RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 Q6ZSA8 131 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 NOTCH2NLQ7Z3S9 236 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 PRO0628Q9UI54 55 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 DNAH5Q8TE73 4624 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 DNAH11Q96DT5 4516 aa12.98□□□□□ -0.33
UPF3A-201ENST00000351487 ALMS1Q8TCU4 4167 aa12.97□□□□□ -0.33
UPF3A-201ENST00000351487 NDUFS5O43920 106 aa12.97□□□□□ -0.33
UPF3A-201ENST00000351487 IGLV7-46A0A075B6I9 117 aa12.96□□□□□ -0.33
UPF3A-201ENST00000351487 SPINK6Q6UWN8 80 aa12.93□□□□□ -0.34
UPF3A-201ENST00000351487 KRTAP10-1P60331 282 aa12.9□□□□□ -0.34
UPF3A-201ENST00000351487 PCOTHQ58A44 107 aa12.89□□□□□ -0.35
UPF3A-201ENST00000351487 V9GYY9 64 aa12.88□□□□□ -0.35
UPF3A-201ENST00000351487 BRK1Q8WUW1 75 aa12.86□□□□□ -0.35
UPF3A-201ENST00000351487 C8orf87E5RJ46 101 aa12.86□□□□□ -0.35
UPF3A-201ENST00000351487 KRTAP13-2Q52LG2 175 aa12.85□□□□□ -0.35
UPF3A-201ENST00000351487 PKD1P98161 4303 aa12.83□□□□□ -0.36
UPF3A-201ENST00000351487 KRTAP13-3Q3SY46 172 aa12.82□□□□□ -0.36
UPF3A-201ENST00000351487 COA5Q86WW8 74 aa12.82□□□□□ -0.36
UPF3A-201ENST00000351487 C1orf195Q5TG92 126 aa12.81□□□□□ -0.36
UPF3A-201ENST00000351487 FAT2Q9NYQ8 4349 aa12.8□□□□□ -0.36
UPF3A-201ENST00000351487 LOC101927531A0A1B0GV80 90 aa12.8□□□□□ -0.36
UPF3A-201ENST00000351487 PSPHP1O15172 72 aa12.79□□□□□ -0.36
UPF3A-201ENST00000351487 Q5W150 140 aa12.78□□□□□ -0.36
UPF3A-201ENST00000351487 Q8N9P0 234 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-201ENST00000351487 LRP1BQ9NZR2 4599 aa12.76□□□□□ -0.37
UPF3A-201ENST00000351487 KRTAP1-4P0C5Y4 121 aa12.76□□□□□ -0.37
UPF3A-201ENST00000351487 LIMD2Q9BT23 127 aa12.74□□□□□ -0.37
UPF3A-201ENST00000351487 A8MUN3 132 aa12.73□□□□□ -0.37
UPF3A-201ENST00000351487 HYDINQ4G0P3 5121 aa12.72□□□□□ -0.37
UPF3A-201ENST00000351487 LINC00313P59037 77 aa12.72□□□□□ -0.37
UPF3A-201ENST00000351487 Q5VV11 94 aa12.69□□□□□ -0.38
UPF3A-201ENST00000351487 HRES1P13985 223 aa12.65□□□□□ -0.38
UPF3A-201ENST00000351487 FAM229AH3BQW9 127 aa12.64□□□□□ -0.39
UPF3A-201ENST00000351487 KRTAP16-1A8MUX0 517 aa12.61□□□□□ -0.39
UPF3A-201ENST00000351487 PRR15LQ9BU68 103 aa12.6□□□□□ -0.39
UPF3A-201ENST00000351487 VPS13BQ7Z7G8 4022 aa12.6□□□□□ -0.39
UPF3A-201ENST00000351487 PLA2G1BP04054 148 aaKnown RBP12.58□□□□□ -0.4
UPF3A-201ENST00000351487 TYMSOSQ8TAI1 123 aa12.55□□□□□ -0.4
UPF3A-201ENST00000351487 LINC01558Q9Y6Z2 57 aa12.54□□□□□ -0.4
UPF3A-201ENST00000351487 Q75L30 129 aa12.54□□□□□ -0.4
UPF3A-201ENST00000351487 SPINK1P00995 79 aa12.53□□□□□ -0.4
UPF3A-201ENST00000351487 C4orf48Q5BLP8 95 aa12.53□□□□□ -0.4
UPF3A-201ENST00000351487 IGKV2-30P06310 120 aa12.52□□□□□ -0.41
UPF3A-201ENST00000351487 CHKB-CPT1BH3BT56 60 aa12.52□□□□□ -0.41
UPF3A-201ENST00000351487 SPAG11AQ6PDA7 123 aa12.5□□□□□ -0.41
UPF3A-201ENST00000351487 ACYP2P14621 99 aa12.48□□□□□ -0.41
UPF3A-201ENST00000351487 DMAC1Q96GE9 116 aa12.48□□□□□ -0.41
UPF3A-201ENST00000351487 RETNLBQ9BQ08 111 aa12.47□□□□□ -0.41
UPF3A-201ENST00000351487 RPS29P62273 56 aaKnown RBP12.44□□□□□ -0.42
UPF3A-201ENST00000351487 SACSQ9NZJ4 4579 aa12.42□□□□□ -0.42
UPF3A-201ENST00000351487 PKHD1P08F94 4074 aa12.42□□□□□ -0.42
UPF3A-201ENST00000351487 PRR26Q8N8Z3 221 aa12.39□□□□□ -0.43
UPF3A-201ENST00000351487 LINC00304Q8N9R0 145 aa12.39□□□□□ -0.43
UPF3A-201ENST00000351487 A8MU10 97 aa12.38□□□□□ -0.43
UPF3A-201ENST00000351487 A6NED7 52 aa12.36□□□□□ -0.43
UPF3A-201ENST00000351487 A0A1B0GVY2 172 aa12.33□□□□□ -0.44
UPF3A-201ENST00000351487 LCA10Q71F78 164 aa12.32□□□□□ -0.44
UPF3A-201ENST00000351487 IGKV2D-30A0A075B6S6 120 aa12.3□□□□□ -0.44
UPF3A-201ENST00000351487 DYNC1H1Q14204 4646 aaKnown RBP12.29□□□□□ -0.44
UPF3A-201ENST00000351487 SMR3BP02814 79 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-201ENST00000351487 CDC42SE1Q9NRR8 79 aa12.27□□□□□ -0.44
UPF3A-201ENST00000351487 KRTAP10-4P60372 401 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-201ENST00000351487 SPINK7P58062 85 aa12.21□□□□□ -0.45
UPF3A-201ENST00000351487 ATP11AUNQ6ZP68 121 aa12.21□□□□□ -0.45
UPF3A-201ENST00000351487 C7orf65Q6ZTY9 151 aa12.18□□□□□ -0.46
UPF3A-201ENST00000351487 APOBP04114 4563 aaKnown RBP12.18□□□□□ -0.46
UPF3A-201ENST00000351487 PKHD1L1Q86WI1 4243 aa12.17□□□□□ -0.46
UPF3A-201ENST00000351487 PMAIP1Q13794 54 aa12.16□□□□□ -0.46
UPF3A-201ENST00000351487 SPTSSBQ8NFR3 76 aa12.13□□□□□ -0.47
UPF3A-201ENST00000351487 FAT1Q14517 4588 aa12.11□□□□□ -0.47
UPF3A-201ENST00000351487 C20orf166-AS1Q96NR2 134 aa12.1□□□□□ -0.47
UPF3A-201ENST00000351487 A8MUU9 505 aa12.09□□□□□ -0.47
UPF3A-201ENST00000351487 A0A1B0GU69 56 aa12.08□□□□□ -0.48
UPF3A-201ENST00000351487 C9orf92A6NGG3 77 aa12.04□□□□□ -0.48
UPF3A-201ENST00000351487 RYR2Q92736 4967 aa12.02□□□□□ -0.49
UPF3A-201ENST00000351487 A6NN06 94 aa12.01□□□□□ -0.49
UPF3A-201ENST00000351487 Q8N1X5 172 aa11.98□□□□□ -0.49
UPF3A-201ENST00000351487 KTN1-AS1Q86SY8 53 aa11.92□□□□□ -0.5
UPF3A-201ENST00000351487 FLG2Q5D862 2391 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-201ENST00000351487 SPATA8Q6RVD6 105 aa11.88□□□□□ -0.51
UPF3A-201ENST00000351487 UQCR11O14957 56 aa11.86□□□□□ -0.51
UPF3A-201ENST00000351487 KMT2CQ8NEZ4 4911 aaKnown RBP11.83□□□□□ -0.52
UPF3A-201ENST00000351487 MIR22HGQ0VDD5 57 aa11.8□□□□□ -0.52
UPF3A-201ENST00000351487 KRTAP3-1Q9BYR8 98 aa11.8□□□□□ -0.52
UPF3A-201ENST00000351487 KRTAP10-8P60410 259 aa11.78□□□□□ -0.52
UPF3A-201ENST00000351487 SEC61GP60059 68 aa11.73□□□□□ -0.53
UPF3A-201ENST00000351487 Q5VSD8 79 aa11.72□□□□□ -0.53
UPF3A-201ENST00000351487 TNXBP22105 4242 aa11.71□□□□□ -0.53
UPF3A-201ENST00000351487 FAT3Q8TDW7 4589 aa11.7□□□□□ -0.54
UPF3A-201ENST00000351487 HSPG2P98160 4391 aa11.66□□□□□ -0.54
UPF3A-201ENST00000351487 COX6B2Q6YFQ2 88 aa11.66□□□□□ -0.54
UPF3A-201ENST00000351487 LRP1Q07954 4544 aaKnown RBP11.65□□□□□ -0.54
UPF3A-201ENST00000351487 RPL37P61927 97 aaKnown RBP11.57□□□□□ -0.56
UPF3A-201ENST00000351487 RBM12B-AS1Q9P1G2 102 aa11.52□□□□□ -0.56
UPF3A-201ENST00000351487 RYR1P21817 5038 aa11.51□□□□□ -0.57
UPF3A-201ENST00000351487 XP32Q5T750 250 aa11.51□□□□□ -0.57
UPF3A-201ENST00000351487 RYR3Q15413 4870 aa11.5□□□□□ -0.57
UPF3A-201ENST00000351487 KRTAP17-1Q9BYP8 105 aa11.5□□□□□ -0.57
UPF3A-201ENST00000351487 H0YAA0 97 aa11.49□□□□□ -0.57
UPF3A-201ENST00000351487 DMBT1Q9UGM3 2413 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms