RNA–Protein interactions for RNA: ENST00000372195.5

RAPGEF1-203, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-203ENST00000372195 ATMQ13315 3056 aa13.07□□□□□ -0.32
RAPGEF1-203ENST00000372195 UBR5O95071 2799 aaPredicted RBP13.04□□□□□ -0.32
RAPGEF1-203ENST00000372195 C10orf95Q9H7T3 257 aa13.03□□□□□ -0.32
RAPGEF1-203ENST00000372195 ADGRG4Q8IZF6 3080 aa13.03□□□□□ -0.32
RAPGEF1-203ENST00000372195 ITPR2Q14571 2701 aa13□□□□□ -0.33
RAPGEF1-203ENST00000372195 TACC2O95359 2948 aa13□□□□□ -0.33
RAPGEF1-203ENST00000372195 USP34Q70CQ2 3546 aa13□□□□□ -0.33
RAPGEF1-203ENST00000372195 ASH1LQ9NR48 2969 aaKnown RBP12.99□□□□□ -0.33
RAPGEF1-203ENST00000372195 BAHCC1Q9P281 2608 aa12.94□□□□□ -0.34
RAPGEF1-203ENST00000372195 APCP25054 2843 aa12.94□□□□□ -0.34
RAPGEF1-203ENST00000372195 COL12A1Q99715 3063 aa12.92□□□□□ -0.34
RAPGEF1-203ENST00000372195 CRYBG3Q68DQ2 2970 aa12.89□□□□□ -0.35
RAPGEF1-203ENST00000372195 STAB2Q8WWQ8 2551 aa12.89□□□□□ -0.35
RAPGEF1-203ENST00000372195 ITPR1Q14643 2758 aa12.89□□□□□ -0.35
RAPGEF1-203ENST00000372195 TNP1P09430 55 aa12.87□□□□□ -0.35
RAPGEF1-203ENST00000372195 NSD1Q96L73 2696 aaPredicted RBP12.86□□□□□ -0.35
RAPGEF1-203ENST00000372195 A0A1B0GVY2 172 aa12.85□□□□□ -0.35
RAPGEF1-203ENST00000372195 UTP20O75691 2785 aaKnown RBP12.85□□□□□ -0.35
RAPGEF1-203ENST00000372195 HIVEP1P15822 2718 aa12.84□□□□□ -0.35
RAPGEF1-203ENST00000372195 MYO15AQ9UKN7 3530 aa12.83□□□□□ -0.36
RAPGEF1-203ENST00000372195 ZZEF1O43149 2961 aa12.77□□□□□ -0.37
RAPGEF1-203ENST00000372195 EYSQ5T1H1 3165 aa12.75□□□□□ -0.37
RAPGEF1-203ENST00000372195 H0YAA0 97 aa12.73□□□□□ -0.37
RAPGEF1-203ENST00000372195 KRTAP1-4P0C5Y4 121 aa12.72□□□□□ -0.37
RAPGEF1-203ENST00000372195 XP32Q5T750 250 aa12.71□□□□□ -0.38
RAPGEF1-203ENST00000372195 KRTAP10-8P60410 259 aa12.64□□□□□ -0.39
RAPGEF1-203ENST00000372195 KMT2BQ9UMN6 2715 aaPredicted RBP12.58□□□□□ -0.4
RAPGEF1-203ENST00000372195 WDFY3Q8IZQ1 3526 aa12.5□□□□□ -0.41
RAPGEF1-203ENST00000372195 CELSR2Q9HCU4 2923 aa12.48□□□□□ -0.41
RAPGEF1-203ENST00000372195 FLNCQ14315 2725 aa12.47□□□□□ -0.41
RAPGEF1-203ENST00000372195 LOC400499M0QZD8 3231 aa12.44□□□□□ -0.42
RAPGEF1-203ENST00000372195 ASPMQ8IZT6 3477 aa12.44□□□□□ -0.42
RAPGEF1-203ENST00000372195 P0C880 135 aa12.4□□□□□ -0.42
