RNA–Protein interactions for RNA: ENST00000343090.10

UBE4B-202, Transcript of ubiquitination factor E4B, humanhuman

TSL 1 (best) BASIC

Gene UBE4B, Length 5,267 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-202ENST00000343090 APCP25054 2843 aa4.76□□□□□ -1.65
UBE4B-202ENST00000343090 KRTAP7-1Q8IUC3 87 aa4.76□□□□□ -1.65
UBE4B-202ENST00000343090 DMAC1Q96GE9 116 aa4.76□□□□□ -1.65
UBE4B-202ENST00000343090 A0A087X002 238 aa4.75□□□□□ -1.65
UBE4B-202ENST00000343090 NOTCH2NLQ7Z3S9 236 aa4.75□□□□□ -1.65
UBE4B-202ENST00000343090 S4R3F8 94 aa4.73□□□□□ -1.65
UBE4B-202ENST00000343090 SEC61BP60468 96 aaKnown RBP4.72□□□□□ -1.65
UBE4B-202ENST00000343090 CRYBG3Q68DQ2 2970 aa4.72□□□□□ -1.65
UBE4B-202ENST00000343090 DCHS2Q6V1P9 2916 aa4.7□□□□□ -1.66
UBE4B-202ENST00000343090 FBN2P35556 2912 aa4.7□□□□□ -1.66
UBE4B-202ENST00000343090 RELNP78509 3460 aa4.69□□□□□ -1.66
UBE4B-202ENST00000343090 R4GN34 69 aa4.69□□□□□ -1.66
UBE4B-202ENST00000343090 ZFHX4Q86UP3 3567 aa4.68□□□□□ -1.66
UBE4B-202ENST00000343090 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
UBE4B-202ENST00000343090 ASPMQ8IZT6 3477 aa4.68□□□□□ -1.66
UBE4B-202ENST00000343090 DCHS1Q96JQ0 3298 aa4.68□□□□□ -1.66
UBE4B-202ENST00000343090 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
UBE4B-202ENST00000343090 NIPBLQ6KC79 2804 aaeCLIP4.67□□□□□ -1.66
UBE4B-202ENST00000343090 Q6ZRN7 208 aaPredicted RBP4.66□□□□□ -1.66
UBE4B-202ENST00000343090 NF1P21359 2839 aa4.66□□□□□ -1.66
UBE4B-202ENST00000343090 DMBT1Q9UGM3 2413 aaPredicted RBP4.66□□□□□ -1.66
UBE4B-202ENST00000343090 Q5VSD8 79 aa4.65□□□□□ -1.67
UBE4B-202ENST00000343090 KMT2BQ9UMN6 2715 aaPredicted RBP4.64□□□□□ -1.67
UBE4B-202ENST00000343090 LAMA5O15230 3695 aa4.64□□□□□ -1.67
UBE4B-202ENST00000343090 ROMO1P60602 79 aa4.63□□□□□ -1.67
UBE4B-202ENST00000343090 H1FX-AS1Q4G0G2 97 aa4.62□□□□□ -1.67
UBE4B-202ENST00000343090 PLAC4Q8WY50 150 aa4.62□□□□□ -1.67
UBE4B-202ENST00000343090 FLG2Q5D862 2391 aaPredicted RBP4.61□□□□□ -1.67
UBE4B-202ENST00000343090 KRTAP13-1Q8IUC0 172 aa4.6□□□□□ -1.67
UBE4B-202ENST00000343090 DMDP11532 3685 aa4.6□□□□□ -1.67
UBE4B-202ENST00000343090 KRTAP13-2Q52LG2 175 aa4.59□□□□□ -1.68
UBE4B-202ENST00000343090 KRTAP16-1A8MUX0 517 aa4.58□□□□□ -1.68
UBE4B-202ENST00000343090 M0QZ58 72 aa4.57□□□□□ -1.68
UBE4B-202ENST00000343090 CSMD1Q96PZ7 3565 aa4.56□□□□□ -1.68
UBE4B-202ENST00000343090 RPL37P61927 97 aaKnown RBP4.56□□□□□ -1.68
UBE4B-202ENST00000343090 TENM4Q6N022 2769 aa4.56□□□□□ -1.68
UBE4B-202ENST00000343090 NDUFAF8A1L188 74 aa4.55□□□□□ -1.68
UBE4B-202ENST00000343090 MXRA5Q9NR99 2828 aa4.55□□□□□ -1.68
UBE4B-202ENST00000343090 A8MUU9 505 aa4.55□□□□□ -1.68
UBE4B-202ENST00000343090 SMG1Q96Q15 3661 aaKnown RBP4.54□□□□□ -1.68
UBE4B-202ENST00000343090 MUC3AQ02505 3323 aa4.52□□□□□ -1.69
UBE4B-202ENST00000343090 CELSR1Q9NYQ6 3014 aa4.48□□□□□ -1.69
UBE4B-202ENST00000343090 SVEP1Q4LDE5 3571 aa4.44□□□□□ -1.7
UBE4B-202ENST00000343090 RPS29P62273 56 aaKnown RBP4.44□□□□□ -1.7
UBE4B-202ENST00000343090 TENM3Q9P273 2699 aa4.44□□□□□ -1.7
UBE4B-202ENST00000343090 H0YAA0 97 aa4.42□□□□□ -1.7
UBE4B-202ENST00000343090 C20orf166-AS1Q96NR2 134 aa4.4□□□□□ -1.71
UBE4B-202ENST00000343090 CUBNO60494 3623 aa4.37□□□□□ -1.71
UBE4B-202ENST00000343090 KRTAP1-4P0C5Y4 121 aa4.37□□□□□ -1.71
UBE4B-202ENST00000343090 TENM1Q9UKZ4 2725 aa4.36□□□□□ -1.71
UBE4B-202ENST00000343090 C10orf95Q9H7T3 257 aa4.36□□□□□ -1.71
UBE4B-202ENST00000343090 NBPF19A0A087WUL8 3843 aa4.36□□□□□ -1.71
UBE4B-202ENST00000343090 KRTAP13-3Q3SY46 172 aa4.33□□□□□ -1.72
UBE4B-202ENST00000343090 SPENQ96T58 3664 aaKnown RBP4.33□□□□□ -1.72
UBE4B-202ENST00000343090 TENM2Q9NT68 2774 aa4.32□□□□□ -1.72
UBE4B-202ENST00000343090 PDZD2O15018 2839 aa4.32□□□□□ -1.72
UBE4B-202ENST00000343090 PKD1L1Q8TDX9 2849 aa4.31□□□□□ -1.72
UBE4B-202ENST00000343090 FBN1P35555 2871 aaKnown RBP4.31□□□□□ -1.72
UBE4B-202ENST00000343090 VWFP04275 2813 aa4.3□□□□□ -1.72
UBE4B-202ENST00000343090 TGP01266 2768 aa4.29□□□□□ -1.72
UBE4B-202ENST00000343090 CSMD2Q7Z408 3487 aa4.28□□□□□ -1.72
UBE4B-202ENST00000343090 TNP1P09430 55 aa4.27□□□□□ -1.73
UBE4B-202ENST00000343090 ZFHX3Q15911 3703 aa4.27□□□□□ -1.73
UBE4B-202ENST00000343090 XP32Q5T750 250 aa4.25□□□□□ -1.73
UBE4B-202ENST00000343090 P0C880 135 aa4.23□□□□□ -1.73
UBE4B-202ENST00000343090 OTOGQ6ZRI0 2925 aa4.22□□□□□ -1.73
UBE4B-202ENST00000343090 KRTAP21-3Q3LHN1 58 aa4.19□□□□□ -1.74
UBE4B-202ENST00000343090 BSNQ9UPA5 3926 aa4.18□□□□□ -1.74
UBE4B-202ENST00000343090 ANK3Q12955 4377 aaKnown RBP4.17□□□□□ -1.74
UBE4B-202ENST00000343090 TPRXLQ17RH7 258 aa4.16□□□□□ -1.74
UBE4B-202ENST00000343090 A0A1B0GVY2 172 aa4.16□□□□□ -1.74
UBE4B-202ENST00000343090 PP632Q6XCG6 107 aa4.15□□□□□ -1.75
UBE4B-202ENST00000343090 TRRAPQ9Y4A5 3859 aa4.14□□□□□ -1.75
UBE4B-202ENST00000343090 KRTAP10-8P60410 259 aa4.12□□□□□ -1.75
UBE4B-202ENST00000343090 FBN3Q75N90 2809 aa4.08□□□□□ -1.76
UBE4B-202ENST00000343090 PRO2289Q9P1D8 64 aa4.07□□□□□ -1.76
UBE4B-202ENST00000343090 VPS13CQ709C8 3753 aa4.07□□□□□ -1.76
UBE4B-202ENST00000343090 KRTAP12-2P59991 146 aa4.06□□□□□ -1.76
UBE4B-202ENST00000343090 SRRM2Q9UQ35 2752 aaKnown RBP4.05□□□□□ -1.76
UBE4B-202ENST00000343090 KRTAP15-1Q3LI76 137 aa4.04□□□□□ -1.76
UBE4B-202ENST00000343090 KRTAP3-1Q9BYR8 98 aa4.04□□□□□ -1.76
UBE4B-202ENST00000343090 KRTAP10-10P60014 251 aa4.02□□□□□ -1.77
UBE4B-202ENST00000343090 MEGF8Q7Z7M0 2845 aa3.99□□□□□ -1.77
UBE4B-202ENST00000343090 KRTAP13-4Q3LI77 160 aa3.99□□□□□ -1.77
UBE4B-202ENST00000343090 KRTAP12-1P59990 96 aa3.97□□□□□ -1.77
UBE4B-202ENST00000343090 COL7A1Q02388 2944 aa3.95□□□□□ -1.78
UBE4B-202ENST00000343090 KRTAP10-6P60371 365 aaPredicted RBP3.94□□□□□ -1.78
UBE4B-202ENST00000343090 HUWE1Q7Z6Z7 4374 aaKnown RBP3.91□□□□□ -1.78
UBE4B-202ENST00000343090 CSMD3Q7Z407 3707 aa3.89□□□□□ -1.79
UBE4B-202ENST00000343090 ZNF469Q96JG9 3925 aaPredicted RBP3.88□□□□□ -1.79
UBE4B-202ENST00000343090 KRTAP3-2Q9BYR7 98 aa3.83□□□□□ -1.8
UBE4B-202ENST00000343090 AKAP9Q99996 3911 aa3.82□□□□□ -1.8
UBE4B-202ENST00000343090 KRTAP3-3Q9BYR6 98 aa3.79□□□□□ -1.8
UBE4B-202ENST00000343090 ALMS1Q8TCU4 4167 aa3.78□□□□□ -1.8
UBE4B-202ENST00000343090 MT1HL1P0DM35 61 aa3.76□□□□□ -1.81
UBE4B-202ENST00000343090 KRTAP10-4P60372 401 aaPredicted RBP3.73□□□□□ -1.81
UBE4B-202ENST00000343090 DNAH9Q9NYC9 4486 aa3.7□□□□□ -1.82
UBE4B-202ENST00000343090 KRTAP4-5Q9BYR2 181 aa3.69□□□□□ -1.82
UBE4B-202ENST00000343090 DNAH1Q9P2D7 4330 aa3.65□□□□□ -1.82
UBE4B-202ENST00000343090 DNAH10Q8IVF4 4471 aa3.65□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms