78
SMC1A-202ENST00000375340 A0A087X002 238 aa3.91□□□□□ -1.78
SMC1A-202ENST00000375340 NOTCH2NLQ7Z3S9 236 aa3.91□□□□□ -1.78
SMC1A-202ENST00000375340 KRTAP29-1A8MX34 341 aaPredicted RBP3.9□□□□□ -1.78
SMC1A-202ENST00000375340 CAMK2N1Q7Z7J9 78 aa3.9□□□□□ -1.78
SMC1A-202ENST00000375340 ZCCHC13Q8WW36 166 aaKnown RBP3.9□□□□□ -1.78
SMC1A-202ENST00000375340 CRYBG3Q68DQ2 2970 aa3.9□□□□□ -1.79
SMC1A-202ENST00000375340 LINC00483Q53H64 154 aa3.9□□□□□ -1.79
SMC1A-202ENST00000375340 NBPF19A0A087WUL8 3843 aa3.89□□□□□ -1.79
SMC1A-202ENST00000375340 TENM3Q9P273 2699 aa3.88□□□□□ -1.79
SMC1A-202ENST00000375340 A8MU10 97 aa3.88□□□□□ -1.79
SMC1A-202ENST00000375340 KRTAP10-2P60368 255 aa3.88□□□□□ -1.79
SMC1A-202ENST00000375340 H3BS24 57 aa3.87□□□□□ -1.79
SMC1A-202ENST00000375340 Q6ZR54 194 aa3.86□□□□□ -1.79
SMC1A-202ENST00000375340 CELSR1Q9NYQ6 3014 aa3.86□□□□□ -1.79
SMC1A-202ENST00000375340 CSAG1Q6PB30 78 aa3.85□□□□□ -1.79
SMC1A-202ENST00000375340 TENM1Q9UKZ4 2725 aa3.85□□□□□ -1.79
SMC1A-202ENST00000375340 LCE6AA0A183 80 aa3.84□□□□□ -1.79
SMC1A-202ENST00000375340 KRTAP10-1P60331 282 aa3.84□□□□□ -1.79
SMC1A-202ENST00000375340 CRIPTQ9P021 101 aa3.84□□□□□ -1.79
SMC1A-202ENST00000375340 A0A1B0GU33 70 aa3.84□□□□□ -1.8
SMC1A-202ENST00000375340 LINC01554Q52M75 96 aa3.83□□□□□ -1.8
SMC1A-202ENST00000375340 LUZP6Q538Z0 58 aa3.83□□□□□ -1.8
SMC1A-202ENST00000375340 DMAC1Q96GE9 116 aa3.82□□□□□ -1.8
SMC1A-202ENST00000375340 VWFP04275 2813 aa3.8□□□□□ -1.8
SMC1A-202ENST00000375340 Q6ZRN7 208 aaPredicted RBP3.79□□□□□ -1.8
SMC1A-202ENST00000375340 TENM4Q6N022 2769 aa3.79□□□□□ -1.8
SMC1A-202ENST00000375340 A6NN06 94 aa3.78□□□□□ -1.8
SMC1A-202ENST00000375340 S4R3F8 94 aa3.78□□□□□ -1.8
SMC1A-202ENST00000375340 CSMD2Q7Z408 3487 aa3.78□□□□□ -1.8
SMC1A-202ENST00000375340 SPATA8Q6RVD6 105 aa3.78□□□□□ -1.81
SMC1A-202ENST00000375340 KRTAP13-1Q8IUC0 172 aa3.78□□□□□ -1.81
SMC1A-202ENST00000375340 ADM2Q7Z4H4 148 aa3.76□□□□□ -1.81
SMC1A-202ENST00000375340 ANK3Q12955 4377 aaKnown RBP3.75□□□□□ -1.81
SMC1A-202ENST00000375340 J3QL48 77 aa3.75□□□□□ -1.81
SMC1A-202ENST00000375340 H1FX-AS1Q4G0G2 97 aa3.74□□□□□ -1.81
SMC1A-202ENST00000375340 PDZD2O15018 2839 aa3.74□□□□□ -1.81
SMC1A-202ENST00000375340 COX6B2Q6YFQ2 88 aa3.74□□□□□ -1.81
SMC1A-202ENST00000375340 KRTAP13-2Q52LG2 175 aa3.74□□□□□ -1.81
SMC1A-202ENST00000375340 A0A0A0MQY5 61 aa3.73□□□□□ -1.81
SMC1A-202ENST00000375340 CUBNO60494 3623 aa3.73□□□□□ -1.81
SMC1A-202ENST00000375340 TGP01266 2768 aa3.72□□□□□ -1.81
SMC1A-202ENST00000375340 TENM2Q9NT68 2774 aa3.7□□□□□ -1.82
SMC1A-202ENST00000375340 Q6ZSA8 131 aa3.7□□□□□ -1.82
SMC1A-202ENST00000375340 Q5VSD8 79 aa3.69□□□□□ -1.82
SMC1A-202ENST00000375340 SEC61BP60468 96 aaKnown RBP3.68□□□□□ -1.82
SMC1A-202ENST00000375340 ROMO1P60602 79 aa3.68□□□□□ -1.82
SMC1A-202ENST00000375340 ZNF469Q96JG9 3925 aaPredicted RBP3.67□□□□□ -1.82
SMC1A-202ENST00000375340 PKD1L1Q8TDX9 2849 aa3.67□□□□□ -1.82
SMC1A-202ENST00000375340 FBN1P35555 2871 aaKnown RBP3.67□□□□□ -1.82
SMC1A-202ENST00000375340 ASB16-AS1Q495Z4 193 aa3.67□□□□□ -1.82
SMC1A-202ENST00000375340 TRRAPQ9Y4A5 3859 aa3.64□□□□□ -1.83
SMC1A-202ENST00000375340 RPL37P61927 97 aaKnown RBP3.63□□□□□ -1.83
SMC1A-202ENST00000375340 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
SMC1A-202ENST00000375340 M0QZ58 72 aa3.59□□□□□ -1.84
SMC1A-202ENST00000375340 R4GN34 69 aa3.57□□□□□ -1.84
SMC1A-202ENST00000375340 KRTAP1-4P0C5Y4 121 aa3.56□□□□□ -1.84
SMC1A-202ENST00000375340 RPS29P62273 56 aaKnown RBP3.56□□□□□ -1.84
SMC1A-202ENST00000375340 NDUFAF8A1L188 74 aa3.55□□□□□ -1.84
SMC1A-202ENST00000375340 KRTAP16-1A8MUX0 517 aa3.55□□□□□ -1.84
SMC1A-202ENST00000375340 CMYA5Q8N3K9 4069 aa3.54□□□□□ -1.84
SMC1A-202ENST00000375340 H0YAA0 97 aa3.54□□□□□ -1.84
SMC1A-202ENST00000375340 ANK2Q01484 3957 aa3.53□□□□□ -1.84
SMC1A-202ENST00000375340 HUWE1Q7Z6Z7 4374 aaKnown RBP3.53□□□□□ -1.84
SMC1A-202ENST00000375340 OTOGQ6ZRI0 2925 aa3.52□□□□□ -1.85
SMC1A-202ENST00000375340 SRRM2Q9UQ35 2752 aaKnown RBP3.52□□□□□ -1.85
SMC1A-202ENST00000375340 A8MUU9 505 aa3.51□□□□□ -1.85
SMC1A-202ENST00000375340 MEGF8Q7Z7M0 2845 aa3.51□□□□□ -1.85
SMC1A-202ENST00000375340 M0R2T5 61 aa3.51□□□□□ -1.85
SMC1A-202ENST00000375340 C20orf166-AS1Q96NR2 134 aa3.51□□□□□ -1.85
SMC1A-202ENST00000375340 CSMD3Q7Z407 3707 aa3.5□□□□□ -1.85
SMC1A-202ENST00000375340 KRTAP13-3Q3SY46 172 aa3.49□□□□□ -1.85
SMC1A-202ENST00000375340 C10orf95Q9H7T3 257 aa3.49□□□□□ -1.85
SMC1A-202ENST00000375340 DNAH3Q8TD57 4116 aa3.44□□□□□ -1.86
SMC1A-202ENST00000375340 XP32Q5T750 250 aa3.43□□□□□ -1.86
SMC1A-202ENST00000375340 PLAC4Q8WY50 150 aa3.43□□□□□ -1.86
SMC1A-202ENST00000375340 FBN3Q75N90 2809 aa3.41□□□□□ -1.86
SMC1A-202ENST00000375340 LYSTQ99698 3801 aa3.4□□□□□ -1.86
SMC1A-202ENST00000375340 COL7A1Q02388 2944 aa3.39□□□□□ -1.87
SMC1A-202ENST00000375340 ALMS1Q8TCU4 4167 aa3.39□□□□□ -1.87
SMC1A-202ENST00000375340 DNAH10Q8IVF4 4471 aa3.38□□□□□ -1.87
SMC1A-202ENST00000375340 P0C880 135 aa3.37□□□□□ -1.87
SMC1A-202ENST00000375340 FRAS1Q86XX4 4008 aa3.35□□□□□ -1.87
SMC1A-202ENST00000375340 A0A1B0GVY2 172 aa3.33□□□□□ -1.88
SMC1A-202ENST00000375340 KRTAP12-2P59991 146 aa3.33□□□□□ -1.88
SMC1A-202ENST00000375340 KRTAP3-1Q9BYR8 98 aa3.33□□□□□ -1.88
SMC1A-202ENST00000375340 DNAH1Q9P2D7 4330 aa3.32□□□□□ -1.88
SMC1A-202ENST00000375340 DNAH7Q8WXX0 4024 aa3.31□□□□□ -1.88
SMC1A-202ENST00000375340 HECTD4Q9Y4D8 3996 aa3.31□□□□□ -1.88
SMC1A-202ENST00000375340 DNAH9Q9NYC9 4486 aa3.29□□□□□ -1.88
SMC1A-202ENST00000375340 KRTAP10-8P60410 259 aa3.27□□□□□ -1.89
SMC1A-202ENST00000375340 TPRXLQ17RH7 258 aa3.27□□□□□ -1.89
SMC1A-202ENST00000375340 KRTAP13-4Q3LI77 160 aa3.26□□□□□ -1.89
SMC1A-202ENST00000375340 KMT2AQ03164 3969 aa3.25□□□□□ -1.89
SMC1A-202ENST00000375340 TNP1P09430 55 aa3.23□□□□□ -1.89
SMC1A-202ENST00000375340 KRTAP21-3Q3LHN1 58 aa3.21□□□□□ -1.9
SMC1A-202ENST00000375340 DYNC2H1Q8NCM8 4307 aaKnown RBP3.21□□□□□ -1.9
SMC1A-202ENST00000375340 KRTAP12-1P59990 96 aa3.21□□□□□ -1.9
SMC1A-202ENST00000375340 PLECQ15149 4684 aaKnown RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 1269.8 ms