RAPGEF1-203ENST00000372195 TNRC18O15417 2968 aaPredicted RBP12.4□□□□□ -0.42
RAPGEF1-203ENST00000372195 DMXL1Q9Y485 3027 aa12.38□□□□□ -0.43
RAPGEF1-203ENST00000372195 PP632Q6XCG6 107 aa12.36□□□□□ -0.43
RAPGEF1-203ENST00000372195 DCHS1Q96JQ0 3298 aa12.35□□□□□ -0.43
RAPGEF1-203ENST00000372195 DCHS2Q6V1P9 2916 aa12.31□□□□□ -0.44
RAPGEF1-203ENST00000372195 HRNRQ86YZ3 2850 aaPredicted RBP12.28□□□□□ -0.44
RAPGEF1-203ENST00000372195 KRTAP10-10P60014 251 aa12.27□□□□□ -0.45
RAPGEF1-203ENST00000372195 ZFHX4Q86UP3 3567 aa12.26□□□□□ -0.45
RAPGEF1-203ENST00000372195 TPRXLQ17RH7 258 aa12.21□□□□□ -0.46
RAPGEF1-203ENST00000372195 KRTAP21-3Q3LHN1 58 aa12.19□□□□□ -0.46
RAPGEF1-203ENST00000372195 KRTAP13-3Q3SY46 172 aa12.17□□□□□ -0.46
RAPGEF1-203ENST00000372195 ZANQ9Y493 2812 aa12.17□□□□□ -0.46
RAPGEF1-203ENST00000372195 RELNP78509 3460 aa12.16□□□□□ -0.46
RAPGEF1-203ENST00000372195 CSMD1Q96PZ7 3565 aa12.15□□□□□ -0.46
RAPGEF1-203ENST00000372195 FBN2P35556 2912 aa12.13□□□□□ -0.47
RAPGEF1-203ENST00000372195 TENM4Q6N022 2769 aa12.11□□□□□ -0.47
RAPGEF1-203ENST00000372195 NIPBLQ6KC79 2804 aaeCLIP12.06□□□□□ -0.48
RAPGEF1-203ENST00000372195 KRTAP12-2P59991 146 aa12.02□□□□□ -0.49
RAPGEF1-203ENST00000372195 CELSR1Q9NYQ6 3014 aa11.99□□□□□ -0.49
RAPGEF1-203ENST00000372195 LAMA5O15230 3695 aa11.95□□□□□ -0.5
RAPGEF1-203ENST00000372195 NBPF19A0A087WUL8 3843 aa11.9□□□□□ -0.5
RAPGEF1-203ENST00000372195 NF1P21359 2839 aa11.9□□□□□ -0.5
RAPGEF1-203ENST00000372195 PRO2289Q9P1D8 64 aa11.87□□□□□ -0.51
RAPGEF1-203ENST00000372195 TGP01266 2768 aa11.83□□□□□ -0.52
RAPGEF1-203ENST00000372195 TENM2Q9NT68 2774 aa11.81□□□□□ -0.52
RAPGEF1-203ENST00000372195 SMG1Q96Q15 3661 aaKnown RBP11.79□□□□□ -0.52
RAPGEF1-203ENST00000372195 TENM1Q9UKZ4 2725 aa11.77□□□□□ -0.53
RAPGEF1-203ENST00000372195 DMDP11532 3685 aa11.69□□□□□ -0.54
RAPGEF1-203ENST00000372195 KRTAP12-1P59990 96 aa11.63□□□□□ -0.55
RAPGEF1-203ENST00000372195 KRTAP3-1Q9BYR8 98 aa11.61□□□□□ -0.55
RAPGEF1-203ENST00000372195 MXRA5Q9NR99 2828 aa11.59□□□□□ -0.55
RAPGEF1-203ENST00000372195 SVEP1Q4LDE5 3571 aa11.59□□□□□ -0.55
RAPGEF1-203ENST00000372195 KRTAP13-4Q3LI77 160 aa11.55□□□□□ -0.56
RAPGEF1-203ENST00000372195 TENM3Q9P273 2699 aa11.48□□□□□ -0.57
RAPGEF1-203ENST00000372195 SPENQ96T58 3664 aaKnown RBP11.37□□□□□ -0.59
RAPGEF1-203ENST00000372195 ANK3Q12955 4377 aaKnown RBP11.36□□□□□ -0.59
RAPGEF1-203ENST00000372195 PKD1L1Q8TDX9 2849 aa11.36□□□□□ -0.59
RAPGEF1-203ENST00000372195 VWFP04275 2813 aa11.33□□□□□ -0.6
RAPGEF1-203ENST00000372195 CUBNO60494 3623 aa11.31□□□□□ -0.6
RAPGEF1-203ENST00000372195 KRTAP15-1Q3LI76 137 aa11.24□□□□□ -0.61
RAPGEF1-203ENST00000372195 KRTAP10-6P60371 365 aaPredicted RBP11.22□□□□□ -0.61
RAPGEF1-203ENST00000372195 PDZD2O15018 2839 aa11.19□□□□□ -0.62
RAPGEF1-203ENST00000372195 ZFHX3Q15911 3703 aa11.17□□□□□ -0.62
RAPGEF1-203ENST00000372195 CSMD2Q7Z408 3487 aa11.16□□□□□ -0.62
RAPGEF1-203ENST00000372195 TRRAPQ9Y4A5 3859 aa10.96□□□□□ -0.66
RAPGEF1-203ENST00000372195 FBN1P35555 2871 aaKnown RBP10.93□□□□□ -0.66
RAPGEF1-203ENST00000372195 MUC3AQ02505 3323 aa10.93□□□□□ -0.66
RAPGEF1-203ENST00000372195 BSNQ9UPA5 3926 aa10.9□□□□□ -0.66
RAPGEF1-203ENST00000372195 HUWE1Q7Z6Z7 4374 aaKnown RBP10.88□□□□□ -0.67
RAPGEF1-203ENST00000372195 CRCT1Q9UGL9 99 aa10.85□□□□□ -0.67
RAPGEF1-203ENST00000372195 KRTAP3-3Q9BYR6 98 aa10.83□□□□□ -0.68
RAPGEF1-203ENST00000372195 VPS13CQ709C8 3753 aa10.82□□□□□ -0.68
RAPGEF1-203ENST00000372195 FBN3Q75N90 2809 aa10.82□□□□□ -0.68
RAPGEF1-203ENST00000372195 KRTAP3-2Q9BYR7 98 aa10.8□□□□□ -0.68
RAPGEF1-203ENST00000372195 OTOGQ6ZRI0 2925 aa10.77□□□□□ -0.69
RAPGEF1-203ENST00000372195 MT1HL1P0DM35 61 aa10.77□□□□□ -0.69
RAPGEF1-203ENST00000372195 MEGF8Q7Z7M0 2845 aa10.76□□□□□ -0.69
RAPGEF1-203ENST00000372195 KRTAP4-5Q9BYR2 181 aa10.64□□□□□ -0.71
RAPGEF1-203ENST00000372195 KRTAP10-12P60413 245 aa10.62□□□□□ -0.71
RAPGEF1-203ENST00000372195 CSMD3Q7Z407 3707 aa10.56□□□□□ -0.72
RAPGEF1-203ENST00000372195 INE1O15225 51 aa10.53□□□□□ -0.72
RAPGEF1-203ENST00000372195 SRRM2Q9UQ35 2752 aaKnown RBP10.47□□□□□ -0.73
RAPGEF1-203ENST00000372195 COL7A1Q02388 2944 aa10.47□□□□□ -0.73
RAPGEF1-203ENST00000372195 KRTAP10-4P60372 401 aaPredicted RBP10.43□□□□□ -0.74
RAPGEF1-203ENST00000372195 LORP23490 312 aaPredicted RBP10.41□□□□□ -0.74
RAPGEF1-203ENST00000372195 LCE3AQ5TA76 89 aa10.4□□□□□ -0.74
RAPGEF1-203ENST00000372195 ALMS1Q8TCU4 4167 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms