RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 FBN2P35556 2912 aa7.88□□□□□ -1.15
RFFL-201ENST00000315249 DCHS1Q96JQ0 3298 aa7.86□□□□□ -1.15
RFFL-201ENST00000315249 KRTAP11-1Q8IUC1 163 aa7.86□□□□□ -1.15
RFFL-201ENST00000315249 TENM1Q9UKZ4 2725 aa7.85□□□□□ -1.15
RFFL-201ENST00000315249 KRTAP4-16G5E9R7 235 aaPredicted RBP7.84□□□□□ -1.15
RFFL-201ENST00000315249 CELSR1Q9NYQ6 3014 aa7.83□□□□□ -1.16
RFFL-201ENST00000315249 HRNRQ86YZ3 2850 aaPredicted RBP7.82□□□□□ -1.16
RFFL-201ENST00000315249 DMAC1Q96GE9 116 aa7.81□□□□□ -1.16
RFFL-201ENST00000315249 M0QZ58 72 aa7.8□□□□□ -1.16
RFFL-201ENST00000315249 LCA10Q71F78 164 aa7.79□□□□□ -1.16
RFFL-201ENST00000315249 Q1T7F1 81 aa7.78□□□□□ -1.16
RFFL-201ENST00000315249 PLAC4Q8WY50 150 aa7.76□□□□□ -1.17
RFFL-201ENST00000315249 ADM2Q7Z4H4 148 aa7.75□□□□□ -1.17
RFFL-201ENST00000315249 DMDP11532 3685 aa7.75□□□□□ -1.17
RFFL-201ENST00000315249 LUZP6Q538Z0 58 aa7.74□□□□□ -1.17
RFFL-201ENST00000315249 MUC3AQ02505 3323 aa7.72□□□□□ -1.17
RFFL-201ENST00000315249 ZFHX3Q15911 3703 aa7.71□□□□□ -1.17
RFFL-201ENST00000315249 NOTCH2NLQ7Z3S9 236 aa7.71□□□□□ -1.17
RFFL-201ENST00000315249 ZFHX4Q86UP3 3567 aa7.69□□□□□ -1.18
RFFL-201ENST00000315249 KRTAP13-2Q52LG2 175 aa7.69□□□□□ -1.18
RFFL-201ENST00000315249 KRTAP7-1Q8IUC3 87 aa7.68□□□□□ -1.18
RFFL-201ENST00000315249 PKD1L1Q8TDX9 2849 aa7.68□□□□□ -1.18
RFFL-201ENST00000315249 RPS29P62273 56 aaKnown RBP7.66□□□□□ -1.18
RFFL-201ENST00000315249 KTN1-AS1Q86SY8 53 aa7.65□□□□□ -1.18
RFFL-201ENST00000315249 H1FX-AS1Q4G0G2 97 aa7.64□□□□□ -1.19
RFFL-201ENST00000315249 LINC01558Q9Y6Z2 57 aa7.63□□□□□ -1.19
RFFL-201ENST00000315249 Q75L30 129 aa7.63□□□□□ -1.19
RFFL-201ENST00000315249 C20orf166-AS1Q96NR2 134 aa7.62□□□□□ -1.19
RFFL-201ENST00000315249 TENM2Q9NT68 2774 aa7.61□□□□□ -1.19
RFFL-201ENST00000315249 TENM3Q9P273 2699 aa7.61□□□□□ -1.19
RFFL-201ENST00000315249 ASB16-AS1Q495Z4 193 aa7.6□□□□□ -1.19
RFFL-201ENST00000315249 CYSTM1Q9H1C7 97 aa7.59□□□□□ -1.19
RFFL-201ENST00000315249 RPL37P61927 97 aaKnown RBP7.58□□□□□ -1.2
RFFL-201ENST00000315249 SPATA8Q6RVD6 105 aa7.57□□□□□ -1.2
RFFL-201ENST00000315249 MXRA5Q9NR99 2828 aa7.56□□□□□ -1.2
RFFL-201ENST00000315249 KRTAP13-1Q8IUC0 172 aa7.56□□□□□ -1.2
RFFL-201ENST00000315249 KRTAP29-1A8MX34 341 aaPredicted RBP7.54□□□□□ -1.2
RFFL-201ENST00000315249 A8MUU9 505 aa7.53□□□□□ -1.2
RFFL-201ENST00000315249 CSMD1Q96PZ7 3565 aa7.52□□□□□ -1.2
RFFL-201ENST00000315249 VWFP04275 2813 aa7.52□□□□□ -1.2
RFFL-201ENST00000315249 Q5VV11 94 aa7.48□□□□□ -1.21
RFFL-201ENST00000315249 Q5XG85 94 aa7.46□□□□□ -1.22
RFFL-201ENST00000315249 SMG1Q96Q15 3661 aaKnown RBP7.45□□□□□ -1.22
RFFL-201ENST00000315249 ROMO1P60602 79 aa7.44□□□□□ -1.22
RFFL-201ENST00000315249 PRAC1Q96KF2 57 aa7.42□□□□□ -1.22
RFFL-201ENST00000315249 A0A1B0GVY2 172 aa7.39□□□□□ -1.23
RFFL-201ENST00000315249 PDZD2O15018 2839 aa7.37□□□□□ -1.23
RFFL-201ENST00000315249 SPENQ96T58 3664 aaKnown RBP7.35□□□□□ -1.23
RFFL-201ENST00000315249 KRTAP1-4P0C5Y4 121 aa7.34□□□□□ -1.24
RFFL-201ENST00000315249 XP32Q5T750 250 aa7.33□□□□□ -1.24
RFFL-201ENST00000315249 CSMD2Q7Z408 3487 aa7.33□□□□□ -1.24
RFFL-201ENST00000315249 SVEP1Q4LDE5 3571 aa7.31□□□□□ -1.24
RFFL-201ENST00000315249 FBN1P35555 2871 aaKnown RBP7.3□□□□□ -1.24
RFFL-201ENST00000315249 A8MU10 97 aa7.3□□□□□ -1.24
RFFL-201ENST00000315249 TGP01266 2768 aa7.3□□□□□ -1.24
RFFL-201ENST00000315249 CUBNO60494 3623 aa7.29□□□□□ -1.24
RFFL-201ENST00000315249 TPRXLQ17RH7 258 aa7.24□□□□□ -1.25
RFFL-201ENST00000315249 KRTAP10-10P60014 251 aa7.2□□□□□ -1.26
RFFL-201ENST00000315249 KRTAP10-8P60410 259 aa7.19□□□□□ -1.26
RFFL-201ENST00000315249 OTOGQ6ZRI0 2925 aa7.17□□□□□ -1.26
RFFL-201ENST00000315249 TNP1P09430 55 aa7.15□□□□□ -1.26
RFFL-201ENST00000315249 BSNQ9UPA5 3926 aa7.14□□□□□ -1.27
RFFL-201ENST00000315249 TRRAPQ9Y4A5 3859 aa7.13□□□□□ -1.27
RFFL-201ENST00000315249 SRRM2Q9UQ35 2752 aaKnown RBP7.12□□□□□ -1.27
RFFL-201ENST00000315249 KRTAP13-3Q3SY46 172 aa7.09□□□□□ -1.27
RFFL-201ENST00000315249 A0A0A0MQY5 61 aa7.07□□□□□ -1.28
RFFL-201ENST00000315249 COL7A1Q02388 2944 aa7.03□□□□□ -1.28
RFFL-201ENST00000315249 ANK3Q12955 4377 aaKnown RBP7□□□□□ -1.29
RFFL-201ENST00000315249 PRO2289Q9P1D8 64 aa6.94□□□□□ -1.3
RFFL-201ENST00000315249 KRTAP16-1A8MUX0 517 aa6.92□□□□□ -1.3
RFFL-201ENST00000315249 KRTAP25-1Q3LHN0 102 aa6.9□□□□□ -1.3
RFFL-201ENST00000315249 VPS13CQ709C8 3753 aa6.89□□□□□ -1.31
RFFL-201ENST00000315249 C10orf95Q9H7T3 257 aa6.89□□□□□ -1.31
RFFL-201ENST00000315249 FBN3Q75N90 2809 aa6.89□□□□□ -1.31
RFFL-201ENST00000315249 P0C880 135 aa6.81□□□□□ -1.32
RFFL-201ENST00000315249 MEGF8Q7Z7M0 2845 aa6.79□□□□□ -1.32
RFFL-201ENST00000315249 A6NN06 94 aa6.77□□□□□ -1.33
RFFL-201ENST00000315249 H0YAA0 97 aa6.73□□□□□ -1.33
RFFL-201ENST00000315249 H3BS24 57 aa6.73□□□□□ -1.33
RFFL-201ENST00000315249 PP632Q6XCG6 107 aa6.7□□□□□ -1.34
RFFL-201ENST00000315249 ZNF469Q96JG9 3925 aaPredicted RBP6.7□□□□□ -1.34
RFFL-201ENST00000315249 CSMD3Q7Z407 3707 aa6.62□□□□□ -1.35
RFFL-201ENST00000315249 NDUFAF8A1L188 74 aa6.62□□□□□ -1.35
RFFL-201ENST00000315249 HUWE1Q7Z6Z7 4374 aaKnown RBP6.61□□□□□ -1.35
RFFL-201ENST00000315249 KRTAP4-5Q9BYR2 181 aa6.57□□□□□ -1.36
RFFL-201ENST00000315249 AKAP9Q99996 3911 aa6.54□□□□□ -1.36
RFFL-201ENST00000315249 MT1HL1P0DM35 61 aa6.49□□□□□ -1.37
RFFL-201ENST00000315249 KRTAP12-2P59991 146 aa6.45□□□□□ -1.38
RFFL-201ENST00000315249 KRTAP3-1Q9BYR8 98 aa6.37□□□□□ -1.39
RFFL-201ENST00000315249 ALMS1Q8TCU4 4167 aa6.34□□□□□ -1.39
RFFL-201ENST00000315249 KRTAP12-1P59990 96 aa6.31□□□□□ -1.4
RFFL-201ENST00000315249 KRTAP13-4Q3LI77 160 aa6.3□□□□□ -1.4
RFFL-201ENST00000315249 DNAH9Q9NYC9 4486 aa6.24□□□□□ -1.41
RFFL-201ENST00000315249 KRTAP10-4P60372 401 aaPredicted RBP6.24□□□□□ -1.41
RFFL-201ENST00000315249 KRTAP15-1Q3LI76 137 aa6.18□□□□□ -1.42
RFFL-201ENST00000315249 KRTAP10-6P60371 365 aaPredicted RBP6.1□□□□□ -1.43
RFFL-201ENST00000315249 DNAH1Q9P2D7 4330 aa6.1□□□□□ -1.43
RFFL-201ENST00000315249 CRCT1Q9UGL9 99 aa6.09□□□□□ -1.44
RFFL-201ENST00000315249 KRTAP10-12P60413 245 aa6.02□□□□□ -1.45
RFFL-201ENST00000315249 KRTAP3-3Q9BYR6 98 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms