RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PLAC8Q9NZF1 115 aa2.91□□□□□ -1.94
CSMD3-201ENST00000297405 ADM2Q7Z4H4 148 aa2.91□□□□□ -1.94
CSMD3-201ENST00000297405 A0A1W2PNN7 141 aa2.91□□□□□ -1.94
CSMD3-201ENST00000297405 WWC2-AS2Q96NR7 200 aa2.91□□□□□ -1.94
CSMD3-201ENST00000297405 KRTAP11-1Q8IUC1 163 aa2.91□□□□□ -1.94
CSMD3-201ENST00000297405 A0A0G2JQZ4 141 aa2.9□□□□□ -1.94
CSMD3-201ENST00000297405 DNAH14Q0VDD8 3507 aa2.89□□□□□ -1.95
CSMD3-201ENST00000297405 MEGF8Q7Z7M0 2845 aa2.89□□□□□ -1.95
CSMD3-201ENST00000297405 C9orf92A6NGG3 77 aa2.89□□□□□ -1.95
CSMD3-201ENST00000297405 TNP1P09430 55 aa2.89□□□□□ -1.95
CSMD3-201ENST00000297405 CASC10Q5T4H9 136 aa2.89□□□□□ -1.95
CSMD3-201ENST00000297405 KRTAP26-1Q6PEX3 210 aa2.89□□□□□ -1.95
CSMD3-201ENST00000297405 KRTAP4-16G5E9R7 235 aaPredicted RBP2.88□□□□□ -1.95
CSMD3-201ENST00000297405 Q8NDZ9 215 aa2.88□□□□□ -1.95
CSMD3-201ENST00000297405 A8MUU9 505 aa2.88□□□□□ -1.95
CSMD3-201ENST00000297405 J3QL48 77 aa2.87□□□□□ -1.95
CSMD3-201ENST00000297405 COL6A3P12111 3177 aa2.84□□□□□ -1.95
CSMD3-201ENST00000297405 CELSR3Q9NYQ7 3312 aa2.82□□□□□ -1.96
CSMD3-201ENST00000297405 P0C880 135 aa2.81□□□□□ -1.96
CSMD3-201ENST00000297405 VCANP13611 3396 aa2.81□□□□□ -1.96
CSMD3-201ENST00000297405 MKI67P46013 3256 aaKnown RBP2.8□□□□□ -1.96
CSMD3-201ENST00000297405 SPEGQ15772 3267 aa2.79□□□□□ -1.96
CSMD3-201ENST00000297405 K7EIL1 84 aa2.78□□□□□ -1.96
CSMD3-201ENST00000297405 M0R2T5 61 aa2.77□□□□□ -1.97
CSMD3-201ENST00000297405 KRTAP10-9P60411 292 aa2.76□□□□□ -1.97
CSMD3-201ENST00000297405 INE1O15225 51 aa2.76□□□□□ -1.97
CSMD3-201ENST00000297405 SMR3AQ99954 134 aa2.75□□□□□ -1.97
CSMD3-201ENST00000297405 KRTAP24-1Q3LI83 254 aa2.75□□□□□ -1.97
CSMD3-201ENST00000297405 SPTBN5Q9NRC6 3674 aaKnown RBP2.74□□□□□ -1.97
CSMD3-201ENST00000297405 KRTAP10-11P60412 298 aa2.74□□□□□ -1.97
CSMD3-201ENST00000297405 C10orf95Q9H7T3 257 aa2.73□□□□□ -1.97
CSMD3-201ENST00000297405 NBPF19A0A087WUL8 3843 aa2.73□□□□□ -1.97
CSMD3-201ENST00000297405 FBN3Q75N90 2809 aa2.73□□□□□ -1.97
CSMD3-201ENST00000297405 SZT2Q5T011 3432 aa2.73□□□□□ -1.97
CSMD3-201ENST00000297405 LAMA3Q16787 3333 aa2.71□□□□□ -1.98
CSMD3-201ENST00000297405 FBN1P35555 2871 aaKnown RBP2.71□□□□□ -1.98
CSMD3-201ENST00000297405 MYO15AQ9UKN7 3530 aa2.7□□□□□ -1.98
CSMD3-201ENST00000297405 Q6ZRN7 208 aaPredicted RBP2.7□□□□□ -1.98
CSMD3-201ENST00000297405 LOC400499M0QZD8 3231 aa2.69□□□□□ -1.98
CSMD3-201ENST00000297405 H0YAA0 97 aa2.69□□□□□ -1.98
CSMD3-201ENST00000297405 SPENQ96T58 3664 aaKnown RBP2.68□□□□□ -1.98
CSMD3-201ENST00000297405 KRTAP13-1Q8IUC0 172 aa2.67□□□□□ -1.98
CSMD3-201ENST00000297405 DMDP11532 3685 aa2.66□□□□□ -1.98
CSMD3-201ENST00000297405 A8MU10 97 aa2.66□□□□□ -1.98
CSMD3-201ENST00000297405 BRCA2P51587 3418 aa2.66□□□□□ -1.98
CSMD3-201ENST00000297405 PRO2289Q9P1D8 64 aa2.66□□□□□ -1.98
CSMD3-201ENST00000297405 ASPMQ8IZT6 3477 aa2.64□□□□□ -1.99
CSMD3-201ENST00000297405 Q5VSD8 79 aa2.63□□□□□ -1.99
CSMD3-201ENST00000297405 SMR3BP02814 79 aaPredicted RBP2.63□□□□□ -1.99
CSMD3-201ENST00000297405 AKAP9Q99996 3911 aa2.63□□□□□ -1.99
CSMD3-201ENST00000297405 ZFHX4Q86UP3 3567 aa2.62□□□□□ -1.99
CSMD3-201ENST00000297405 WDFY3Q8IZQ1 3526 aa2.62□□□□□ -1.99
CSMD3-201ENST00000297405 KRTAP23-1A1A580 65 aa2.61□□□□□ -1.99
CSMD3-201ENST00000297405 EYSQ5T1H1 3165 aa2.6□□□□□ -1.99
CSMD3-201ENST00000297405 KRTAP10-3P60369 221 aa2.58□□□□□ -2
CSMD3-201ENST00000297405 CDH23Q9H251 3354 aa2.58□□□□□ -2
CSMD3-201ENST00000297405 KRTAP1-3Q8IUG1 177 aa2.58□□□□□ -2
CSMD3-201ENST00000297405 KRTAP1-5Q9BYS1 174 aa2.57□□□□□ -2
CSMD3-201ENST00000297405 RELNP78509 3460 aa2.57□□□□□ -2
CSMD3-201ENST00000297405 DCHS1Q96JQ0 3298 aa2.57□□□□□ -2
CSMD3-201ENST00000297405 SMG1Q96Q15 3661 aaKnown RBP2.57□□□□□ -2
CSMD3-201ENST00000297405 KRTAP13-4Q3LI77 160 aa2.57□□□□□ -2
CSMD3-201ENST00000297405 KRTAP1-1Q07627 177 aa2.56□□□□□ -2
CSMD3-201ENST00000297405 LAMA5O15230 3695 aa2.54□□□□□ -2
CSMD3-201ENST00000297405 TPRXLQ17RH7 258 aa2.51□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP13-3Q3SY46 172 aa2.51□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP13-2Q52LG2 175 aa2.51□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP10-1P60331 282 aa2.51□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP10-8P60410 259 aa2.49□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP15-1Q3LI76 137 aa2.47□□□□□ -2.01
CSMD3-201ENST00000297405 VPS13CQ709C8 3753 aa2.47□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP7-1Q8IUC3 87 aa2.47□□□□□ -2.01
CSMD3-201ENST00000297405 KRTAP10-2P60368 255 aa2.45□□□□□ -2.02
CSMD3-201ENST00000297405 BSNQ9UPA5 3926 aa2.44□□□□□ -2.02
CSMD3-201ENST00000297405 TRRAPQ9Y4A5 3859 aa2.44□□□□□ -2.02
CSMD3-201ENST00000297405 ALMS1Q8TCU4 4167 aa2.44□□□□□ -2.02
CSMD3-201ENST00000297405 XP32Q5T750 250 aa2.43□□□□□ -2.02
CSMD3-201ENST00000297405 KRTAP12-1P59990 96 aa2.42□□□□□ -2.02
CSMD3-201ENST00000297405 KRTAP12-2P59991 146 aa2.4□□□□□ -2.03
CSMD3-201ENST00000297405 CSMD1Q96PZ7 3565 aa2.39□□□□□ -2.03
CSMD3-201ENST00000297405 KRTAP1-4P0C5Y4 121 aa2.38□□□□□ -2.03
CSMD3-201ENST00000297405 LYSTQ99698 3801 aa2.37□□□□□ -2.03
CSMD3-201ENST00000297405 DNAH3Q8TD57 4116 aa2.35□□□□□ -2.03
CSMD3-201ENST00000297405 CUBNO60494 3623 aa2.35□□□□□ -2.03
CSMD3-201ENST00000297405 MUC3AQ02505 3323 aa2.34□□□□□ -2.03
CSMD3-201ENST00000297405 KRTAP21-3Q3LHN1 58 aa2.33□□□□□ -2.04
CSMD3-201ENST00000297405 CMYA5Q8N3K9 4069 aa2.31□□□□□ -2.04
CSMD3-201ENST00000297405 CSMD3Q7Z407 3707 aa2.3□□□□□ -2.04
CSMD3-201ENST00000297405 KRTAP19-4Q3LI73 84 aa2.3□□□□□ -2.04
CSMD3-201ENST00000297405 KRTAP10-10P60014 251 aa2.28□□□□□ -2.04
CSMD3-201ENST00000297405 ZNF469Q96JG9 3925 aaPredicted RBP2.27□□□□□ -2.05
CSMD3-201ENST00000297405 KRTAP10-6P60371 365 aaPredicted RBP2.27□□□□□ -2.05
CSMD3-201ENST00000297405 SVEP1Q4LDE5 3571 aa2.26□□□□□ -2.05
CSMD3-201ENST00000297405 HECTD4Q9Y4D8 3996 aa2.24□□□□□ -2.05
CSMD3-201ENST00000297405 CSMD2Q7Z408 3487 aa2.24□□□□□ -2.05
CSMD3-201ENST00000297405 DNAH7Q8WXX0 4024 aa2.23□□□□□ -2.05
CSMD3-201ENST00000297405 MT3P25713 68 aa2.23□□□□□ -2.05
CSMD3-201ENST00000297405 KRTAP10-12P60413 245 aa2.19□□□□□ -2.06
CSMD3-201ENST00000297405 KRTAP3-1Q9BYR8 98 aa2.19□□□□□ -2.06
CSMD3-201ENST00000297405 ANK2Q01484 3957 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms