RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 A0A087WSZ3 146 aa10.62□□□□□ -0.71
SYNE2-201ENST00000341472 LCE2BO14633 110 aa10.62□□□□□ -0.71
SYNE2-201ENST00000341472 CCKP06307 115 aa10.62□□□□□ -0.71
SYNE2-201ENST00000341472 Q6ZQT0 140 aa10.62□□□□□ -0.71
SYNE2-201ENST00000341472 Q96NJ1 140 aa10.61□□□□□ -0.71
SYNE2-201ENST00000341472 A0A1B0GW54 56 aa10.6□□□□□ -0.71
SYNE2-201ENST00000341472 A0A1W2PNM2 257 aa10.6□□□□□ -0.71
SYNE2-201ENST00000341472 COX6B2Q6YFQ2 88 aa10.6□□□□□ -0.71
SYNE2-201ENST00000341472 KRTAP9-6A0A140TA67 174 aa10.59□□□□□ -0.71
SYNE2-201ENST00000341472 VPS25Q9BRG1 176 aa10.59□□□□□ -0.71
SYNE2-201ENST00000341472 M0R2T5 61 aa10.53□□□□□ -0.72
SYNE2-201ENST00000341472 C20orf166-AS1Q96NR2 134 aa10.51□□□□□ -0.73
SYNE2-201ENST00000341472 A8MUU9 505 aa10.49□□□□□ -0.73
SYNE2-201ENST00000341472 KRTAP10-6P60371 365 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-201ENST00000341472 DSCR10P59022 87 aa10.47□□□□□ -0.73
SYNE2-201ENST00000341472 SIGMAR1Q99720 223 aa10.47□□□□□ -0.73
SYNE2-201ENST00000341472 LORP23490 312 aaPredicted RBP10.46□□□□□ -0.73
SYNE2-201ENST00000341472 FLGP20930 4061 aaPredicted RBP10.46□□□□□ -0.74
SYNE2-201ENST00000341472 IGKV4-1P06312 121 aa10.45□□□□□ -0.74
SYNE2-201ENST00000341472 J3QR89 54 aa10.44□□□□□ -0.74
SYNE2-201ENST00000341472 ACYP1P07311 99 aa10.44□□□□□ -0.74
SYNE2-201ENST00000341472 FSIP2Q5CZC0 6907 aa10.44□□□□□ -0.74
SYNE2-201ENST00000341472 LINC00313P59037 77 aa10.43□□□□□ -0.74
SYNE2-201ENST00000341472 FAM240AA0A1B0GVK7 77 aa10.41□□□□□ -0.74
SYNE2-201ENST00000341472 NREPQ16612 68 aa10.41□□□□□ -0.74
SYNE2-201ENST00000341472 DEFB116Q30KQ4 102 aa10.39□□□□□ -0.75
SYNE2-201ENST00000341472 LINC00472Q9H8W2 130 aa10.39□□□□□ -0.75
SYNE2-201ENST00000341472 UBL5Q9BZL1 73 aa10.38□□□□□ -0.75
SYNE2-201ENST00000341472 LINC00846Q9NV44 126 aa10.37□□□□□ -0.75
SYNE2-201ENST00000341472 CRCT1Q9UGL9 99 aa10.35□□□□□ -0.75
SYNE2-201ENST00000341472 J3KT08 172 aa10.34□□□□□ -0.75
SYNE2-201ENST00000341472 KRTAP16-1A8MUX0 517 aa10.33□□□□□ -0.76
SYNE2-201ENST00000341472 Q6ZVQ6 151 aa10.33□□□□□ -0.76
SYNE2-201ENST00000341472 NOTCH2NLQ7Z3S9 236 aa10.33□□□□□ -0.76
SYNE2-201ENST00000341472 K7ERU9 68 aa10.32□□□□□ -0.76
SYNE2-201ENST00000341472 IGHV6-1A0A0B4J1U7 121 aa10.31□□□□□ -0.76
SYNE2-201ENST00000341472 BPY2O14599 106 aa10.26□□□□□ -0.77
SYNE2-201ENST00000341472 C8orf87E5RJ46 101 aa10.24□□□□□ -0.77
SYNE2-201ENST00000341472 NDUFB1O75438 58 aa10.24□□□□□ -0.77
SYNE2-201ENST00000341472 A0A1B0GVX0 72 aa10.23□□□□□ -0.77
SYNE2-201ENST00000341472 A8MWP4 228 aa10.2□□□□□ -0.78
SYNE2-201ENST00000341472 LINC00643Q86TS7 51 aa10.2□□□□□ -0.78
SYNE2-201ENST00000341472 CXCL6P80162 114 aa10.19□□□□□ -0.78
SYNE2-201ENST00000341472 FAM236DA0A1B0GTK5 79 aa10.18□□□□□ -0.78
SYNE2-201ENST00000341472 FAM236CP0DP71 79 aa10.18□□□□□ -0.78
SYNE2-201ENST00000341472 ATP5EP2Q5VTU8 51 aa10.18□□□□□ -0.78
SYNE2-201ENST00000341472 RBM12B-AS1Q9P1G2 102 aa10.16□□□□□ -0.78
SYNE2-201ENST00000341472 IGKV3D-7A0A0C4DH55 119 aa10.14□□□□□ -0.79
SYNE2-201ENST00000341472 PRR15Q8IV56 129 aa10.14□□□□□ -0.79
SYNE2-201ENST00000341472 HRES1P13985 223 aa10.13□□□□□ -0.79
SYNE2-201ENST00000341472 K7EQZ3 153 aa10.11□□□□□ -0.79
SYNE2-201ENST00000341472 MPLKIPQ8TAP9 179 aa10.11□□□□□ -0.79
SYNE2-201ENST00000341472 ZCCHC13Q8WW36 166 aaKnown RBP10.1□□□□□ -0.79
SYNE2-201ENST00000341472 KRTAP9-8Q9BYQ0 159 aa10.1□□□□□ -0.79
SYNE2-201ENST00000341472 Q8N9L7 120 aa10.06□□□□□ -0.8
SYNE2-201ENST00000341472 C8orf17Q9NRJ1 99 aa10.06□□□□□ -0.8
SYNE2-201ENST00000341472 Q8N9P0 234 aaPredicted RBP10.05□□□□□ -0.8
SYNE2-201ENST00000341472 SPINK7P58062 85 aa10.04□□□□□ -0.8
SYNE2-201ENST00000341472 HIST1H4AP62805 103 aaKnown RBP10.01□□□□□ -0.81
SYNE2-201ENST00000341472 MMP24-AS1A0A0U1RRL7 71 aa10□□□□□ -0.81
SYNE2-201ENST00000341472 hDV103S1A0JD37 113 aa9.98□□□□□ -0.81
SYNE2-201ENST00000341472 IMUPQ9GZP8 106 aa9.98□□□□□ -0.81
SYNE2-201ENST00000341472 HCG22E2RYF7 251 aa9.97□□□□□ -0.81
SYNE2-201ENST00000341472 TMEM254Q8TBM7 123 aa9.97□□□□□ -0.81
SYNE2-201ENST00000341472 CASC2Q6XLA1 102 aa9.96□□□□□ -0.82
SYNE2-201ENST00000341472 MT2AP02795 61 aa9.95□□□□□ -0.82
SYNE2-201ENST00000341472 MRPL34Q9BQ48 92 aaKnown RBP9.94□□□□□ -0.82
SYNE2-201ENST00000341472 MT-ATP8P03928 68 aa9.93□□□□□ -0.82
SYNE2-201ENST00000341472 WFDC13Q8IUB5 93 aa9.93□□□□□ -0.82
SYNE2-201ENST00000341472 USH2AO75445 5202 aa9.91□□□□□ -0.82
SYNE2-201ENST00000341472 A0A087WVE0 104 aa9.88□□□□□ -0.83
SYNE2-201ENST00000341472 KRTAP10-10P60014 251 aa9.87□□□□□ -0.83
SYNE2-201ENST00000341472 MT1FP04733 61 aa9.86□□□□□ -0.83
SYNE2-201ENST00000341472 NDUFS5O43920 106 aa9.84□□□□□ -0.83
SYNE2-201ENST00000341472 SSPOA2VEC9 5147 aa9.83□□□□□ -0.84
SYNE2-201ENST00000341472 TP53AIP1Q9HCN2 124 aa9.8□□□□□ -0.84
SYNE2-201ENST00000341472 KRTAP9-3Q9BYQ3 159 aa9.79□□□□□ -0.84
SYNE2-201ENST00000341472 SCGB1A1P11684 91 aa9.76□□□□□ -0.85
SYNE2-201ENST00000341472 FAM236AA0A1B0GUQ0 79 aa9.72□□□□□ -0.85
SYNE2-201ENST00000341472 FAM236BA0A1B0GV22 79 aa9.72□□□□□ -0.85
SYNE2-201ENST00000341472 UQCRQO14949 82 aa9.69□□□□□ -0.86
SYNE2-201ENST00000341472 H1FX-AS1Q4G0G2 97 aa9.69□□□□□ -0.86
SYNE2-201ENST00000341472 Q5W150 140 aa9.68□□□□□ -0.86
SYNE2-201ENST00000341472 IGKV2D-30A0A075B6S6 120 aa9.67□□□□□ -0.86
SYNE2-201ENST00000341472 IGKV2-30P06310 120 aa9.67□□□□□ -0.86
SYNE2-201ENST00000341472 SMIM20Q8N5G0 67 aa9.67□□□□□ -0.86
SYNE2-201ENST00000341472 OCR1Q9BZK8 76 aa9.66□□□□□ -0.86
SYNE2-201ENST00000341472 ATOX1O00244 68 aa9.64□□□□□ -0.87
SYNE2-201ENST00000341472 C7orf65Q6ZTY9 151 aa9.63□□□□□ -0.87
SYNE2-201ENST00000341472 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-201ENST00000341472 FCGBPQ9Y6R7 5405 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-201ENST00000341472 TRAV22A0A0B4J277 110 aa9.61□□□□□ -0.87
SYNE2-201ENST00000341472 KRTAP19-1Q8IUB9 90 aa9.61□□□□□ -0.87
SYNE2-201ENST00000341472 C5orf47Q569G3 176 aa9.59□□□□□ -0.87
SYNE2-201ENST00000341472 TRAV7A0A075B6U4 112 aa9.58□□□□□ -0.88
SYNE2-201ENST00000341472 H0Y9P7 68 aa9.55□□□□□ -0.88
SYNE2-201ENST00000341472 MP68P56378 58 aa9.55□□□□□ -0.88
SYNE2-201ENST00000341472 KRTAP9-7A8MTY7 169 aa9.52□□□□□ -0.89
SYNE2-201ENST00000341472 C4orf26Q17RF5 130 aa9.52□□□□□ -0.89
SYNE2-201ENST00000341472 LOC100996750A0A140TA64 210 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms