RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 WDFY4Q6ZS81 3184 aa5.63□□□□□ -1.51
VCL-202ENST00000372755 HIVEP1P15822 2718 aa5.62□□□□□ -1.51
VCL-202ENST00000372755 LAMA3Q16787 3333 aa5.6□□□□□ -1.51
VCL-202ENST00000372755 KRTAP12-1P59990 96 aa5.58□□□□□ -1.52
VCL-202ENST00000372755 LAMA2P24043 3122 aaKnown RBP5.57□□□□□ -1.52
VCL-202ENST00000372755 LAMA1P25391 3075 aa5.56□□□□□ -1.52
VCL-202ENST00000372755 PRUNE2Q8WUY3 3088 aa5.54□□□□□ -1.52
VCL-202ENST00000372755 TRIOO75962 3097 aa5.54□□□□□ -1.52
VCL-202ENST00000372755 NBEAQ8NFP9 2946 aa5.53□□□□□ -1.52
VCL-202ENST00000372755 MKI67P46013 3256 aaKnown RBP5.53□□□□□ -1.52
VCL-202ENST00000372755 VPS13AQ96RL7 3174 aa5.53□□□□□ -1.52
VCL-202ENST00000372755 KRTAP15-1Q3LI76 137 aa5.52□□□□□ -1.53
VCL-202ENST00000372755 TACC2O95359 2948 aa5.51□□□□□ -1.53
VCL-202ENST00000372755 KALRNO60229 2985 aa5.5□□□□□ -1.53
VCL-202ENST00000372755 LRBAP50851 2863 aa5.5□□□□□ -1.53
VCL-202ENST00000372755 BRCA2P51587 3418 aa5.48□□□□□ -1.53
VCL-202ENST00000372755 ATMQ13315 3056 aa5.48□□□□□ -1.53
VCL-202ENST00000372755 CDH23Q9H251 3354 aa5.48□□□□□ -1.53
VCL-202ENST00000372755 CRYBG3Q68DQ2 2970 aa5.46□□□□□ -1.54
VCL-202ENST00000372755 ASH1LQ9NR48 2969 aaKnown RBP5.45□□□□□ -1.54
VCL-202ENST00000372755 KRTAP3-1Q9BYR8 98 aa5.45□□□□□ -1.54
VCL-202ENST00000372755 ADGRG4Q8IZF6 3080 aa5.43□□□□□ -1.54
VCL-202ENST00000372755 UNC80Q8N2C7 3258 aa5.43□□□□□ -1.54
VCL-202ENST00000372755 DMXL2Q8TDJ6 3036 aa5.41□□□□□ -1.54
VCL-202ENST00000372755 REV3LO60673 3130 aa5.41□□□□□ -1.54
VCL-202ENST00000372755 USP34Q70CQ2 3546 aa5.39□□□□□ -1.55
VCL-202ENST00000372755 TGP01266 2768 aa5.39□□□□□ -1.55
VCL-202ENST00000372755 COL12A1Q99715 3063 aa5.39□□□□□ -1.55
VCL-202ENST00000372755 ZANQ9Y493 2812 aa5.38□□□□□ -1.55
VCL-202ENST00000372755 HRNRQ86YZ3 2850 aaPredicted RBP5.38□□□□□ -1.55
VCL-202ENST00000372755 CELSR2Q9HCU4 2923 aa5.37□□□□□ -1.55
VCL-202ENST00000372755 XIRP2A4UGR9 3374 aa5.37□□□□□ -1.55
VCL-202ENST00000372755 TENM2Q9NT68 2774 aa5.36□□□□□ -1.55
VCL-202ENST00000372755 TENM3Q9P273 2699 aa5.36□□□□□ -1.55
VCL-202ENST00000372755 FREM2Q5SZK8 3169 aa5.35□□□□□ -1.55
VCL-202ENST00000372755 TENM1Q9UKZ4 2725 aa5.35□□□□□ -1.55
VCL-202ENST00000372755 VCANP13611 3396 aa5.34□□□□□ -1.55
VCL-202ENST00000372755 ZZEF1O43149 2961 aa5.34□□□□□ -1.56
VCL-202ENST00000372755 DCHS2Q6V1P9 2916 aa5.33□□□□□ -1.56
VCL-202ENST00000372755 KRTAP10-6P60371 365 aaPredicted RBP5.33□□□□□ -1.56
VCL-202ENST00000372755 FRYLO94915 3013 aa5.32□□□□□ -1.56
VCL-202ENST00000372755 INE1O15225 51 aa5.3□□□□□ -1.56
VCL-202ENST00000372755 DNAH14Q0VDD8 3507 aa5.24□□□□□ -1.57
VCL-202ENST00000372755 EYSQ5T1H1 3165 aa5.24□□□□□ -1.57
VCL-202ENST00000372755 BOD1L1Q8NFC6 3051 aa5.24□□□□□ -1.57
VCL-202ENST00000372755 SZT2Q5T011 3432 aa5.23□□□□□ -1.57
VCL-202ENST00000372755 SPEGQ15772 3267 aa5.22□□□□□ -1.57
VCL-202ENST00000372755 NF1P21359 2839 aa5.22□□□□□ -1.57
VCL-202ENST00000372755 KRTAP10-12P60413 245 aa5.22□□□□□ -1.57
VCL-202ENST00000372755 CELSR3Q9NYQ7 3312 aa5.21□□□□□ -1.58
VCL-202ENST00000372755 MXRA5Q9NR99 2828 aa5.19□□□□□ -1.58
VCL-202ENST00000372755 MYO15AQ9UKN7 3530 aa5.19□□□□□ -1.58
VCL-202ENST00000372755 CRCT1Q9UGL9 99 aa5.16□□□□□ -1.58
VCL-202ENST00000372755 FBN2P35556 2912 aa5.14□□□□□ -1.59
VCL-202ENST00000372755 TNRC18O15417 2968 aaPredicted RBP5.14□□□□□ -1.59
VCL-202ENST00000372755 MT1HL1P0DM35 61 aa5.13□□□□□ -1.59
VCL-202ENST00000372755 COL6A3P12111 3177 aa5.12□□□□□ -1.59
VCL-202ENST00000372755 KRTAP3-2Q9BYR7 98 aa5.11□□□□□ -1.59
VCL-202ENST00000372755 CFAP47Q6ZTR5 3102 aa5.1□□□□□ -1.59
VCL-202ENST00000372755 KRTAP3-3Q9BYR6 98 aa5.08□□□□□ -1.6
VCL-202ENST00000372755 PDZD2O15018 2839 aa5.08□□□□□ -1.6
VCL-202ENST00000372755 CELSR1Q9NYQ6 3014 aa5.07□□□□□ -1.6
VCL-202ENST00000372755 KRTAP12-3P60328 96 aa5.06□□□□□ -1.6
VCL-202ENST00000372755 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
VCL-202ENST00000372755 DMXL1Q9Y485 3027 aa5.03□□□□□ -1.6
VCL-202ENST00000372755 SPTBN5Q9NRC6 3674 aaKnown RBP5.01□□□□□ -1.61
VCL-202ENST00000372755 PKD1L1Q8TDX9 2849 aa4.98□□□□□ -1.61
VCL-202ENST00000372755 LCE3AQ5TA76 89 aa4.96□□□□□ -1.62
VCL-202ENST00000372755 VWFP04275 2813 aa4.94□□□□□ -1.62
VCL-202ENST00000372755 WDFY3Q8IZQ1 3526 aa4.94□□□□□ -1.62
VCL-202ENST00000372755 KRTAP10-4P60372 401 aaPredicted RBP4.91□□□□□ -1.62
VCL-202ENST00000372755 LOC400499M0QZD8 3231 aa4.9□□□□□ -1.63
VCL-202ENST00000372755 KRTAP4-5Q9BYR2 181 aa4.87□□□□□ -1.63
VCL-202ENST00000372755 KRTAP10-5P60370 271 aa4.82□□□□□ -1.64
VCL-202ENST00000372755 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
VCL-202ENST00000372755 ASPMQ8IZT6 3477 aa4.82□□□□□ -1.64
VCL-202ENST00000372755 OTOGQ6ZRI0 2925 aa4.8□□□□□ -1.64
VCL-202ENST00000372755 LORP23490 312 aaPredicted RBP4.78□□□□□ -1.65
VCL-202ENST00000372755 FBN3Q75N90 2809 aa4.77□□□□□ -1.65
VCL-202ENST00000372755 DCHS1Q96JQ0 3298 aa4.74□□□□□ -1.65
VCL-202ENST00000372755 MEGF8Q7Z7M0 2845 aa4.74□□□□□ -1.65
VCL-202ENST00000372755 DMDP11532 3685 aa4.71□□□□□ -1.65
VCL-202ENST00000372755 MUC3AQ02505 3323 aa4.71□□□□□ -1.66
VCL-202ENST00000372755 ANK3Q12955 4377 aaKnown RBP4.7□□□□□ -1.66
VCL-202ENST00000372755 FBN1P35555 2871 aaKnown RBP4.68□□□□□ -1.66
VCL-202ENST00000372755 ALMS1Q8TCU4 4167 aa4.67□□□□□ -1.66
VCL-202ENST00000372755 ZFHX4Q86UP3 3567 aa4.67□□□□□ -1.66
VCL-202ENST00000372755 SRRM2Q9UQ35 2752 aaKnown RBP4.66□□□□□ -1.66
VCL-202ENST00000372755 HUWE1Q7Z6Z7 4374 aaKnown RBP4.66□□□□□ -1.66
VCL-202ENST00000372755 LAMA5O15230 3695 aa4.59□□□□□ -1.67
VCL-202ENST00000372755 RELNP78509 3460 aa4.58□□□□□ -1.68
VCL-202ENST00000372755 NBPF19A0A087WUL8 3843 aa4.58□□□□□ -1.68
VCL-202ENST00000372755 CSMD1Q96PZ7 3565 aa4.56□□□□□ -1.68
VCL-202ENST00000372755 COL7A1Q02388 2944 aa4.56□□□□□ -1.68
VCL-202ENST00000372755 MT1HP80294 61 aa4.54□□□□□ -1.68
VCL-202ENST00000372755 CUBNO60494 3623 aa4.52□□□□□ -1.69
VCL-202ENST00000372755 KRTAP10-7P60409 375 aaPredicted RBP4.49□□□□□ -1.69
VCL-202ENST00000372755 SPRR2GQ9BYE4 73 aa4.49□□□□□ -1.69
VCL-202ENST00000372755 MT2AP02795 61 aa4.49□□□□□ -1.69
VCL-202ENST00000372755 KRTAP4-1Q9BYQ7 146 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms