RNA–Protein interactions for RNA: ENST00000370651.5

PTP4A1-201, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A1, Length 5,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-201ENST00000370651 HIVEP1P15822 2718 aa9.74□□□□□ -0.85
PTP4A1-201ENST00000370651 NIPBLQ6KC79 2804 aaeCLIP9.7□□□□□ -0.86
PTP4A1-201ENST00000370651 Q5VSD8 79 aa9.7□□□□□ -0.86
PTP4A1-201ENST00000370651 SEC61BP60468 96 aaKnown RBP9.7□□□□□ -0.86
PTP4A1-201ENST00000370651 M0R2T5 61 aa9.7□□□□□ -0.86
PTP4A1-201ENST00000370651 ZZEF1O43149 2961 aa9.67□□□□□ -0.86
PTP4A1-201ENST00000370651 CELSR2Q9HCU4 2923 aa9.67□□□□□ -0.86
PTP4A1-201ENST00000370651 KRTAP13-2Q52LG2 175 aa9.66□□□□□ -0.86
PTP4A1-201ENST00000370651 RPS29P62273 56 aaKnown RBP9.65□□□□□ -0.86
PTP4A1-201ENST00000370651 CFAP47Q6ZTR5 3102 aa9.61□□□□□ -0.87
PTP4A1-201ENST00000370651 REV3LO60673 3130 aa9.61□□□□□ -0.87
PTP4A1-201ENST00000370651 ZANQ9Y493 2812 aa9.59□□□□□ -0.87
PTP4A1-201ENST00000370651 EYSQ5T1H1 3165 aa9.59□□□□□ -0.87
PTP4A1-201ENST00000370651 KMT2BQ9UMN6 2715 aaPredicted RBP9.56□□□□□ -0.88
PTP4A1-201ENST00000370651 TNRC18O15417 2968 aaPredicted RBP9.56□□□□□ -0.88
PTP4A1-201ENST00000370651 KRTAP16-1A8MUX0 517 aa9.55□□□□□ -0.88
PTP4A1-201ENST00000370651 SPEGQ15772 3267 aa9.54□□□□□ -0.88
PTP4A1-201ENST00000370651 DCHS2Q6V1P9 2916 aa9.51□□□□□ -0.89
PTP4A1-201ENST00000370651 NDUFAF8A1L188 74 aa9.46□□□□□ -0.9
PTP4A1-201ENST00000370651 DMXL1Q9Y485 3027 aa9.45□□□□□ -0.9
PTP4A1-201ENST00000370651 A8MUU9 505 aa9.43□□□□□ -0.9
PTP4A1-201ENST00000370651 HRNRQ86YZ3 2850 aaPredicted RBP9.41□□□□□ -0.9
PTP4A1-201ENST00000370651 SPTBN5Q9NRC6 3674 aaKnown RBP9.41□□□□□ -0.9
PTP4A1-201ENST00000370651 FBN2P35556 2912 aa9.37□□□□□ -0.91
PTP4A1-201ENST00000370651 NF1P21359 2839 aa9.35□□□□□ -0.91
PTP4A1-201ENST00000370651 PLAC4Q8WY50 150 aa9.34□□□□□ -0.91
PTP4A1-201ENST00000370651 C20orf166-AS1Q96NR2 134 aa9.34□□□□□ -0.91
PTP4A1-201ENST00000370651 TENM4Q6N022 2769 aa9.33□□□□□ -0.92
PTP4A1-201ENST00000370651 LOC400499M0QZD8 3231 aa9.29□□□□□ -0.92
PTP4A1-201ENST00000370651 CRYBG3Q68DQ2 2970 aa9.29□□□□□ -0.92
PTP4A1-201ENST00000370651 H0YAA0 97 aa9.23□□□□□ -0.93
PTP4A1-201ENST00000370651 USP34Q70CQ2 3546 aa9.22□□□□□ -0.93
PTP4A1-201ENST00000370651 KRTAP1-4P0C5Y4 121 aa9.2□□□□□ -0.94
PTP4A1-201ENST00000370651 C10orf95Q9H7T3 257 aa9.15□□□□□ -0.95
PTP4A1-201ENST00000370651 MYO15AQ9UKN7 3530 aa9.15□□□□□ -0.95
PTP4A1-201ENST00000370651 TENM3Q9P273 2699 aa9.11□□□□□ -0.95
PTP4A1-201ENST00000370651 MXRA5Q9NR99 2828 aa9.09□□□□□ -0.95
PTP4A1-201ENST00000370651 TNP1P09430 55 aa9.08□□□□□ -0.96
PTP4A1-201ENST00000370651 TGP01266 2768 aa9.05□□□□□ -0.96
PTP4A1-201ENST00000370651 CELSR1Q9NYQ6 3014 aa9□□□□□ -0.97
PTP4A1-201ENST00000370651 TENM1Q9UKZ4 2725 aa9□□□□□ -0.97
PTP4A1-201ENST00000370651 XP32Q5T750 250 aa8.99□□□□□ -0.97
PTP4A1-201ENST00000370651 KRTAP13-3Q3SY46 172 aa8.99□□□□□ -0.97
PTP4A1-201ENST00000370651 PP632Q6XCG6 107 aa8.98□□□□□ -0.97
PTP4A1-201ENST00000370651 P0C880 135 aa8.97□□□□□ -0.97
PTP4A1-201ENST00000370651 MUC3AQ02505 3323 aa8.92□□□□□ -0.98
PTP4A1-201ENST00000370651 DCHS1Q96JQ0 3298 aa8.9□□□□□ -0.99
PTP4A1-201ENST00000370651 RELNP78509 3460 aa8.86□□□□□ -0.99
PTP4A1-201ENST00000370651 PDZD2O15018 2839 aa8.82□□□□□ -1
PTP4A1-201ENST00000370651 KRTAP10-8P60410 259 aa8.79□□□□□ -1
PTP4A1-201ENST00000370651 WDFY3Q8IZQ1 3526 aa8.78□□□□□ -1
PTP4A1-201ENST00000370651 LAMA5O15230 3695 aa8.76□□□□□ -1.01
PTP4A1-201ENST00000370651 TENM2Q9NT68 2774 aa8.74□□□□□ -1.01
PTP4A1-201ENST00000370651 TPRXLQ17RH7 258 aa8.71□□□□□ -1.02
PTP4A1-201ENST00000370651 PKD1L1Q8TDX9 2849 aa8.69□□□□□ -1.02
PTP4A1-201ENST00000370651 ASPMQ8IZT6 3477 aa8.69□□□□□ -1.02
PTP4A1-201ENST00000370651 KRTAP21-3Q3LHN1 58 aa8.68□□□□□ -1.02
PTP4A1-201ENST00000370651 A0A1B0GVY2 172 aa8.63□□□□□ -1.03
PTP4A1-201ENST00000370651 ZFHX4Q86UP3 3567 aa8.61□□□□□ -1.03
PTP4A1-201ENST00000370651 DMDP11532 3685 aa8.6□□□□□ -1.03
PTP4A1-201ENST00000370651 VWFP04275 2813 aa8.6□□□□□ -1.03
PTP4A1-201ENST00000370651 KRTAP12-2P59991 146 aa8.58□□□□□ -1.04
PTP4A1-201ENST00000370651 CSMD1Q96PZ7 3565 aa8.54□□□□□ -1.04
PTP4A1-201ENST00000370651 FBN1P35555 2871 aaKnown RBP8.5□□□□□ -1.05
PTP4A1-201ENST00000370651 KRTAP3-1Q9BYR8 98 aa8.49□□□□□ -1.05
PTP4A1-201ENST00000370651 KRTAP12-1P59990 96 aa8.45□□□□□ -1.06
PTP4A1-201ENST00000370651 OTOGQ6ZRI0 2925 aa8.4□□□□□ -1.06
PTP4A1-201ENST00000370651 KRTAP10-10P60014 251 aa8.38□□□□□ -1.07
PTP4A1-201ENST00000370651 SMG1Q96Q15 3661 aaKnown RBP8.37□□□□□ -1.07
PTP4A1-201ENST00000370651 FBN3Q75N90 2809 aa8.35□□□□□ -1.07
PTP4A1-201ENST00000370651 KRTAP13-4Q3LI77 160 aa8.35□□□□□ -1.07
PTP4A1-201ENST00000370651 ZFHX3Q15911 3703 aa8.29□□□□□ -1.08
PTP4A1-201ENST00000370651 KRTAP10-6P60371 365 aaPredicted RBP8.29□□□□□ -1.08
PTP4A1-201ENST00000370651 SRRM2Q9UQ35 2752 aaKnown RBP8.27□□□□□ -1.09
PTP4A1-201ENST00000370651 PRO2289Q9P1D8 64 aa8.25□□□□□ -1.09
PTP4A1-201ENST00000370651 MEGF8Q7Z7M0 2845 aa8.24□□□□□ -1.09
PTP4A1-201ENST00000370651 NBPF19A0A087WUL8 3843 aa8.22□□□□□ -1.09
PTP4A1-201ENST00000370651 SVEP1Q4LDE5 3571 aa8.2□□□□□ -1.1
PTP4A1-201ENST00000370651 CUBNO60494 3623 aa8.16□□□□□ -1.1
PTP4A1-201ENST00000370651 CSMD2Q7Z408 3487 aa8.09□□□□□ -1.11
PTP4A1-201ENST00000370651 COL7A1Q02388 2944 aa8.08□□□□□ -1.12
PTP4A1-201ENST00000370651 KRTAP15-1Q3LI76 137 aa8.01□□□□□ -1.13
PTP4A1-201ENST00000370651 KRTAP3-2Q9BYR7 98 aa8□□□□□ -1.13
PTP4A1-201ENST00000370651 SPENQ96T58 3664 aaKnown RBP7.98□□□□□ -1.13
PTP4A1-201ENST00000370651 ANK3Q12955 4377 aaKnown RBP7.98□□□□□ -1.13
PTP4A1-201ENST00000370651 KRTAP3-3Q9BYR6 98 aa7.96□□□□□ -1.14
PTP4A1-201ENST00000370651 TRRAPQ9Y4A5 3859 aa7.91□□□□□ -1.14
PTP4A1-201ENST00000370651 MT1HL1P0DM35 61 aa7.75□□□□□ -1.17
PTP4A1-201ENST00000370651 BSNQ9UPA5 3926 aa7.73□□□□□ -1.17
PTP4A1-201ENST00000370651 KRTAP10-4P60372 401 aaPredicted RBP7.66□□□□□ -1.18
PTP4A1-201ENST00000370651 INE1O15225 51 aa7.66□□□□□ -1.18
PTP4A1-201ENST00000370651 HUWE1Q7Z6Z7 4374 aaKnown RBP7.56□□□□□ -1.2
PTP4A1-201ENST00000370651 VPS13CQ709C8 3753 aa7.54□□□□□ -1.2
PTP4A1-201ENST00000370651 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
PTP4A1-201ENST00000370651 KRTAP23-1A1A580 65 aa7.46□□□□□ -1.21
PTP4A1-201ENST00000370651 LORP23490 312 aaPredicted RBP7.4□□□□□ -1.22
PTP4A1-201ENST00000370651 CSMD3Q7Z407 3707 aa7.37□□□□□ -1.23
PTP4A1-201ENST00000370651 KRTAP12-3P60328 96 aa7.37□□□□□ -1.23
PTP4A1-201ENST00000370651 LCE3AQ5TA76 89 aa7.32□□□□□ -1.24
PTP4A1-201ENST00000370651 KRTAP4-5Q9BYR2 181 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms