RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 hDV103S1A0JD37 113 aa9.76□□□□□ -0.85
DDX41-201ENST00000330503 PRR26Q8N8Z3 221 aa9.76□□□□□ -0.85
DDX41-201ENST00000330503 H7BZZ5 65 aa9.74□□□□□ -0.85
DDX41-201ENST00000330503 C1orf195Q5TG92 126 aa9.74□□□□□ -0.85
DDX41-201ENST00000330503 TMEM258P61165 79 aa9.71□□□□□ -0.85
DDX41-201ENST00000330503 C5orf47Q569G3 176 aa9.71□□□□□ -0.85
DDX41-201ENST00000330503 PKHD1L1Q86WI1 4243 aa9.71□□□□□ -0.86
DDX41-201ENST00000330503 C4orf48Q5BLP8 95 aa9.7□□□□□ -0.86
DDX41-201ENST00000330503 SPINK1P00995 79 aa9.68□□□□□ -0.86
DDX41-201ENST00000330503 LIMD2Q9BT23 127 aa9.68□□□□□ -0.86
DDX41-201ENST00000330503 ZCCHC13Q8WW36 166 aaKnown RBP9.67□□□□□ -0.86
DDX41-201ENST00000330503 HSPG2P98160 4391 aa9.66□□□□□ -0.86
DDX41-201ENST00000330503 NDUFC1O43677 76 aa9.66□□□□□ -0.86
DDX41-201ENST00000330503 LINC00304Q8N9R0 145 aa9.65□□□□□ -0.86
DDX41-201ENST00000330503 MRPL34Q9BQ48 92 aaKnown RBP9.65□□□□□ -0.86
DDX41-201ENST00000330503 FAM229AH3BQW9 127 aa9.62□□□□□ -0.87
DDX41-201ENST00000330503 C8orf87E5RJ46 101 aa9.61□□□□□ -0.87
DDX41-201ENST00000330503 H0Y9P7 68 aa9.61□□□□□ -0.87
DDX41-201ENST00000330503 SPAG11AQ6PDA7 123 aa9.61□□□□□ -0.87
DDX41-201ENST00000330503 MP68P56378 58 aa9.61□□□□□ -0.87
DDX41-201ENST00000330503 TP53AIP1Q9HCN2 124 aa9.6□□□□□ -0.87
DDX41-201ENST00000330503 RPS29P62273 56 aaKnown RBP9.59□□□□□ -0.87
DDX41-201ENST00000330503 KRTAP17-1Q9BYP8 105 aa9.59□□□□□ -0.87
DDX41-201ENST00000330503 RYR1P21817 5038 aa9.59□□□□□ -0.87
DDX41-201ENST00000330503 FAM236DA0A1B0GTK5 79 aa9.59□□□□□ -0.87
DDX41-201ENST00000330503 FAM236CP0DP71 79 aa9.59□□□□□ -0.87
DDX41-201ENST00000330503 LINC00208Q96KT6 92 aa9.59□□□□□ -0.87
DDX41-201ENST00000330503 NDUFS5O43920 106 aa9.58□□□□□ -0.88
DDX41-201ENST00000330503 LINC00313P59037 77 aa9.58□□□□□ -0.88
DDX41-201ENST00000330503 Q5VSD8 79 aa9.56□□□□□ -0.88
DDX41-201ENST00000330503 TRAV22A0A0B4J277 110 aa9.56□□□□□ -0.88
DDX41-201ENST00000330503 H3BPC8 53 aa9.55□□□□□ -0.88
DDX41-201ENST00000330503 C1orf64Q8NEQ6 169 aa9.53□□□□□ -0.88
DDX41-201ENST00000330503 KRTAP16-1A8MUX0 517 aa9.52□□□□□ -0.89
DDX41-201ENST00000330503 RPS28P62857 69 aaKnown RBP9.52□□□□□ -0.89
DDX41-201ENST00000330503 Q5W150 140 aa9.5□□□□□ -0.89
DDX41-201ENST00000330503 Q8N9P0 234 aaPredicted RBP9.49□□□□□ -0.89
DDX41-201ENST00000330503 KRTAP13-3Q3SY46 172 aa9.48□□□□□ -0.89
DDX41-201ENST00000330503 TNXBP22105 4242 aa9.48□□□□□ -0.89
DDX41-201ENST00000330503 LRP1Q07954 4544 aaKnown RBP9.48□□□□□ -0.89
DDX41-201ENST00000330503 OXTP01178 125 aa9.47□□□□□ -0.89
DDX41-201ENST00000330503 ATP5EP56381 51 aaPredicted RBP9.47□□□□□ -0.89
DDX41-201ENST00000330503 KRTAP10-8P60410 259 aa9.47□□□□□ -0.89
DDX41-201ENST00000330503 EPPK1P58107 5090 aaKnown RBP9.47□□□□□ -0.89
DDX41-201ENST00000330503 KIAA1109Q2LD37 5005 aa9.46□□□□□ -0.89
DDX41-201ENST00000330503 Q8N1X5 172 aa9.44□□□□□ -0.9
DDX41-201ENST00000330503 SERP1Q9Y6X1 66 aa9.43□□□□□ -0.9
DDX41-201ENST00000330503 FAT3Q8TDW7 4589 aa9.41□□□□□ -0.9
DDX41-201ENST00000330503 FLG2Q5D862 2391 aaPredicted RBP9.39□□□□□ -0.91
DDX41-201ENST00000330503 RETNLBQ9BQ08 111 aa9.38□□□□□ -0.91
DDX41-201ENST00000330503 PRR4Q16378 134 aa9.37□□□□□ -0.91
DDX41-201ENST00000330503 PCOTHQ58A44 107 aa9.36□□□□□ -0.91
DDX41-201ENST00000330503 SPANXA2-OT1Q8N9U9 137 aa9.36□□□□□ -0.91
DDX41-201ENST00000330503 CYP4F30PQ9H0H9 118 aa9.36□□□□□ -0.91
DDX41-201ENST00000330503 LOC101927531A0A1B0GV80 90 aa9.34□□□□□ -0.91
DDX41-201ENST00000330503 C9orf92A6NGG3 77 aa9.31□□□□□ -0.92
DDX41-201ENST00000330503 IGLV7-46A0A075B6I9 117 aa9.31□□□□□ -0.92
DDX41-201ENST00000330503 MT1HL1P0DM35 61 aa9.29□□□□□ -0.92
DDX41-201ENST00000330503 IGKV2-30P06310 120 aa9.26□□□□□ -0.93
DDX41-201ENST00000330503 MYCBP2O75592 4640 aa9.25□□□□□ -0.93
DDX41-201ENST00000330503 A8MUU9 505 aa9.25□□□□□ -0.93
DDX41-201ENST00000330503 C20orf166-AS1Q96NR2 134 aa9.24□□□□□ -0.93
DDX41-201ENST00000330503 KRTAP4-5Q9BYR2 181 aa9.22□□□□□ -0.93
DDX41-201ENST00000330503 DMBT1Q9UGM3 2413 aaPredicted RBP9.22□□□□□ -0.93
DDX41-201ENST00000330503 SMIM26A0A096LP01 95 aa9.21□□□□□ -0.94
DDX41-201ENST00000330503 FP248Q71RG6 208 aaPredicted RBP9.19□□□□□ -0.94
DDX41-201ENST00000330503 HRES1P13985 223 aa9.18□□□□□ -0.94
DDX41-201ENST00000330503 IGKV2D-30A0A075B6S6 120 aa9.17□□□□□ -0.94
DDX41-201ENST00000330503 COA5Q86WW8 74 aa9.12□□□□□ -0.95
DDX41-201ENST00000330503 Q75L30 129 aa9.11□□□□□ -0.95
DDX41-201ENST00000330503 C4orf26Q17RF5 130 aa9.1□□□□□ -0.95
DDX41-201ENST00000330503 C7orf65Q6ZTY9 151 aa9.07□□□□□ -0.96
DDX41-201ENST00000330503 MPLKIPQ8TAP9 179 aa9.06□□□□□ -0.96
DDX41-201ENST00000330503 DMAC1Q96GE9 116 aa9.05□□□□□ -0.96
DDX41-201ENST00000330503 ACYP2P14621 99 aa9.02□□□□□ -0.97
DDX41-201ENST00000330503 XP32Q5T750 250 aa9.02□□□□□ -0.97
DDX41-201ENST00000330503 Q1T7F1 81 aa9.01□□□□□ -0.97
DDX41-201ENST00000330503 BIRC6Q9NR09 4857 aa9□□□□□ -0.97
DDX41-201ENST00000330503 ABCA13Q86UQ4 5058 aa8.99□□□□□ -0.97
DDX41-201ENST00000330503 RPL37P61927 97 aaKnown RBP8.99□□□□□ -0.97
DDX41-201ENST00000330503 SPINK7P58062 85 aa8.98□□□□□ -0.97
DDX41-201ENST00000330503 HERC2O95714 4834 aa8.96□□□□□ -0.97
DDX41-201ENST00000330503 ATP11AUNQ6ZP68 121 aa8.95□□□□□ -0.98
DDX41-201ENST00000330503 V9GYY9 64 aa8.89□□□□□ -0.99
DDX41-201ENST00000330503 TPRXLQ17RH7 258 aa8.88□□□□□ -0.99
DDX41-201ENST00000330503 KRTAP3-1Q9BYR8 98 aa8.88□□□□□ -0.99
DDX41-201ENST00000330503 CHKB-CPT1BH3BT56 60 aa8.86□□□□□ -0.99
DDX41-201ENST00000330503 A8MUN3 132 aa8.85□□□□□ -0.99
DDX41-201ENST00000330503 PSPHP1O15172 72 aa8.85□□□□□ -0.99
DDX41-201ENST00000330503 J3QL48 77 aa8.83□□□□□ -1
DDX41-201ENST00000330503 LINC01558Q9Y6Z2 57 aa8.82□□□□□ -1
DDX41-201ENST00000330503 LPAP08519 4548 aa8.81□□□□□ -1
DDX41-201ENST00000330503 LRP2P98164 4655 aa8.79□□□□□ -1
DDX41-201ENST00000330503 PRR15LQ9BU68 103 aa8.78□□□□□ -1
DDX41-201ENST00000330503 Q5VV11 94 aa8.78□□□□□ -1
DDX41-201ENST00000330503 COX6B2Q6YFQ2 88 aa8.77□□□□□ -1.01
DDX41-201ENST00000330503 PRO0628Q9UI54 55 aa8.75□□□□□ -1.01
DDX41-201ENST00000330503 SEC61GP60059 68 aa8.63□□□□□ -1.03
DDX41-201ENST00000330503 BRK1Q8WUW1 75 aa8.62□□□□□ -1.03
DDX41-201ENST00000330503 SPTSSBQ8NFR3 76 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms