RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 FRYLO94915 3013 aa4.86□□□□□ -1.63
VPS13A-203ENST00000360280 TENM3Q9P273 2699 aa4.86□□□□□ -1.63
VPS13A-203ENST00000360280 TPRXLQ17RH7 258 aa4.85□□□□□ -1.63
VPS13A-203ENST00000360280 FREM2Q5SZK8 3169 aa4.85□□□□□ -1.63
VPS13A-203ENST00000360280 CELSR3Q9NYQ7 3312 aa4.85□□□□□ -1.63
VPS13A-203ENST00000360280 LAMA3Q16787 3333 aa4.83□□□□□ -1.64
VPS13A-203ENST00000360280 ASH1LQ9NR48 2969 aaKnown RBP4.83□□□□□ -1.64
VPS13A-203ENST00000360280 REV3LO60673 3130 aa4.83□□□□□ -1.64
VPS13A-203ENST00000360280 CDH23Q9H251 3354 aa4.83□□□□□ -1.64
VPS13A-203ENST00000360280 TENM1Q9UKZ4 2725 aa4.82□□□□□ -1.64
VPS13A-203ENST00000360280 A0A1B0GVY2 172 aa4.81□□□□□ -1.64
VPS13A-203ENST00000360280 BRCA2P51587 3418 aa4.81□□□□□ -1.64
VPS13A-203ENST00000360280 KRTAP10-10P60014 251 aa4.8□□□□□ -1.64
VPS13A-203ENST00000360280 PRUNE2Q8WUY3 3088 aa4.79□□□□□ -1.64
VPS13A-203ENST00000360280 NIPBLQ6KC79 2804 aaeCLIP4.77□□□□□ -1.65
VPS13A-203ENST00000360280 KRTAP1-4P0C5Y4 121 aa4.75□□□□□ -1.65
VPS13A-203ENST00000360280 FLNCQ14315 2725 aa4.74□□□□□ -1.65
VPS13A-203ENST00000360280 CHD9Q3L8U1 2897 aa4.74□□□□□ -1.65
VPS13A-203ENST00000360280 CRYBG3Q68DQ2 2970 aa4.74□□□□□ -1.65
VPS13A-203ENST00000360280 COL12A1Q99715 3063 aa4.73□□□□□ -1.65
VPS13A-203ENST00000360280 KRTAP13-4Q3LI77 160 aa4.73□□□□□ -1.65
VPS13A-203ENST00000360280 VCANP13611 3396 aa4.73□□□□□ -1.65
VPS13A-203ENST00000360280 NF1P21359 2839 aa4.73□□□□□ -1.65
VPS13A-203ENST00000360280 KRTAP12-2P59991 146 aa4.7□□□□□ -1.66
VPS13A-203ENST00000360280 CELSR2Q9HCU4 2923 aa4.68□□□□□ -1.66
VPS13A-203ENST00000360280 TACC2O95359 2948 aa4.67□□□□□ -1.66
VPS13A-203ENST00000360280 KRTAP13-3Q3SY46 172 aa4.67□□□□□ -1.66
VPS13A-203ENST00000360280 COL6A3P12111 3177 aa4.67□□□□□ -1.66
VPS13A-203ENST00000360280 INE1O15225 51 aa4.65□□□□□ -1.66
VPS13A-203ENST00000360280 DMXL2Q8TDJ6 3036 aa4.64□□□□□ -1.67
VPS13A-203ENST00000360280 KRTAP21-3Q3LHN1 58 aa4.63□□□□□ -1.67
VPS13A-203ENST00000360280 LAMA1P25391 3075 aa4.62□□□□□ -1.67
VPS13A-203ENST00000360280 TNRC18O15417 2968 aaPredicted RBP4.61□□□□□ -1.67
VPS13A-203ENST00000360280 SZT2Q5T011 3432 aa4.59□□□□□ -1.68
VPS13A-203ENST00000360280 ZZEF1O43149 2961 aa4.58□□□□□ -1.68
VPS13A-203ENST00000360280 NBEAQ8NFP9 2946 aa4.58□□□□□ -1.68
VPS13A-203ENST00000360280 PDZD2O15018 2839 aa4.58□□□□□ -1.68
VPS13A-203ENST00000360280 BOD1L1Q8NFC6 3051 aa4.57□□□□□ -1.68
VPS13A-203ENST00000360280 HTTP42858 3142 aa4.57□□□□□ -1.68
VPS13A-203ENST00000360280 KRTAP12-1P59990 96 aa4.57□□□□□ -1.68
VPS13A-203ENST00000360280 SRRM2Q9UQ35 2752 aaKnown RBP4.57□□□□□ -1.68
VPS13A-203ENST00000360280 KRTAP15-1Q3LI76 137 aa4.55□□□□□ -1.68
VPS13A-203ENST00000360280 DCHS2Q6V1P9 2916 aa4.54□□□□□ -1.68
VPS13A-203ENST00000360280 SPEGQ15772 3267 aa4.51□□□□□ -1.69
VPS13A-203ENST00000360280 ATMQ13315 3056 aa4.51□□□□□ -1.69
VPS13A-203ENST00000360280 ASPMQ8IZT6 3477 aa4.5□□□□□ -1.69
VPS13A-203ENST00000360280 CELSR1Q9NYQ6 3014 aa4.5□□□□□ -1.69
VPS13A-203ENST00000360280 HRNRQ86YZ3 2850 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-203ENST00000360280 ADGRG4Q8IZF6 3080 aa4.5□□□□□ -1.69
VPS13A-203ENST00000360280 WDFY3Q8IZQ1 3526 aa4.49□□□□□ -1.69
VPS13A-203ENST00000360280 CFAP47Q6ZTR5 3102 aa4.49□□□□□ -1.69
VPS13A-203ENST00000360280 TENM4Q6N022 2769 aa4.47□□□□□ -1.69
VPS13A-203ENST00000360280 ZANQ9Y493 2812 aa4.47□□□□□ -1.69
VPS13A-203ENST00000360280 MXRA5Q9NR99 2828 aa4.45□□□□□ -1.7
VPS13A-203ENST00000360280 SPTBN5Q9NRC6 3674 aaKnown RBP4.44□□□□□ -1.7
VPS13A-203ENST00000360280 MYO15AQ9UKN7 3530 aa4.43□□□□□ -1.7
VPS13A-203ENST00000360280 VWFP04275 2813 aa4.43□□□□□ -1.7
VPS13A-203ENST00000360280 FBN2P35556 2912 aa4.43□□□□□ -1.7
VPS13A-203ENST00000360280 ZFHX4Q86UP3 3567 aa4.42□□□□□ -1.7
VPS13A-203ENST00000360280 DMXL1Q9Y485 3027 aa4.41□□□□□ -1.7
VPS13A-203ENST00000360280 TENM2Q9NT68 2774 aa4.37□□□□□ -1.71
VPS13A-203ENST00000360280 NBPF19A0A087WUL8 3843 aa4.34□□□□□ -1.71
VPS13A-203ENST00000360280 RELNP78509 3460 aa4.32□□□□□ -1.72
VPS13A-203ENST00000360280 PKD1L1Q8TDX9 2849 aa4.31□□□□□ -1.72
VPS13A-203ENST00000360280 EYSQ5T1H1 3165 aa4.3□□□□□ -1.72
VPS13A-203ENST00000360280 KRTAP3-1Q9BYR8 98 aa4.29□□□□□ -1.72
VPS13A-203ENST00000360280 KRTAP10-12P60413 245 aa4.29□□□□□ -1.72
VPS13A-203ENST00000360280 KRTAP10-6P60371 365 aaPredicted RBP4.27□□□□□ -1.73
VPS13A-203ENST00000360280 ZFHX3Q15911 3703 aa4.26□□□□□ -1.73
VPS13A-203ENST00000360280 LOC400499M0QZD8 3231 aa4.25□□□□□ -1.73
VPS13A-203ENST00000360280 SPENQ96T58 3664 aaKnown RBP4.24□□□□□ -1.73
VPS13A-203ENST00000360280 COL7A1Q02388 2944 aa4.24□□□□□ -1.73
VPS13A-203ENST00000360280 LAMA5O15230 3695 aa4.24□□□□□ -1.73
VPS13A-203ENST00000360280 MEGF8Q7Z7M0 2845 aa4.22□□□□□ -1.73
VPS13A-203ENST00000360280 DCHS1Q96JQ0 3298 aa4.21□□□□□ -1.73
VPS13A-203ENST00000360280 SMG1Q96Q15 3661 aaKnown RBP4.21□□□□□ -1.73
VPS13A-203ENST00000360280 CRCT1Q9UGL9 99 aa4.19□□□□□ -1.74
VPS13A-203ENST00000360280 CSMD1Q96PZ7 3565 aa4.19□□□□□ -1.74
VPS13A-203ENST00000360280 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
VPS13A-203ENST00000360280 KRTAP12-3P60328 96 aa4.14□□□□□ -1.75
VPS13A-203ENST00000360280 DMDP11532 3685 aa4.12□□□□□ -1.75
VPS13A-203ENST00000360280 FBN3Q75N90 2809 aa4.09□□□□□ -1.76
VPS13A-203ENST00000360280 KRTAP3-2Q9BYR7 98 aa4.04□□□□□ -1.76
VPS13A-203ENST00000360280 KRTAP3-3Q9BYR6 98 aa4.03□□□□□ -1.76
VPS13A-203ENST00000360280 SVEP1Q4LDE5 3571 aa4.02□□□□□ -1.77
VPS13A-203ENST00000360280 LCE3AQ5TA76 89 aa4□□□□□ -1.77
VPS13A-203ENST00000360280 KRTAP10-5P60370 271 aa3.99□□□□□ -1.77
VPS13A-203ENST00000360280 CUBNO60494 3623 aa3.97□□□□□ -1.77
VPS13A-203ENST00000360280 FBN1P35555 2871 aaKnown RBP3.94□□□□□ -1.78
VPS13A-203ENST00000360280 MUC3AQ02505 3323 aa3.9□□□□□ -1.79
VPS13A-203ENST00000360280 VPS13CQ709C8 3753 aa3.89□□□□□ -1.79
VPS13A-203ENST00000360280 OTOGQ6ZRI0 2925 aa3.86□□□□□ -1.79
VPS13A-203ENST00000360280 KRTAP8-1Q8IUC2 63 aa3.85□□□□□ -1.79
VPS13A-203ENST00000360280 MT1HL1P0DM35 61 aa3.83□□□□□ -1.8
VPS13A-203ENST00000360280 TRRAPQ9Y4A5 3859 aa3.82□□□□□ -1.8
VPS13A-203ENST00000360280 CSMD3Q7Z407 3707 aa3.82□□□□□ -1.8
VPS13A-203ENST00000360280 CSMD2Q7Z408 3487 aa3.77□□□□□ -1.81
VPS13A-203ENST00000360280 KRTAP10-7P60409 375 aaPredicted RBP3.67□□□□□ -1.82
VPS13A-203ENST00000360280 LORP23490 312 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-203ENST00000360280 KRTAP10-4P60372 401 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms